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Plant Genomics Databases

Methods and Protocols

  • Aalt D.J van Dijk

Part of the Methods in Molecular Biology book series (MIMB, volume 1533)

Table of contents

  1. Front Matter
    Pages i-xii
  2. Dan M. Bolser, Daniel M. Staines, Emily Perry, Paul J. Kersey
    Pages 1-31
  3. Manuel Spannagl, Thomas Nussbaumer, Kai Bader, Heidrun Gundlach, Klaus F. X. Mayer
    Pages 33-44
  4. Akihiro Nakaya, Hisako Ichihara, Erika Asamizu, Sachiko Shirasawa, Yasukazu Nakamura, Satoshi Tabata et al.
    Pages 45-77
  5. Jean Philippe Tamby, Véronique Brunaud
    Pages 79-101
  6. A.-F. Adam-Blondon, M. Alaux, S. Durand, T. Letellier, G. Merceron, N. Mohellibi et al.
    Pages 103-117
  7. Jamie Waese, Nicholas J. Provart
    Pages 119-148
  8. Trupti Joshi, Jiaojiao Wang, Hongxin Zhang, Shiyuan Chen, Shuai Zeng, Bowei Xu et al.
    Pages 149-159
  9. Michiel Van Bel, Frederik Coppens
    Pages 201-212
  10. Sebastian Proost, Marek Mutwil
    Pages 213-227
  11. Toru Kudo, Shin Terashima, Yuno Takaki, Yukino Nakamura, Masaaki Kobayashi, Kentaro Yano
    Pages 229-240
  12. Tae-Ho Lee, Junah Kim, Jon S. Robertson, Andrew H. Paterson
    Pages 267-277
  13. Sushma Naithani, Matthew Geniza, Pankaj Jaiswal
    Pages 279-297
  14. Kazutaka Kusunoki, Yoshiharu Y. Yamamoto
    Pages 299-314
  15. Zhonghai Li, Yi Zhao, Xiaochuan Liu, Zhiqiang Jiang, Jinying Peng, Jinpu Jin et al.
    Pages 315-333
  16. Back Matter
    Pages 335-336

About this book

Introduction

This volume introduces databases containing the results from the recent revolution in sequencing technologies. Chapters in Plant Genomics Databases: Methods and Protocols describe database content, as well as typical use-cases. Some chapters explore databases that primarily present genome sequences focusing on one or a few related species, while others include additional datatypes and/or data from various plant species. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, step-by-step, readily reproducible protocols, and tips on troubleshooting and avoiding known pitfalls.


Cutting-edge and comprehensive, Plant Genomics Databases: Methods and Protocols is a valuable resource for providing clear guidance in accessing an important collection of plant databases that can be used to add biological value to genomic data.

Keywords

genome sequence expression and co-expression species-specific databases resequencing of individuals transcriptomics epigenomics

Editors and affiliations

  • Aalt D.J van Dijk
    • 1
  1. 1.PRI Bioscience, Biometris and BioinformaticsWageningen University & Research WageningenWageningenThe Netherlands

Bibliographic information

  • DOI https://doi.org/10.1007/978-1-4939-6658-5
  • Copyright Information Springer Science+Business Media New York 2017
  • Publisher Name Humana Press, New York, NY
  • eBook Packages Springer Protocols
  • Print ISBN 978-1-4939-6656-1
  • Online ISBN 978-1-4939-6658-5
  • Series Print ISSN 1064-3745
  • Series Online ISSN 1940-6029
  • Buy this book on publisher's site
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