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The Evolution of Soybean Knowledge Base (SoyKB)

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Plant Genomics Databases

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1533))

Abstract

Soybean Knowledge Base (SoyKB) is a comprehensive all-inclusive web resource for bridging the gap between soybean translational genomics and molecular breeding. It provides information for six entities including genes/proteins, microRNAs (miRNAs)/small interfering RNAs (sRNA), metabolites, single nucleotide polymorphisms (SNPs), and plant introduction lines and traits. It has a user-friendly web interface publicly available at http://soykb.org, which integrates and presents data in an intuitive manner to the soybean researchers, breeders, and consumers. It incorporates several informatics and analytical tools for integrating and merging various multi-omics datasets.

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Acknowledgment

The development has been supported by the Missouri Soybean Merchandising Council, United Soybean Board, National Science Foundation (#DBI-0421620), Department of Energy (DE-SC0004898), and the National Center for Soybean Biotechnology.

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Authors and Affiliations

  1. Department of Molecular Microbiology and Immunology, Medical Research Office School of Medicine, Informatics Institute, University of Missouri, 1201 E Rollins St., 271B LSC, Columbia, MO, 65201, USA

    Trupti Joshi

  2. Department of Computer Science, Christopher S. Bond Life Science Center, University of Missouri, Columbia, MO, USA

    Trupti Joshi, Jiaojiao Wang, Hongxin Zhang, Shiyuan Chen, Shuai Zeng, Bowei Xu & Dong Xu

Authors
  1. Trupti Joshi
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  2. Jiaojiao Wang
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  3. Hongxin Zhang
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  4. Shiyuan Chen
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  5. Shuai Zeng
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  6. Bowei Xu
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  7. Dong Xu
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Corresponding author

Correspondence to Trupti Joshi .

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Editors and Affiliations

  1. PRI Bioscience, Biometris and Bioinformatics, Wageningen University & Research Wageningen, Wageningen, The Netherlands

    Aalt D.J van Dijk

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Joshi, T. et al. (2017). The Evolution of Soybean Knowledge Base (SoyKB). In: van Dijk, A. (eds) Plant Genomics Databases. Methods in Molecular Biology, vol 1533. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6658-5_7

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  • DOI: https://doi.org/10.1007/978-1-4939-6658-5_7

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-6656-1

  • Online ISBN: 978-1-4939-6658-5

  • eBook Packages: Springer Protocols

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