Belyi, V.A., Muthukumar M.: Electrostatic origin of the genome packing in viruses. Proc. Natl. Acad. Sci. U. S. A. 103, 17174–17178 (2006)
ADS
Article
Google Scholar
Forrey, C., Muthukumar M.: Electrostatics of capsid-induced viral RNA organization. J. Chem. Phys. 131, 105101–105109 (2009)
ADS
Article
Google Scholar
Devkota, B., Petrov, A.S., Lemieux, S., Boz, M.B., Tang, L., Schneemann A., et al.: Structural and electrostatic characterization of pariacoto virus: implications for viral assembly. Biopolymers 91, 530–538 (2009)
Article
Google Scholar
Hagan, M.F.: A theory for viral capsid assembly around electrostatic cores. J. Chem. Phys. 130, 114902 (2009)
ADS
Article
Google Scholar
Routh, A., Domitrovic, T., Johnson, J.E.: Host RNAs, including transposons, are encapsidated by a eukaryotic single-stranded RNA virus. Proc. Natl. Acad. Sci. U. S. A. 109, 1907–1912 (2012)
ADS
Article
Google Scholar
Borodavka, A., Tuma, R., Stockley, P.G.: Evidence that viral RNAs have evolved for efficient, two-stage packaging. Proc. Natl. Acad. Sci. U. S. A. 109, 15769–15774 (2012)
ADS
Article
Google Scholar
Stockley, P.G., Rolfsson, O., Thompson, G.S., Basnak, G., Francese, S., Stonehouse, N.J., et al.: A simple, RNA-mediated allosteric switch controls the pathway to formation of a T = 3 viral capsid. J. Mol. Biol. 369, 541–552 (2007)
Article
Google Scholar
Dykeman, E.C., Stockley, P.G., Twarock, R.: Dynamic allostery controls coat protein conformer switching during MS2 phage assembly. J. Mol. Biol. 395, 916–923 (2010)
Article
Google Scholar
Dykeman, E.C., Twarock, R.: All-atom normal-mode analysis reveals a dynamic RNA-induced allostery in a bacteriophage coat protein. Phys. Rev. E 81, 031908 (2010)
ADS
Article
Google Scholar
Morton, V.L., Dykeman, E.C., Stonehouse, N.J., Ashcroft, A.E., Twarock, R.T., Stockley, P.G.: The impact of viral RNA on assembly pathway selection. J. Mol. Biol. 401, 298–308 (2010)
Article
Google Scholar
Morton, V.L., Burkitt, W., O’Connor, G., Stonehouse, N.J., Stockley, P.G., Ashcroft, A.E.: RNA-induced conformational changes of the MS2 coat protein dimer studied by hydrogen/deuterium exchange mass spectrometry. Phys. Chem. & Chem. Phys. 12(41), 13468–13475 (2010)
Article
Google Scholar
Dykeman, E.C., Grayson, N.E., Toropova, K., Ranson, N.A., Stockley, P.G., Twarock, R.: Simple rules for efficient assembly predict the layout of a packaged viral RNA. J. Mol. Biol. 408, 399–407 (2011)
Article
Google Scholar
Bunka, D.H.J., Lane, S.W., Lane, C.L., Dykeman, E.C., Ford, R.J., Barker, A.M., Twarock, R., Phillips, S.E.V., Stockley, P.G.: Degenerate RNA packaging signals in the genome of satellite tobacco necrosis virus: implications for the assembly of a T = 1 capsid. J. Mol. Biol. 413, 51–65 (2011)
Article
Google Scholar
Ford, R.J., Barker, A.M., Bakker, S.E., Coutts, R.H., Ranson, N.A., Phillips, S.E.V., Pearson, A.R., Stockley, P.G.: Sequence-specific, RNA-protein interactions overcome electrostatic barriers preventing assembly of satellite tobacco necrosis virus coat protein. J. Mol. Biol. 425, 1050–1064 (2013)
Article
Google Scholar
Larson, S.B., McPherson, A.: Satellite tobacco mosaic virus RNA: structure and implications for assembly. Curr. Opin. Struck. Biol. 11, 59–65 (2001)
Article
Google Scholar
Schroeder, S.J., Stone, J.W., Bleckley, S., Gibbons, T., Mathews, D.M.: Ensemble of secondary structures for encapsidated satellite tobacco mosaic virus RNA consistent with chemical probing and crystallography constraints. Biophys J. 101, 167–175 (2011)
ADS
Article
Google Scholar
Zeng, Y., Larson, S.B., Heitsch, C.E., McPherson, A., Harvey, S.C.: A model for the structure of satellite tobacco mosaic virus. J. Struct. Biol. 180, 110–116 (2012)
Article
Google Scholar
Valegård, K., Murray, J.B., Stockley, P.G., Stonehouse, N.J., Liljas, L.: Crystal-structure of a bacteriophage-RNA coat protein-operator complex. Nature 371, 623–626 (1994)
ADS
Article
Google Scholar
Basnak, G., Morton, V.L., Rolfsson, O., Stonehouse, N.J., Ashcroft, A.E., Stockley, P.G.: Viral genomic ssRNA directs the pathway towards a T = 3 capsid. J. Mol. Biol. 395, 924–936 (2010)
Article
Google Scholar
Beckett, D., Uhlenbeck O.C.: Ribonucleoprotein complexes of R17 coat protein and a translational operator analog. J. Mol. Biol. 204, 927–938 (1988)
Article
Google Scholar
Beckett, D., Wu, H.N., Uhlenbeck O.C.: Roles of operator and non-operator RNA sequences in bacteriophage R17 capsid assembly. J. Mol. Biol. 204, 939–947 (1988)
Article
Google Scholar
Peabody, D.S: Role of the coat protein–RNA interaction in the life cycle of bacteriophage MS2. Mol. Gen. Genet. 254, 358–364 (1997)
Article
Google Scholar
Bunka, D.H.J., Stockley, P.G.: Aptamers come of age—at last. Nat. Rev. Microbiol. 4, 588–596 (2006)
Article
Google Scholar
Lane, S.W., Dennis, C.A., Lane, C.L., Trinh, C.H., Rizkallah, P.J., Stockley, P.G., Phillips, S.E.V.: Construction and crystal structure of recombinant STNV capsids. J. Mol. Biol. 413, 41–50 (2011)
Article
Google Scholar
Hirao, I., Spingola, M., Peabody, D.S., Ellington, A.D.: The limits of specificity: an experimental analysis with RNA aptamers to MS2 coat protein variants. Mol. Divers. 4, 75–89 (1998–1999)
Article
Google Scholar
Convery, M.A., Rowsell, S., Stonehouse, N.J., Ellington, A.D., Hirao, I., Murray, J.B., Peabody, D.S., Phillips, S.E.V., Stockley, P.G: Crystal structure of an RNA aptamer protein complex at 2.8 angstrom resolution. Nat. Struct. Biol. 5, 133–139 (1998)
Article
Google Scholar
Rowsell, S., Stonehouse, N.J., Convery, M.A., Adams, C.J., Ellington, A.D., Hirao, I., Peabody, D.S., Stockley, P.G., Phillips, S.E.V.: Crystal structures of a series of RNA aptamers complexed to the same protein target. Nat. Struct. Biol. 5, 970–975 (1998)
Article
Google Scholar
Toropova, K., Basnak, G., Twarock, R., Stockley, P.G., Ranson, N.A.: The three-dimensional structure of genomic RNA in bacteriophage MS2: implications for assembly. J. Mol. Biol. 375, 824–836 (2008)
Article
Google Scholar
Toropova, K., Stockley, P.G., Ranson, N.A.: Visualising a viral RNA genome poised for release from its receptor complex. J. Mol. Biol. 408, 408–419 (2011)
Article
Google Scholar
Dykeman, E.C., Stockley, P.G., Twarock, R.: How to build a viral capsid in the presence of genomic RNA? Phys. Rev. E 87, 022717 (2013)
ADS
Article
Google Scholar
Borodavka, A., Tuma, R., Stockley, P.G.: A two-stage mechanism of viral RNA compaction revealed by single molecule fluorescence. RNA Biol. 10, 1–9 (2013)
Article
Google Scholar