Abstract
Recombinant protein production has become an essential tool for providing the necessary amounts of a protein of interest to either research or therapy. The target proteins are not in every case soluble and/or correctly folded. That is why different production parameters, such as host, cultivation conditions, and co-expression of chaperones and foldases, are applied in order to gain functional recombinant proteins. Furthermore, the addition of folding-promoting agents during the cultivation is increasingly performed. The impact of all these strategies cannot be predicted and must be analyzed and optimized for the corresponding target protein. In this chapter recent cases of using folding-promoting agents in recombinant protein production are reviewed and discussed with respect to their in vivo applicability. Their effects in the cells are mostly not known in detail but at least partially comparable with the in vitro mode of action. The corresponding in vitro effects are also included in the chapter in order to facilitate a decision about their potential in vivo use.
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References
Baneyx, F. (1999) Recombinant protein expression in E. coli. Curr. Opin. Biotechnol. 10, 411–421.
Kopetzki, E., Schumacher, G., and Buckel, P. (1989) Control of formation of active soluble or inactive insoluble baker’s yeast alpha-glucosidase PI in Escherichia coli by induction and growth conditions. Mol. Gen. Genet. 216, 149–155.
Georgiou, G. and Valax, P. (1996) Expression of correctly folded proteins in E. coli. Curr. Opin. Biotechnol. 7, 190–197.
Bourot, S., Sire, O., Trautwetter, A., Touze, T., Wu, L. F., Blanco, C., et al. (2000) Glycine betaine-assisted protein folding in a lysA mutant of Escherichia coli. J. Biol. Chem. 275, 1050–1056.
Schaeffner, J., Winter, J., Rudolph, R., and Schwarz, E. (2001) Cosecretion of chaperones and low-molecular-size medium additives increases the yield of recombinant disulfide-bridged proteins. Appl. Environ. Microbiol. 67, 3994–4000.
Bao, Y. P., Cook, L. J., O’Donovan, D., Uyama, E., and Rubinsztein, D. C. (2002) Mammalian, yeast, bacterial, and chemical chaperones reduce aggregate formation and death in a cell model of oculopharyngeal muscular dystrophy. Biol. Chem. 277, 12263–12269.
Tatzelt, J., Prusiner, S. B., and Welch, W. J. (1996) Chemical chaperones interfere with the formation of scrapie prion protein. EMBO J. 15, 6363–6373.
Singer, M. A. and Lindquist, S. (1998) Multiple effects of trehalose on protein folding in vitro and in vivo. Mol. Cell. 1, 639–648.
Rosenbusch, J. P. (1990) Structural and functional properties of porin channels in E. coli outer membranes. Experientia. 46, 167–173.
Ostermeier, M. and Georgiou, G. (1994) The folding of bovine pancreatic trypsin inhibitor in the Escherichia coli periplasm. J. Biol. Chem. 269, 21072–21077.
Brass, J. M., Higgins, C. F., Foley M, Rugman, P. A., Birmingham, J., and Garland, P. B. (1986) Lateral diffusion of proteins in the periplasm of Escherichia coli. J. Bacteriol. 165, 787–795.
Van Wielink, J. E. and Duine, J. A. (1990) How big is the periplasmic space? Trends Biochem. Sci. 15, 136–137.
Wunderlich, M. and Glockshuber, R. (1993) In vivo control of redox potential during protein folding catalyzed by bacterial protein disulfide-isomerase (DsbA). J. Biol. Chem. 268, 24547–24550.
Diamant, S., Eliahu, N., Rosenthal, D., and Goloubinoff, P. (2001) Chemical chaperones regulate molecular chaperones in vitro and in cells under combined salt and heat stresses. J. Biol. Chem. 276, 39586–39591.
Caldas, T., Demont-Caulet, N., Ghazi, A., and Richarme, G. (1999) Thermoprotection by glycine betaine and choline. Microbiology. 145, 2543–2548.
Kempf, B. and Bremer, E. (1998) Uptake and synthesis of compatible solutes as microbial stress responses to high-osmolality environments. Arch. Microbiol. 170, 319–330.
Gill, R. T., DeLisa, M. P., Valdes, J. J., and Bentley, W. E. (2001) Genomic analysis of high-cell-density recombinant Escherichia coli fermentation and “cell conditioning” for improved recombinant protein yield. Biotechnol. Bioeng. 72, 85–95.
Bianchi, A. A. and Baneyx, F. (1999) Hyperosmotic shock induces the sigma32 and sigmaE stress regulons of Escherichia coli. Mol. Microbiol. 34, 1029–1038.
Neuhaus-Steinmetz, U. and Rensing, L. (1997) Heat shock protein induction by certain chemical stressors is correlated with their cytotoxicity, lipophilicity and protein-denaturing capacity. Toxicology. 123, 185–195.
Salotra, P., Singh, D. K., Seal, K. P., Krishna, N., Jaffe, H., and Bhatnagar, R. (1995) Expression of DnaK and GroEL homologs in Leuconostoc mesenteroides in response to heat shock, cold shock or chemical stress. FEMS Microbiol. Lett. 131, 57–62.
Jaenicke, R. (1998) Protein self-organization in vitro and in vivo: partitioning between physical biochemistry and cell biology. Biol. Chem. 379, 237–243.
Moore, J. T., Uppal, A., Maley, F., and Maley, G. F. (1993) Overcoming inclusion body formation in a high-level expression system. Protein Expr. Purif. 4, 160–163.
Kurokawa, Y., Yanagi, H., and Yura, T. (2000) Overexpression of protein disulfide isomerase DsbC stabilizes multiple-disulfide-bonded recombinant protein produced and transported to the periplasm in Escherichia coli. Appl. Environ. Microbiol. 66, 3960–3965.
Winter, J., Neubauer, P., Glockshuber, R., and Rudolph, R. (2000) Increased production of human proinsulin in the periplasmic space of Escherichia coli by fusion to DsbA. J. Biotechnol. 84, 175–185.
Wei, Y., Lee, J. M., Richmond, C., Blattner, F. R., Rafalski, J. A., and LaRossa, R. A. (2001) High-density microarray-mediated gene expression profiling of Escherichia coli. J. Bacteriol. 183, 545–556.
Blackwell, J. R. and Horgan, R. (1991) A novel strategy for production of a highly expressed recombinant protein in an active form. FEBS Lett. 295, 10–12.
Muramatsu, R., Negishi, T., Mimoto, T., Miura, A., Misawa, S., and Hayashi, H. (2002) Existence of beta-methylnorleucine in recombinant hirudin produced by Escherichia coli. J. Biotechnol. 93, 131–142.
Ingram, L. O., Dickens, B. F., and Buttke, T. M. (1980) Reversible effects of ethanol on E. coli. Adv. Exp. Med. Biol. 126, 299–337.
Ingram, L. O. (1981) Mechanism of lysis of Escherichia coli by ethanol and other chaotropic agents. J. Bacteriol. 146, 331–336.
Dwyer, D. S. (1999) Molecular simulation of the effects of alcohols on peptide structure. Biopolymers. 49, 635–645.
Barteri, M., Gaudiano, M. C., Mei, G., and Rosato, N. (1998) New stable folding of betalactoglobulin induced by 2-propanol. Biochim. Biophys. Acta. 1383, 317–326.
Wang, A. and Bolen, D. W. (1997) A naturally occurring protective system in urea-rich cells: mechanism of osmolyte protection of proteins against urea denaturation. Biochemistry 36, 9101–9108.
Rariy, R. V. and Klibanov, A. M. (1999) Protein refolding in predominantly organic media markedly enhanced by common salts. Biotechnol. Bioeng. 62, 704–710.
Kuivila, R. (2002) University of Oulu (Finland), personal communication.
Yancey, P. H., Clark, M. E., Hand, S. C., Bowlus, R. D., and Somero, G. N. (1982) Living with water stress: evolution of osmolyte systems. Science. 217, 1214–1222.
Ratnaparkhi, G. S. and Varadarajan, R. (2001) Osmolytes stabilize ribonuclease S by stabilizing its fragments S protein and S peptide to compact folding-competent states. J. Biol. Chem. 276, 28789–28798.
Chow, M. K., Devlin, G. L., and Bottomley, S. P. (2001) Osmolytes as modulators of conformational changes in serpins. Biol. Chem. 382, 1593–1599.
Barth, S., Huhn, M., Matthey, B., Klimka, A., Galinski, E. A., and Engert, A. (2000) Compatible-solute-supported periplasmic expression of functional recombinant proteins under stress conditions. Appl. Environ. Microbiol. 66, 1572–1579.
Ou, W. B., Park, Y. D., and Zhou, H. M. (2002) Effect of osmolytes as folding aids on creatine kinase refolding pathway. Int. J. Biochem. Cell. Biol. 34, 136–147.
Meng, F., Park, Y., and Zhou, H. (2001) Role of proline, glycerol, and heparin as protein folding aids during refolding of rabbit muscle creatine kinase. Int. J. Biochem. Cell. Biol. 33, 701–709.
Kumar, T. K., Samuel, D., Jayaraman, G., Srimathi, T., and Yu, C. (1998) The role of proline in the prevention of aggregation during protein folding in vitro. Biochem. Mol. Biol. Int. 46, 509–517.
Samuel, D., Kumar, T. K., Jayaraman, G., Yang, P. W., and Yu, C. (1997) Proline is a protein solubilizing solute. Biochem. Mol. Biol. Int. 41, 235–242.
Samuel, D., Kumar, T. K., Ganesh, G., Jayaraman, G., Yang, P. W., Chang, M. M., et al. Proline inhibits aggregation during protein refolding. Protein. Sci. 9, 344–352.
Wang, A. and Bolen, D. W. (1996) Effect of proline on lactate dehydrogenase activity: testing the generality and scope of the compatibility paradigm. Biophys. J. 71, 2117–2222.
Kita, Y. and Arakawa, T. (2002) Salts and glycine increase reversibility and decrease aggregation during thermal unfolding of ribonuclease-A. Biosci. Biotechnol. Biochem. 66, 880–882.
Kaderbhai, N., Karim, A., Hankey, W., Jenkins, G., Venning, J., and Kaderbhai, M. A. (1997) Glycine-induced extracellular secretion of a recombinant cytochrome expressed in Escherichia coli. Biotechnol. Appl. Biochem. 25, 53–61.
Buchner, J., Pastan, I., and Brinkmann, U. (1992) A method for increasing the yield of properly folded recombinant fusion proteins: single-chain immunotoxins from renaturation of bacterial inclusion bodies. Anal. Biochem. 205, 263–270.
Kim., T. K., Chung, J. Y., Lee, G. M., and Park, S. K. (2001) Arginine-enriched medium composition used for mass-producing recombinant protein in animal cell culture. Patent WO0144442.
Georgiou, G., Valax, P., Ostermeier, M., and Horowitz, P. M. (1994) Folding and aggregation of TEM beta-lactamase: analogies with the formation of inclusion bodies in Escherichia coli. Protein. Sci. 3, 1953–1960.
Bowden, G. A. and Georgiou, G. (1990) Folding and aggregation of beta-lactamase in the periplasmic space of Escherichia coli. J. Biol. Chem. 265, 16760–16766.
Wang, A., Robertson, A. D., and Bolen, D. W. (1995) Effects of a naturally occurring compatible osmolyte on the internal dynamics of ribonuclease A. Biochemistry 34, 15096–15104.
Sola-Penna, M., Ferreira-Pereira, A., Lemos, A. P., and Meyer-Fernandes, J. R. (1997) Carbohydrate protection of enzyme structure and function against guanidinium chloride treatment depends on the nature of carbohydrate and enzyme. Eur. J. Biochem. 248, 24–29.
Frye, K. J. and Royer, C. A. (1997) The kinetic basis for the stabilization of staphylococcal nuclease by xylose. Protein. Sci. 6, 789–793.
Leandro, P., Lechner, M. C., Tavares de Almeida, I., and Konecki, D. (2001) Glycerol increases the yield and activity of human phenylalanine hydroxylase mutant enzymes produced in a prokaryotic expression system. Mol. Genet. Metab. 73, 173–178.
Figler, R. A., Omote, H., Nakamoto, R. K., and Al-Shawi, M. K. (2000) Use of chemical chaperones in the yeast Saccharomyces cerevisiae to enhance heterologous membrane protein expression: high-yield expression and purification of human P-glycoprotein. Arch. Biochem. Biophys. 376, 34–46.
Ohnishi, T., Ohnishi, K., Wang, X., Takahashi, A., and Okaichi, K. (1999) Restoration of mutant TP53 to normal TP53 function by glycerol as a chemical chaperone. Radiat. Res. 151, 498–500.
Ghumman, B., Bertram, E. M., and Watts, T. H. (1998) Chemical chaperones enhance superantigen and conventional antigen presentation by HLA-DM-deficient as well as HLA-DM-sufficient antigen-presenting cells and enhance IgG2a production in vivo. J. Immunol. 161, 3262–3270.
Bai, C., Biwersi, J., Verkman, A. S., and Matthay, M. A. (1998) A mouse model to test the in vivo efficacy of chemical chaperones. J. Pharmacol. Toxicol. Methods 40, 39–45.
De Sanctis, G., Maranesi, A., Ferri, T., Poscia, A., Ascoli, F., and Santucci, R. (1996) Influence of glycerol on the structure and redox properties of horse heart cytochrome C. A circular dichroism and electrochemical study. J. Protein. Chem. 15, 599–606.
Zhi, W., Landry, S. J., Gierasch, L. M., and Srere, P. A. (1992) Renaturation of citrate synthase: influence of denaturant and folding assistants. Protein. Sci. 1, 522–529.
Saunders, A. J., Davis-Searles, P. R., Allen, D. L., Pielak, G. J., and Erie, D. A. (2000) Osmolyte-induced changes in protein conformational equilibria. Biopolymers. 53, 293–307.
Voziyan, P. A. and Fisher, M. T. (2002) Polyols induce ATP-independent folding of GroEL-bound bacterial glutamine synthetase. Arch. Biochem. Biophys. 397, 293–297.
Taylor, L. S., York, P., Williams, A. C., Edwards, H. G., Mehta, V., Jackson, G. S., et al. (1995) Sucrose reduces the efficiency of protein denaturation by a chaotropic agent. Biochim. Biophys. Acta. 1253, 39–46.
Majumder, A., Basak, S., Raha, T., Chowdhury, S. P., Chattopadhyay, D., and Roy, S. (2001) Effect of osmolytes and chaperone-like action of P-protein on folding of nucleocapsid protein of Chandipura virus. J. Biol. Chem. 276, 30948–30955.
Baskakov, I., Wang, A., and Bolen, D. W. (1998) Trimethylamine-N-oxide counteracts urea effects on rabbit muscle lactate dehydrogenase function: a test of the counteraction hypothesis. Biophys. J. 74, 2666–2673.
Song, J. L. and Chuang, D. T. (2001) Natural osmolyte trimethylamine N-oxide corrects assembly defects of mutant branched-chain alpha-ketoacid decarboxylase in maple syrup urine disease. J. Biol. Chem. 276, 40241–40246.
Samuelsson, E., Jonasson, P., Viklund, F., Nilsson, B., and Uhlen, M. (1996) Affinity-assisted in vivo folding of a secreted human peptide hormone in Escherichia coli. Nat. Biotechnol. 14, 751–755.
Hwang, C., Sinskey, A. J., and Lodish, H. F. (1992) Oxidized redox state of glutathione in the endoplasmic reticulum. Science 257, 1496–1502.
Bardwell, J. C. (1994) Building bridges: disulphide bond formation in the cell. Mol. Microbiol. 14, 199–205.
Wittung-Stafshede, P. (2002) Role of cofactors in protein folding. Acc. Chem. Res. 35, 201–208.
Zou, J. and Sugimoto, N. (2000) Complexation of peptide with Cu2+ responsible to inducing and enhancing the formation of alpha-helix conformation. Biometals 13, 349–359.
Beck, R. and Burtscher, H. (1994) Expression of human placental alkaline phosphatase in Escherichia coli. Protein. Expr. Purif. 5, 192–197.
Baneyx, F., Ayling, A., Palumbo, T., Thomas, D., and Georgiou, G. (1991) Optimization of growth conditions for the production of proteolytically-sensitive proteins in the periplasmic space of Escherichia coli. Appl. Microbiol. Biotechnol. 36, 14–20.
Machida, S., Ogawa, S., Xiaohua, S., Takaha, T., Fujii, K., and Hayashi, K. (2000) Cycloamylose as an efficient artificial chaperone for protein refolding. FEBS Lett. 486, 131–135.
Dong, X. Y., Shi, J. H., and Sun, Y. (2002) Cooperative effect of artificial chaperones and guanidinium chloride on lysozyme renaturation at high concentrations. Biotechnol. Prog. 18, 663–665.
Woycechowsky, K. J., Wittrup, K. D., and Raines, R. T. (1999) A small-molecule catalyst of protein folding in vitro and in vivo. Chem. Biol. 6, 871–879.
Winter, J., Lilie, H., and Rudolph, R. (2002) Recombinant expression and in vitro folding of proinsulin are stimulated by the synthetic dithiol Vectrase-P. FEMS Microbiol. Lett. 213, 225–230.
Schwarz, E., Rudolph, R., Ambrosius, D., and Schaeffner, J. (2001) Process for the production of naturally folded and secreted proteins by co-secretion of molecular chaperones. Patent EP1077262
Schroeckh, V., Hortschansky, P., Fricke, S., Luckenbach, G. A., and Riesenberg, D. (2000) Expression of soluble, recombinant alphav-beta3 integrin fragments in Escherichia coli. Microbiol. Res. 155, 165–177.
Glockshuber, R., Skerra, A., Rudolph, R., and Wunderlich, M. (1992) Improvement of the secretion yield of proteins with a disulfide bridge. Patent EP0510658.
Thomas, J. G. and Baneyx, F. (1997) Divergent effects of chaperone overexpression and ethanol supplementation on inclusion body formation in recombinant Escherichia coli. Protein Expr. Purif. 11, 289–296.
Gustafson, C. and Tagesson, C. (1985) Influence of organic solvent mixtures on biological membranes. Br. J. Ind. Med. 42, 591–595.
Hartl, F. U. and Hayer-Hartl, M. (2002) Molecular chaperones in the cytosol: from nascent chain to folded protein. Science 295, 1852–1858.
Schlieker, C., Bukau, B., and Mogk, A. (2002) Prevention and reversion of protein aggregation by molecular chaperones in the E. coli cytosol: implications for their applicability in biotechnology. J. Biotechnol. 96, 13–21.
Fahnert, B. (2001) Rekombinantes humanes BMP-2 aus Escherichia coli—Strategien zur Expression und Funktionalisierung., Doctorate Thesis, Friedrich-Schiller-University Jena (Germany).
Voziyan, P. A., Jadhav, L., and Fisher, M. T. (2000) Refolding a glutamine synthetase truncation mutant in vitro: identifying superior conditions using a combination of chaperonins and osmolytes. J. Pharm. Sci. 89, 1036–1045.
Fisher, M. T. and Voziyan, P. (2002) Chaperonin and osmolyte protein folding and related screening methods. Patent US2002006636.
Ko, Y. H. and Pedersen, P. (2001) Methods for identifying an agent that corrects defective protein folding. Patent WO0121652.
Kirsch, T., Sebald, W., and Dreyer, M. K. (2000) Crystal structure of the BMP-2-BRIA ectodomain complex. Nat. Struct. Biol. 7, 492–496.
Kirsch, T., Nickel, J., and Sebald, W. (2000) Isolation of recombinant BMP receptor IA ectodomain and its 2∶1 complex with BMP-2. FEBS Lett. 468, 215–219.
Fahnert, B., Hahn, D., and Guthke, R. (2002) Knowledge-based assessment of gene expression data from chemiluminescence detection. J. Biotechnol. 94, 23–35.
Braun, P., Hu, Y., Shen, B., Halleck, A., Koundinya, M., Harlow, E., et al. (2002) Proteome-scale purification of human proteins from bacteria. Proc. Natl. Acad. Sci. USA 99, 2654–2659.
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Fahnert, B. (2004). Folding-Promoting Agents in Recombinant Protein Production. In: Balbás, P., Lorence, A. (eds) Recombinant Gene Expression. Methods in Molecular Biology, vol 267. Humana Press. https://doi.org/10.1385/1-59259-774-2:053
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