Skip to main content

PCR-Based Cloning and Differential Screening of RNAs from Xenopus Primordial Germ Cells

Cloning Uniquely Expressed RNAs from Rare Cells

  • Protocol
Germ Cell Protocols

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 254))

Abstract

Primordial germ cells (PGCs) are a small population of unique cells from which all germ cells arise in an organism. In this sense, PGCs can be considered the stem cells of the species. An important characteristic of PGCs is their ability to remain developmentally totipotent,whereas somatic cells become restricted in their fates. Understanding the genetic program that underlies the retention of totipotency is a major goal in the stem cell field. To accomplish this goal, methods must be considered for both the isolation of these cells and the purification of the RNAs they express. The isolation of PGCs from any organism presents certain challenges. Because PGCs arise outside the gonad during early embryogenesis, their exact location within a germ layer is unknown. In addition, PGCs are relatively rare in number compared to somatic cells (on the order of 0.05% or less). This chapter presents detailed procedures for isolating live PGCs from Xenopus laevis embryos and for cloning their expressed genes, should be applicable to other organisms that have PGCs rich in mitochondria.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Savage R. M. and Danilchik M. V. (1993) Dynamics of germ plasm localization and its inhibition by ultraviolet irradiation in early cleavage Xenopus embryos. Dev. Biol. 157, 371–82.

    Article  PubMed  CAS  Google Scholar 

  2. Sargeant, P., Farndale, R. W., and Sage S. O. (1993) ADP-and Thapsigargin-evoked Ca2+ entry and protein-tyrosine phosphorylation are inhibited by the tyrosine kinase inhibitors genistein and methyl-2,5-dihydroxycinnamate in fura-2-loaded human platelets. J. Biol. Chem. 268, 18,151–18,156.

    PubMed  CAS  Google Scholar 

  3. Amlal, H., Paillard, M., and Bichara, M. (1994) NH4+ transport pathways in cells of medullary thick ascending limb of rat kidney. NH4+ conductance and K+/NH4+(H+) antiport. J. Biol. Chem. 269, 21,962–21,971.

    PubMed  CAS  Google Scholar 

  4. Hudson, C. and Woodland, H. R., (1998) Xpat, a gene expressed specifically in germ plasm and primordial germ cells of Xenopus laevis. Mech. Dev. 73, 159–168.

    Article  PubMed  CAS  Google Scholar 

  5. Mosquera, L., Forristall, C., Zhou, Y., and King, M. L.(1993) A mRNA localized to the vegetal cortex of Xenopus oocytes encodes a protein with a nanos-like zinc finger domain. Development 117, 377–386.

    PubMed  CAS  Google Scholar 

  6. Hubank M. and Schatz D. G. (1999) cDNA representational difference analysis: a sensitive and flexible method for identification of differentially expressed genes. Methods Enzymol. 303, 325–349.

    Article  PubMed  CAS  Google Scholar 

  7. Diatchenko, L., Lukyanov, S., Lau, Y. F., and Siebert, P. D. (1999) Suppression subtractive hybridization: a versatile method for identifying differentially expressed genes. Methods Enzymol. 303, 349–380.

    Article  PubMed  CAS  Google Scholar 

  8. Sive, H. L., Grainger, R. M., and Harland, R. M. (2000) Early Development of Xenopus laevis: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.

    Google Scholar 

  9. O’Neill, M. J. and Sinclair, A. H. (1997) Isolation of rare transcripts by representational difference analysis. Nucleic Acids Res. 25, 2681–2682.

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2004 Humana Press Inc.

About this protocol

Cite this protocol

Venkataraman, T., Dancausse, E., King, M.L. (2004). PCR-Based Cloning and Differential Screening of RNAs from Xenopus Primordial Germ Cells. In: Schatten, H. (eds) Germ Cell Protocols. Methods in Molecular Biology™, vol 254. Humana Press. https://doi.org/10.1385/1-59259-741-6:067

Download citation

  • DOI: https://doi.org/10.1385/1-59259-741-6:067

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-257-5

  • Online ISBN: 978-1-59259-741-3

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics