Skip to main content

Comparative Genomic Hybridization Analysis

  • Protocol
Molecular Analysis of Cancer

Part of the book series: Methods in Molecular Medicine ((MIMM,volume 68))

  • 346 Accesses

Abstract

Molecular genetic investigations of human tumors have increased our understanding of the mechanistic relationship between chromosome abnormalities and cancer. In leukemias and lymphomas, for which extensive karyotypic analysis has been possible, specific translocations and inversions have been identified that result in the deregulation of protooncogenes or the creation of aberrant fusion genes (1,2). Similarly, certain sarcomas (e.g., Ewing and synovial sarcomas) are characterized by specific translocations (3,4). In many cases, these translocations represent the only chromosome alteration present in the tumor cells, consistent with the notion that such changes play a critical role in the pathogenesis of these neoplasms.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Roulston, D. and Le Beau, M. M. (1997) Cytogenetic analysis of hematologic malignant diseases, in The AGT Cytogenetics Laboratory Manual (Barch, M. J., Knutsen, T., and Spurbeck, J., eds.), Lippincott-Raven, Philadelphia, PA, pp. 325–372.

    Google Scholar 

  2. Rowley, J. D. (1998) The critical role of chromosome translocations in human leukemias. Annu. Rev. Genet. 32, 495–519.

    Article  PubMed  CAS  Google Scholar 

  3. Mitelman, F., Martens, F., and Johansson, B. (1997) A breakpoint map of recurrent chromosomal rearrangements in human neoplasia. Nat. Genet. 15, 417–474.

    Article  PubMed  CAS  Google Scholar 

  4. Bridge, J. A. and Sandberg, A. A. (2000) Cytogenetic and molecular genetic techniques as adjunctive approaches in the diagnosis of bone and soft tissue tumors. Skel. Radiol. 29, 249–258.

    Article  CAS  Google Scholar 

  5. Kallioniemi, A., Kallioniemi, O. P., Sudar, D., Rutovitz, D., Gray, J. W., Waldman, F., et al. (1992) Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors. Science 258, 818–821.

    Article  PubMed  CAS  Google Scholar 

  6. Rooney, P. H., Murray, G. I., Stevenson, D. A., Haites, N. E., Cassidy, J., and McLeod, H. L. (1999) Comparative genomic hybridization and chromosomal instability in solid tumours. Brit. J. Cancer 80, 862–873.

    Article  PubMed  CAS  Google Scholar 

  7. Karhu, R., Kahkonen, M., Kuukasjarvi, T., Pennanen, S., Tirkkonen, M., and Kallioniemi, O. (1997) Quality control of CGH: impact of metaphase chromosomes and the dynamic range of hybridization. Cytometry 28, 198–205.

    Article  PubMed  CAS  Google Scholar 

  8. Piper, J., Rutovitz, D., Sudar, D., Kallioniemi, A., Kallioniemi, O. P., Waldman, F. M., et al. (1995) Computer image analysis of comparative genomic hybridization. Cytometry 19, 10–26.

    Article  PubMed  CAS  Google Scholar 

  9. du Manoir, S., Schrock, E., Bentz, M., Speicher, M. R., Joos, S., Ried, T., et al. (1995) Quantitative analysis of comparative genomic hybridization. Cytometry 19, 27–41.

    Article  PubMed  Google Scholar 

  10. Hemminki, A., Tomlinson, I., Markie, D., Jarvinen, H., Sistonen, P., Bjorkqvist, A. M., et al. (1997) Localization of a susceptibility locus for Peutz-Jeghers syndrome to 19p using comparative genomic hybridization and targeted linkage analysis. Nat. Genet. 15, 87–90.

    Article  PubMed  CAS  Google Scholar 

  11. Kallioniemi, O. P., Kallioniemi, A., Piper, J., Isola, J., Waldman, F. M., Gray, J. W., and Pinkel, D. (1994) Optimizing comparative genomic hybridization for analysis of DNA sequence copy number changes in solid tumors. Genes Chromosomes Cancer 10, 231–243.

    Article  PubMed  CAS  Google Scholar 

  12. Balsara, B. R., Sonoda, G., du Manoir, S., Siegfried, J. M., Gabrielson, E., and Testa, J. R. (1997) Comparative genomic hybridization analysis detects frequent, often high-level, overrepresentation of DNA sequences at 3q, 5p, 7p, and 8q in human non-small cell lung carcinomas. Cancer Res. 57, 2116–2120.

    PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2002 Humana Press Inc.

About this protocol

Cite this protocol

Balsara, B.R., Pei, J., Testa, J.R. (2002). Comparative Genomic Hybridization Analysis. In: Boultwood, J., Fidler, C. (eds) Molecular Analysis of Cancer. Methods in Molecular Medicine, vol 68. Humana Press. https://doi.org/10.1385/1-59259-135-3:045

Download citation

  • DOI: https://doi.org/10.1385/1-59259-135-3:045

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-622-2

  • Online ISBN: 978-1-59259-135-0

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics