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Purification of Large Cytosolic Proteases for In Vitro Assays: 20S and 26S Proteasomes

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Antigen Processing

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 960))

Abstract

Proteasomes are the main cytosolic proteases responsible for generating peptides for antigen processing and presentation in the MHC (major histocompatibility complex) class-I pathway. Purified 20S and 26S proteasomes have been widely used to study both specificity and efficiency of antigen processing. Here, we describe the purification of active human 20S and 26S proteasomes from human erythrocytes by DEAE-ion exchange chromatography, ammonium sulfate precipitation, glycerol density gradient centrifugation, and Superose-6 size exclusion chromatography and their characterization using fluorogenic substrates and specific inhibitors.

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References

  1. Ciechanover A (2005) Proteolysis: from the lysosome to ubiquitin and the proteasome. Nat Rev Mol Cell Biol 6(1):79–87. doi:nrm1552 (pii) 10.1038/nrm1552

    Article  CAS  PubMed  Google Scholar 

  2. Glickman MH, Rubin DM, Coux O, Wefes I, Pfeifer G, Cjeka Z, Baumeister W, Fried VA, Finley D (1998) A subcomplex of the proteasome regulatory particle required for ubiquitin-conjugate degradation and related to the COP9-signalosome and eIF3. Cell 94(5):615–623. doi:S0092-8674(00)81603-7 (pii)

    Google Scholar 

  3. Groll M, Ditzel L, Lowe J, Stock D, Bochtler M, Bartunik HD, Huber R (1997) Structure of 20S proteasome from yeast at 2.4 A resolution. Nature 386(6624):463–471. doi:10.1038/386463a0

    Article  CAS  PubMed  Google Scholar 

  4. Tenzer S, Stoltze L, Schonfisch B, Dengjel J, Muller M, Stevanovic S, Rammensee HG, Schild H (2004) Quantitative analysis of prion-protein degradation by constitutive and immuno-20S proteasomes indicates differences correlated with disease susceptibility. J Immunol 172(2):1083–1091

    Article  CAS  PubMed  Google Scholar 

  5. Kisselev AF, Akopian TN, Woo KM, Goldberg AL (1999) The sizes of peptides generated from protein by mammalian 26 and 20S proteasomes. Implications for understanding the degradative mechanism and antigen presentation. J Biol Chem 274(6):3363–3371

    Article  CAS  PubMed  Google Scholar 

  6. Stoltze L, Schirle M, Schwarz G, Schroter C, Thompson MW, Hersh LB, Kalbacher H, Stevanovic S, Rammensee HG, Schild H (2000) Two new proteases in the MHC class I processing pathway. Nat Immunol 1(5):413–418. doi:10.1038/80852

    Article  CAS  PubMed  Google Scholar 

  7. Enomoto Y, Bharti A, Khaleque AA, Song B, Liu C, Apostolopoulos V, Xing PX, Calderwood SK, Gong J (2006) Enhanced immunogenicity of heat shock protein 70 peptide complexes from dendritic cell-tumor fusion cells. J Immunol 177(9):5946–5955

    Article  CAS  PubMed  Google Scholar 

  8. Kloetzel PM, Ossendorp F (2004) Proteasome and peptidase function in MHC-class-I-mediated antigen presentation. Curr Opin Immunol 16(1):76–81. doi:S095279150300178X (pii)

    Article  CAS  PubMed  Google Scholar 

  9. Asemissen AM, Keilholz U, Tenzer S, Muller M, Walter S, Stevanovic S, Schild H, Letsch A, Thiel E, Rammensee HG, Scheibenbogen C (2006) Identification of a highly immunogenic HLA-A*01-binding T cell epitope of WT1. Clin Cancer Res 12(24):7476–7482. doi:12/24/7476 (pii) 10.1158/1078-0432.CCR-06-1337

    Article  CAS  PubMed  Google Scholar 

  10. Tenzer S, Wee E, Burgevin A, Stewart-Jones G, Friis L, Lamberth K, Chang CH, Harndahl M, Weimershaus M, Gerstoft J, Akkad N, Klenerman P, Fugger L, Jones EY, McMichael AJ, Buus S, Schild H, van Endert P, Iversen AK (2009) Antigen processing influences HIV-specific cytotoxic T lymphocyte immunodominance. Nat Immunol 10(6):636–646. doi:ni.1728 (pii) 10.1038/ni.1728

    Article  CAS  PubMed  Google Scholar 

  11. Nussbaum AK, Kuttler C, Hadeler KP, Rammensee HG, Schild H (2001) PAProC: a prediction algorithm for proteasomal cleavages available on the WWW. Immunogenetics 53(2):87–94

    Article  CAS  PubMed  Google Scholar 

  12. Larsen MV, Lundegaard C, Lamberth K, Buus S, Brunak S, Lund O, Nielsen M (2005) An integrative approach to CTL epitope prediction: a combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions. Eur J Immunol 35(8):2295–2303. doi:10.1002/eji.200425811

    Article  CAS  PubMed  Google Scholar 

  13. Tenzer S, Peters B, Bulik S, Schoor O, Lemmel C, Schatz MM, Kloetzel PM, Rammensee HG, Schild H, Holzhutter HG (2005) Modeling the MHC class I pathway by combining predictions of proteasomal cleavage, TAP transport and MHC class I binding. Cell Mol Life Sci 62(9):1025–1037. doi:10.1007/s00018-005-4528-2

    Article  CAS  PubMed  Google Scholar 

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Acknowledgments

This work was supported by the Deutsche Forschungsgemeinschaft SFB490, E6 and the Forschungszentrum Immunologie (FZI CF7) of the University Mainz

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Correspondence to Stefan Tenzer .

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Tenzer, S., Hain, T., Berger, H., Schild, H. (2013). Purification of Large Cytosolic Proteases for In Vitro Assays: 20S and 26S Proteasomes. In: van Endert, P. (eds) Antigen Processing. Methods in Molecular Biology™, vol 960. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-218-6_1

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  • DOI: https://doi.org/10.1007/978-1-62703-218-6_1

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  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-62703-217-9

  • Online ISBN: 978-1-62703-218-6

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