Skip to main content

Search for Amyloid-Binding Proteins by Affinity Chromatography

  • Protocol
  • First Online:
Amyloid Proteins

Part of the book series: Methods in Molecular Biology ((MIMB,volume 849))

Abstract

‘Amyloid binging proteins’ is a generic term used to designate proteins that interact with different forms of amyloidogenic peptides or proteins and that, as a result, may modulate their physiological and pathological functions by altering solubility, transport, clearance, degradation, and fibril formation. We describe a simple affinity chromatography protocol to isolate and characterize amyloid-binding proteins based on the use of sequential elution steps that may provide further information on the type of binding interaction. As an example, we depict the application of this protocol to the study of Alzheimer’s amyloid β (Aβ) peptide-binding proteins derived from human plasma. Biochemical analysis of the proteins eluted under different conditions identified serum amyloid P component (SAP) and apolipoprotein J (clusterin) as the main plasma Aβ-binding proteins while various apolipoproteins (apoA-IV, apoE, and apoA-I), as well as albumin (HSA) and fibulin were identified as minor contributors.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Abbreviations

ACT:

α1-Antichymotrypsin

AD:

Alzheimer’s disease

apoA-I:

Apolipoprotein A-I

apoA-IV:

Apolipoprotein A-IV

apoE:

Apolipoprotein E

apoJ:

Apolipoprotein J (clusterin)

CAPS:

3-Cyclohexilamino-1-propanesulphonic acid

CNBr:

Cyanogen bromide

ELISA:

Enzyme-linked immunosorbent assay

HSA:

Human serum albumin

NHS:

N-hydroxysuccinimide

SAP:

Serum amyloid P component

Vn:

Vitronectin

References

  1. Ghiso, J., and Frangione, B. (2002) Amyloidosis and Alzheimer’s disease. Adv. Drug Delivery Rev. 54, 1539–1551.

    Article  CAS  Google Scholar 

  2. Coria, F., Castano, E., Prelli, F., Larrondo-Lillo, M., van Duinen, S., Shelanski, M. L et al. (1988) Isolation and characterization of amyloid P component from Alzheimer’s disease and other types of cerebral amyloidosis. Lab. Invest. 58, 454–458.

    PubMed  CAS  Google Scholar 

  3. Kalaria, R. N., Galloway, P. G., and Perry, G. (1991) Widespread serum amyloid P immunoreactivity in cortical amyloid deposits and the neurofibrillary pathology of Alzheimer’s disease and other degenerative disorders. Neuropathol. Appl. Neurobiol. 17, 189–201.

    Article  PubMed  CAS  Google Scholar 

  4. Namba, Y., Tomonaga, M., Kawasaki, H., Otomo, E., and Ikeda, K. (1991) Apolipoprotein E immunoreactivity in cerebral amyloid deposits and neurofibrillary tangles in Alzheimer’s disease and kuru plaque amyloid in Creutzfeldt-Jakob disease. Brain Res. 541, 163–166.

    Article  PubMed  CAS  Google Scholar 

  5. Wisniewski, T., and Frangione, B. (1992) Apolipoprotein E: a pathological chaperone protein in patients with cerebral and systemic amyloid. Neurosci Lett. 135, 235–238.

    Article  PubMed  CAS  Google Scholar 

  6. Yamada, T., Kakihara, T., Gejyo, F., and Okada, M. (1994) A monoclonal antibody recognizing apolipoprotein E peptides in systemic amyloid deposits. Ann. Clin. Lab. Sci. 24, 243–249.

    PubMed  CAS  Google Scholar 

  7. Kindy, M. S., King, A. R., Perry, G., de Beer, M. C., and de Beer, F. C. (1995) Association of apolipoprotein E with murine amyloid A protein amyloid. Lab Invest 73, 469–475.

    PubMed  CAS  Google Scholar 

  8. Rostagno, A., and Ghiso, J. (2003) Amyloidosis. In M Aminoff and R Daroff, eds. Encyclopedia of neurological sciences. 1, pp. 129–135. Academic Press, San Diego.

    Google Scholar 

  9. Ghiso, J., Rostagno, A., Tomidokoro, Y., Lashley, T., Holton, J., et al. (2005) Familial British and Danish dementias. In JD Sipe, ed., Amyloid proteins. The beta sheet conformation and disease. 2, pp. 515–526. Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany.

    Google Scholar 

  10. Rostagno, A., Tomidokoro, Y., Lashley, T., Ng, D., Plant, G., et al. (2005) Chromosome 13 dementias. Cell Mol Life Sci. 62, 1814–25.

    Article  PubMed  CAS  Google Scholar 

  11. Veerhuis, R., Boshuizen, R. S., and Familian, A. (2005) Amyloid associated proteins in Alzheimer’s and prion disease. Curr. Drug Targets CNS & Neurological Dis. 4, 235–248.

    Article  CAS  Google Scholar 

  12. Gallo, G., Picken, M., Frangione, B., and Buxbaum, J. N. (1988) Nonamyloidotic monoclonal immunoglobulin deposits lack amyloid P component. Mod. Pathol. 1, 453–456.

    PubMed  CAS  Google Scholar 

  13. Gallo, G., Wisniewski, T., Choi-Miura, N. H., Ghiso, J., and Frangione, B. (1994) Potential role of apolipoprotein-E in fibrillogenesis. Am. J. Pathology 145, 526–530.

    CAS  Google Scholar 

  14. Botto, M., Hawkins, P. N., Bickerstaff, M. C. M., Herbert, J., Bygrave, A. E., et al. (1997) Amyloid deposition is delayed in mice with targeted deletion of serum amyloid P component. Nature Med. 3, 855–859.

    Article  PubMed  CAS  Google Scholar 

  15. Holtzman, D. M., Bales, K. R., Wu, S., Bhat, P., Parsadanian, M., et al. (1999) Expression of human apolipoprotein E reduces amyloid-beta deposition in a mouse model of Alzheimer’s disease. J. Clin. Invest. 103, R15–R21.

    Article  PubMed  CAS  Google Scholar 

  16. Glenner, G. G., Wong, C. W. (1984) Alzheimer’s disease: initial report of the purification and characterization of a novel cerebrovascular amyloid protein. Biochem Biophys Res Commun 120, 885–890.

    Article  PubMed  CAS  Google Scholar 

  17. Masters, C. L., Multhaup, G., Simms, G., Pottgiesser, J., Martins, R. N., Beyreuther, K. (1985) Neuronal origin of a cerebral amyloid: neurofibrillary tangles of Alzheimer’s disease contain the same protein as the amyloid of plaque cores and blood vessels. EMBO J. 4, 2757–2763.

    PubMed  CAS  Google Scholar 

  18. Prelli, F., Castano, E. M., Glenner, G. G., and Frangione, B. (1988) Differences between vascular and plaque core amyloid in Alzheimer’s disease. J. Neurochem. 51, 648–651.

    Article  PubMed  CAS  Google Scholar 

  19. Seubert, P., Vigo-Pelfrey, C., Esch, F., Lee, M., Dovey, H., Davis, D. et al (1992) Isolation and quantitation of soluble Alzheimer’s β-peptide from bilogical fluids. Nature 359, 325–327.

    Article  PubMed  CAS  Google Scholar 

  20. Shoji, M., Golde, T. E., Ghiso, J., Cheung, T. T., Estus S., Shaffer, L. M. et al. (1992) Production of the Alzheimer amyloid beta protein by normal proteolytic processing. Science 258, 126–129.

    Article  PubMed  CAS  Google Scholar 

  21. Haass, C., Koo, E. H., Mellon, A., Hung, A. Y., Selkoe, D. J. (1992) Targeting of cell-surface beta-amyloid precursor protein to lysosomes: alternative processing into amyloid-bearing fragments. Nature 357, 500–503.

    Article  PubMed  CAS  Google Scholar 

  22. Ghiso, J., Calero, M., Matsubara, E., Governale, S., Chuba, J., Beavis, R, et al. (1997) Alzheimer’s soluble amyloid beta is a normal component of human urine. FEBS Lett. 408, 105–108.

    Article  PubMed  CAS  Google Scholar 

  23. Tabaton, M., Nunzi, M. G., Xue, R., Usiak, M., Autilio-Gambetti, L., Gambetti, P. (1994) Soluble amyloid beta-protein is a marker of Alzheimer amyloid in brain but not in cerebrospinal fluid. Biochem Biophys Res Commun. 200, 1598–1603.

    Article  PubMed  CAS  Google Scholar 

  24. Golabek, A., Marques, M. A., Lalowski, M., Wisniewski, T. (1995). Amyloid β binding proteins in vitro and in normal human cerebrospinal fluid. Neuroscience Lett. 191, 79–82.

    Article  CAS  Google Scholar 

  25. Ghiso, J., Matsubara, E., Koudinov, A., Choi-Miura, N. H., Tomita, M., Wisniewski, et al. (1993) The cerebrospinal-fluid soluble form of Alzheimer’s amyloid beta is complexed to SP-40,40 (apolipoprotein J), an inhibitor of the complement membrane-attack complex. Biochem J. 293, 27–30.

    Google Scholar 

  26. LaDu, M. J., Lukens, J. R., Reardon, C. A., Getz, G. S. (1997) Association of human, rat, and rabbit apolipoprotein E with beta-amyloid. J Neurosci Res. 49, 9–18.

    Article  PubMed  CAS  Google Scholar 

  27. Wisniewski, T., Castaño, E. M., Golabek, A. A., Vogel, T., and Frangione, B. (1993) Acceleration of Alzheimer’s fibril formation by apolipoprotein E in vitro. Am. J. Pathology 145, 1030–1035.

    Google Scholar 

  28. Wegiel, J., Chauhan, A., Wisniewski, H.M., Nowakowski, J., Wang, K.C., Le Vine, H. (1996) Promotion of synthetic amyloid beta-peptide fibrillization by cell culture media and cessation of fibrillization by serum. Neurosci. Lett. 211, 151–154.

    Article  PubMed  CAS  Google Scholar 

  29. LaDu, M. J., Falduto, M. T., Manelli, A. M., Reardon, C. A., Getz, G. S., and Frail, D. E. (1994) Isoform-specific binding of apolipoprotein E to beta-amyloid. J. Biol. Chem. 269, 23403–23406.

    PubMed  CAS  Google Scholar 

  30. Ma, J., Yee, A., Brewer, H. B., Jr., Das, S. and Potter, H. (1994) Amyloid-associated proteins alpha 1-antichymotrypsin and apolipoprotein E promote assembly of Alzheimer beta-protein into filaments. Nature, 392, 92–94.

    Article  Google Scholar 

  31. Webster, S., O’Barr, S., and Rogers, J. (1994) Enhanced aggregation and β structure of amyloid β peptide after coincubation with C1q. J. Neurosci. Res. 39, 448–456.

    Article  PubMed  CAS  Google Scholar 

  32. Tennent, G. A., Lovat, L. B., and Pepys, M. B. (1995) Serum amyloid P component prevents proteolysis of the amyloid fibrils of Alzheimer’s disease and systemic amyloidosis. Proc. Natl. Acad. Sci. USA, 92, 4299–4303.

    Article  PubMed  CAS  Google Scholar 

  33. Matsubara, E., Soto, C., Governale, S., Frangione, B., and Ghiso, J. (1996) Apolipoprotein J and Alzheimer’s amyloid beta solubility. Biochem J., 316, 671–679.

    PubMed  CAS  Google Scholar 

  34. Lambert, M. P., Barlow, A. K., Chromy, B. A., Edwards, C., Freed, R., et al. (1998) Diffusible, nonfibrillar ligands derived from Aβ1–42 are potent central nervous system neurotoxins. Proc. Natl. Acad. Sci. USA, 95, 6448–6453.

    Article  PubMed  CAS  Google Scholar 

  35. Urh, M., Simpson, D., Zhao, K. (2009) Affinity chromatography: general methods. Methods Enzymol. 463, 417–438.

    Article  PubMed  CAS  Google Scholar 

  36. Ovodenko, B., Rostagno, A., Neubert, T. A., Shetty, V., Thomas, S., et al. (2007) Proteomic analysis of exfoliation deposits. Invest. Ophthalmol. Vis. Sci., 48, 1447–1457.

    Article  PubMed  Google Scholar 

  37. Wilson, M. R., Easterbrook-Smith, S. B. (1992) Clusterin binds by a multivalent mechanism to the Fc and Fab regions of IgG. Biochim. Biophys. Acta 1159, 319–326.

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

This work was supported by grants from the Fundación CIEN-ISCIII (MPY 1308/08) and CIBERNED to MC and from the National Institutes of Health NS051715 to AR and AG030539 to JG.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Miguel Calero .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2012 Springer Science+Business Media, LLC

About this protocol

Cite this protocol

Calero, M., Rostagno, A., Ghiso, J. (2012). Search for Amyloid-Binding Proteins by Affinity Chromatography. In: Sigurdsson, E., Calero, M., Gasset, M. (eds) Amyloid Proteins. Methods in Molecular Biology, vol 849. Humana Press. https://doi.org/10.1007/978-1-61779-551-0_15

Download citation

  • DOI: https://doi.org/10.1007/978-1-61779-551-0_15

  • Published:

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-61779-550-3

  • Online ISBN: 978-1-61779-551-0

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics