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Characterization of O-Linked Saccharides on Glycoproteins

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Pichia Protocols

Part of the book series: Methods in Molecular Biology ((MIMB,volume 389))

Abstract

Recombinant and native proteins of Pichia pastoris can be O-mannosylated on serine and threonine residues, allowing further elongation reactions to generate short O-linked oligosaccharides of mannose. Methods for release from the protein with alkaline β-elimination with or without reduction of the released saccharides, and for subsequent chromatographic and enzymatic characterization of these saccharides are described.

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References

  1. Lin Cereghino, J. and Cregg, J. M. (2000) Heterologous protein expression in the methylotrophic yeast Pichia pastoris. FEMS Microbiol. Rev. 24, 45–46.

    Article  Google Scholar 

  2. Gemmill, T. R. and Trimble, R. B. (1999) Overview of N-and O-linked oligosaccharide structures found in various yeast species. Biochim. Biophys. Acta 1426, 227–237.

    CAS  PubMed  Google Scholar 

  3. Wildt, S. and Gerngross, T. U. (2005) The humanization of N-glycosylation pathways in yeast. Nat. Rev. Microbiol. 3, 119–128.

    Article  CAS  PubMed  Google Scholar 

  4. Gentzsch, M. and Tanner, W. (1996) The PMT gene family: protein O-glycosylation in Saccharomyces cerevisiae is vital. EMBO J. 15, 5752–5759.

    CAS  PubMed  Google Scholar 

  5. Gentzsch, M. and Tanner, W. (1997) Protein-O-glycosylation in yeast: proteinspecific mannosyltransferases. Glycobiology 7, 481–486.

    Article  CAS  PubMed  Google Scholar 

  6. Girrbach, V. and Strahl, S. (2003) Members of the evolutionarily conserved PMT family of protein O-mannosyltransferases form distinct protein complexes among themselves. J. Biol. Chem. 278, 12,554–12,562.

    Article  CAS  PubMed  Google Scholar 

  7. Ecker, M., Mrsa, V., Hagen, I., Deutzmann, R., Strahl, S., and Tanner, W. (2003) O-Mannosylation precedes and potentially controls the N-glycosylation of a yeast cell wall glycoprotein. EMBO Rep. 4, 628–632.

    Article  CAS  PubMed  Google Scholar 

  8. Strahl-Bolsinger, S., Gentzsch, M., and Tanner, W. (1999) Protein O-mannosylation. Biochim. Biophys. Acta 1426, 297–307.

    CAS  PubMed  Google Scholar 

  9. Jigami, Y. and Odani, T. (1999) Mannosylphosphate transfer to yeast mannan. Biochim. Biophys. Acta 1426, 335–345.

    CAS  PubMed  Google Scholar 

  10. Duman, J. G., Miele, R. G., Liang, H., et al. (1998) O-Mannosylation of Pichia pastoris cellular and recombinant proteins. Biotechnol. Appl. Biochem. 28, 39–45.

    CAS  PubMed  Google Scholar 

  11. Van den Steen, P., Rudd, P. M., Proost, P., et al. (1998) Oligosaccharides of recombinant mouse gelatinase B variants. Biochim. Biophys. Acta 1425, 587–598.

    PubMed  Google Scholar 

  12. Bewley, M. C., Tam, B. M., Grewal, J., et al. (1999) X-ray crystallography and mass spectroscopy reveal that the N-lobe of human transferrin expressed in Pichia pastoris is folded correctly but is glycosylated on serine-32. Biochemistry 38, 2535–2541.

    Article  CAS  PubMed  Google Scholar 

  13. Mochizuki, S., Hamato, N., Hirose, M., et al. (2001) Expression and characterization of recombinant human antithrombin III in Pichia pastoris. Protein Express. Purif. 23, 55–65.

    Article  CAS  Google Scholar 

  14. Letourneur, O., Gervasi, G., Gaia, S., Pages, J., Watelet, B., and Jolivet, M. (2001) Characterization of Toxoplasma gondii surface antigen I (SAGI) secreted from Pichia pastoris: evidence of hyper O-glycosylation. Biotechnol. Appl. Biochem. 33, 35–45.

    Article  CAS  PubMed  Google Scholar 

  15. Boraston, A. B., Sandercock, L. E., Warren, R. A. J., and Kilburn, D. G. (2003) O-Glycosylation of a recombinant carbohydrate-binding module mutant secreted by Pichia pastoris. J. Mol. Microbiol. Biotechnol. 5, 29–36.

    Article  CAS  PubMed  Google Scholar 

  16. Trimble, R. B., Lubowski, C., Hauer III, C. R., et al. (2004) Characterization of N-and O-linked glycosylation of recombinant bile salt-stimulated lipase secreted by Pichia pastoris. Glycobiology 14, 265–274.

    Article  CAS  PubMed  Google Scholar 

  17. O’Leary, J. M., Radcliffe, C. M., Willis, A. C., Dwek, R. A., Rudd, P. M., and Downing, A. K. (2004) Identification and removal of O-linked and noncovalently linked sugars from recombinant protein produced using Pichia pastoris. Protein Express. Purif. 38, 217–227.

    Article  Google Scholar 

  18. Lennarz, W. J. and Hart, G. W. (eds.) (1994) Guide to Techniques in Glycobiology. Methods in Enzymology, vol. 230. Academic Press, San Diego, CA.

    Google Scholar 

  19. Palczewska, M., Batta, G., and Groves, P. (2003) Concanavalin A-Agarose removes mannan impurities from an extracellularly expressed Pichia pastoris recombinant protein. Cell. Mol. Biol. Lett. 8, 783–792.

    CAS  PubMed  Google Scholar 

  20. Nakajima, T. and Ballou, C. E. (1974) Characterization of the carbohydrate fragments obtained from Saccharomyces cerevisiae mannan by alkaline degradation. J. Biol. Chem. 249, 7679–7684.

    CAS  PubMed  Google Scholar 

  21. Ballou, C. E. (1990) Isolation, characterization, and properties of Saccharomyces cerevisiae mnn mutants with nonconditional protein glycosylation defects. Methods Enzymol. 185, 440–470.

    Article  CAS  PubMed  Google Scholar 

  22. Verostek, M. F., Lubowski, C., and Trimble, R. B. (2000) Selective organic precipitation/extraction of released N-glycans following large-scale enzymatic deglycoslyation of glycoproteins. Anal. Biochem. 278, 111–122.

    Article  CAS  PubMed  Google Scholar 

  23. Yamashita, K., Mizuochi, T., and Kobata, A. (1982) Analysis of oligosaccharides by gel filtration. Methods Enzymol. 83, 105–126.

    Article  CAS  PubMed  Google Scholar 

  24. Dubois, M., Gilles, K. A., Hamilton, J. K., Rebers, P. A., and Smith, F. (1956) Colorimetric method for determination of sugars and related substances. Anal. Chem. 28, 350–356.

    Article  CAS  Google Scholar 

  25. Miele, R. G., Castellino, F. J., and Bretthauer, R. K. (1997) Characterization of the acidic oligosaccharides assembled on the Pichia pastoris-expressed recombinant kringle 2 domain of human tissue-type plasminogen activator. Biotechnol. Appl. Biochem. 26, 79–83.

    CAS  PubMed  Google Scholar 

  26. Hirose, M., Kameyama, S., and Ohi, H. (2002) Characterization of N-linked oligosaccharides attached to recombinant human antithrombin expressed in the yeast Pichia pastoris. Yeast 19, 1191–1202.

    Article  Google Scholar 

  27. Townsend, R. R. and Hardy, M. R. (1991) Analysis of glycoprotein oligosaccharides using high-pH anion exchange chromatography. Glycobiology 1, 139–147.

    Article  CAS  PubMed  Google Scholar 

  28. Duus, J. O., Gotfredsen, C. H., and Bock, K. (2000) Carbohydrate structural determination by NMR spectroscopy: modern methods and limitations. Chem. Rev. 100, 4589–4614.

    Article  CAS  PubMed  Google Scholar 

  29. Dell, A. and Morris, H. R. (2001) Review: Glycoprotein structure determination by mass spectrometry. Science 291, 2351–2356.

    Article  CAS  PubMed  Google Scholar 

  30. Trimble, R. B., Atkinson, P. H., Tschopp, J. F., Townsend, R. R., and Maley, F. (1991) Structure of oligosaccharides on Saccharomyces SUC2 invertase secreted by the methylotrophic yeast Pichia pastoris. J. Biol. Chem. 266, 22,807–22,817.

    CAS  PubMed  Google Scholar 

  31. Patel, T., Bruce, J., Merry, A., et al. (1993) Use of hyrdrazine to release in intact and unreduced form both N-and O-linked oligosaccharides from glycoproteins. Biochemistry 32, 679–693.

    Article  CAS  PubMed  Google Scholar 

  32. Edge, A. S. B. (2003) Review article. Deglycosylation of glycoproteins with trifluoromethanesulphonic acid: elucidation of molecular structure and function. Biochem J. 376, 339–350.

    Article  CAS  PubMed  Google Scholar 

  33. Ibatullin, F. M., Newstroev, K. N., Golubev, A. M., and Firsov, L. M. (1993) Cleavage of O-glycosyl linkages in glycopeptides. Biokhimiya 58, 852–856 (English translation).

    CAS  Google Scholar 

  34. Ibatullin, F. M., Golubev, A. M., Firsov, L. M., and Neustroev, K. N. (1993) A model for cleavage of O-glycosidic bonds in glycoproteins. Glycoconjugate J. 10, 214–218.

    Article  CAS  Google Scholar 

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© 2007 Humana Press Inc., Totowa, NJ

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Bretthauer, R.K. (2007). Characterization of O-Linked Saccharides on Glycoproteins. In: Cregg, J.M. (eds) Pichia Protocols. Methods in Molecular Biology, vol 389. Humana Press. https://doi.org/10.1007/978-1-59745-456-8_8

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  • DOI: https://doi.org/10.1007/978-1-59745-456-8_8

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-429-6

  • Online ISBN: 978-1-59745-456-8

  • eBook Packages: Springer Protocols

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