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Isolation of JFH-1 Strain and Development of an HCV Infection System

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Hepatitis C

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 510))

Abstract

Detailed analysis of hepatitis C virus (HCV) has been hampered by the lack of an appropriate viral culture system and small animal models of infection. My group and others have recently reported the production of infectious virus after full-length HCV RNA transfection into Huh-7 cells. This system depends primarily on isolation of a JFH-1 strain from a patient with fulminant hepatitis. The JFH-1 strain belongs to genotype 2a and has high colony-formation efficiency when tested with a subgenomic replicon system. Here, I describe various protocols for isolation of the JFH-1 strain and construction of the HCV infection system. The HCV infection system contributes to our understanding of HCV virology and may permit development of novel antiviral strategies.

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References

  1. Bartenschlager, R. and Lohmann, V. (2001) Novel cell culture systems for the hepatitis C virus. Antiviral Res. 52, 1–17.

    Article  CAS  PubMed  Google Scholar 

  2. Lohmann, V., Korner, F., Koch, J., Herian, U., Theilmann, L., and Bartenschlager, R. (1999) Replication of subgenomic hepatitis C virus RNAs in a hepatoma cell line. Science 285, 110–113.

    Article  CAS  PubMed  Google Scholar 

  3. Blight, K. J., Kolykhalov, A. A., and Rice, C. M. (2000) Efficient initiation of HCV RNA replication in cell culture. Science 290, 1972–1974.

    Article  CAS  PubMed  Google Scholar 

  4. Lohmann, V., Korner, F., Dobierzewska, A., and Bartenschlager, R. (2001) Mutations in hepatitis C virus RNAs conferring cell culture adaptation. J. Virol. 75, 1437–1449.

    Article  CAS  PubMed  Google Scholar 

  5. Krieger, N., Lohmann, V., and Bartenschlager, R. (2001) Enhancement of hepatitis C virus RNA replication by cell culture-adaptive mutations. J. Virol. 75, 4614–4624.

    Article  CAS  PubMed  Google Scholar 

  6. Ikeda, M., Yi, M., Li, K., and Lemon, S. M. (2002) Selectable subgenomic and genome-length dicistronic RNAs derived from an infectious molecular clone of the HCV-N strain of hepatitis C virus replicate efficiently in cultured Huh7 cells. J. Virol. 76, 2997–3006.

    Article  CAS  PubMed  Google Scholar 

  7. Pietschmann, T., Lohmann, V., Kaul, A., Krieger, N., Rinck, G., Rutter, G., et al. (2002) Persistent and transient replication of full-length hepatitis C virus genomes in cell culture. J. Virol. 76, 4008–4021.

    Article  CAS  PubMed  Google Scholar 

  8. Blight, K. J., McKeating, J. A., Marcotrigiano, J., and Rice, C. M. (2003) Efficient replication of hepatitis C virus genotype 1a RNAs in cell culture. J. Virol. 77, 3181–3190.

    Article  CAS  PubMed  Google Scholar 

  9. Bukh, J., Pietschmann, T., Lohmann, V., Krieger, N., Faulk, K., Engle, R. E., et al. (2002) Mutations that permit efficient replication of hepatitis C virus RNA in Huh-7 cells prevent productive replication in chimpanzees. Proc. Natl. Acad. Sci. USA 99, 14416–14421.

    Article  CAS  PubMed  Google Scholar 

  10. Kato, T., Furusaka, A., Miyamoto, M., Date, T., Yasui, K., Hiramoto, J., et al. (2001) Analysis of hepatitis C virus isolated from a fulminant hepatitis patient. J. Med. Virol. 64, 334–339.

    Article  CAS  PubMed  Google Scholar 

  11. Kato, T., Date, T., Miyamoto, M., Furusaka, A., Tokushige, K., Mizokami, M., et al. (2003) Efficient replication of the genotype 2a hepatitis C virus subgenomic replicon. Gastroenterology 125, 1808–1817.

    Article  CAS  PubMed  Google Scholar 

  12. Uprichard, S. L., Chung, J., Chisari, F. V., and Wakita, T. (2006) Replication of a hepatitis C virus replicon clone in mouse cells. Virol. J. 3, 89.

    Article  PubMed  Google Scholar 

  13. Date, T., Miyamoto, M., Kato, T., Morikawa, K., Murayama, A., Akazawa, D., et al. (2007) An infectious and selectable full-length replicon system with hepatitis C virus JFH-1 strain. Hepatol. Res. in press.

    Google Scholar 

  14. Kato, T., Date, T., Miyamoto, M., Sugiyama, M., Tanaka, Y., Orito, E., et al. Detection of anti-hepatitis C virus effects of interferon and ribavirin by a sensitive replicon system. J. Clin. Microbiol. 43, 5679–5684.

    Google Scholar 

  15. Date, T., Kato, T., Miyamoto, M., Zhao, Z., Yasui, K., Mizokami, M., et al. (2004) Genotype 2a hepatitis C virus subgenomic replicon can replicate in HepG2 and IMY-N9 cells. J. Biol. Chem. 279, 22371–22376.

    Article  CAS  PubMed  Google Scholar 

  16. Kato, T., Date, T., Miyamoto, M., Zhao, Z., Mizokami, M., and Wakita, T. (2005) Non-hepatic cell lines HeLa and 293 cells support efficient replication of hepatitis C virus genotype 2a subgenomic replicon. J. Virol. 79, 592–596.

    Article  CAS  PubMed  Google Scholar 

  17. Wakita, T., Pietschmann, T., Kato, T., Date, T., Miyamoto, M., Zhao, Z., et al. (2005) Production of infectious hepatitis C virus in tissue culture from a cloned viral genome. Nat. Med. 11, 791–796.

    Article  CAS  PubMed  Google Scholar 

  18. Zhong, J., Gastaminza, P., Cheng, G., Kapadia, S., Kato, T., Burton, D. R., et al. (2005) Robust hepatitis C virus infection in vitro. Proc. Natl. Acad. Sci. USA 102, 9294–9299.

    Article  CAS  PubMed  Google Scholar 

  19. Blight, K. J., McKeating, J. A., and Rice, C. M. (2002) Highly permissive cell lines for subgenomic and genomic hepatitis C virus RNA replication. J. Virol. 76, 13001–13014.

    Article  CAS  PubMed  Google Scholar 

  20. Sumpter, R., Jr., Loo, Y. M., Foy, E., Li, K., Yoneyama, M., Fujita, T., et al. (2005) Regulating intracellular antiviral defense and permissiveness to hepatitis C virus RNAreplication through a cellular RNA helicase, RIG-I. J. Virol. 79, 2689–2699.

    Article  CAS  PubMed  Google Scholar 

  21. Lindenbach, B. D., Evans, M. J., Syder, A. J., Wolk, B., Tellinghuisen, T. L., Liu, C. C.,et al. (2005) Complete replication of hepatitis C virus in cell culture. Science 309, 623–626.

    Article  CAS  PubMed  Google Scholar 

  22. Koutsoudakis, G., Herrmann, E., Kallis, S., Bartenschlager, R., and Pietschmann, T. (2007) The level of CD81 cell surface expression is a key determinant for productive entry of hepatitis C virus into host cells. J. Virol. 81, 588–598.

    Article  CAS  PubMed  Google Scholar 

  23. Akazawa, D., Date, T., Morikawa, K., Murayama, A., Miyamoto, M., Kaga, M., et al. (2007) CD81 expression is important for heterogeneous HCV permissiveness of Huh7 cell clones. J. Virol. [Epub ahead of print].

    Google Scholar 

  24. Nakabayashi, H., Taketa, K., Miyano, K., Yamane, T., and Sato, J. (1982) Growth of human hepatoma cells lines with differentiated functions in chemically defined medium. Cancer Res. 42, 3858–3863.

    CAS  PubMed  Google Scholar 

  25. Koutsoudakis, G., Kaul, A., Steinmann, E., Kallis, S., Lohmann, V., Pietschmann, T., et al. (2006) Characterization of the early steps of hepatitis C virus infection by using luciferase reporter viruses. J. Virol. 80, 5308–5320.

    Article  CAS  PubMed  Google Scholar 

  26. Morikawa, K., Zhao, Z., Date, T., Miyamoto, M., Murayama, A., Akazawa, D., et al. (2007) The roles of CD81 and glycosaminoglycans in the adsorption and uptake of infectious HCV particles. J. Med. Virol. in press.

    Google Scholar 

  27. Kapadia, S. B., Barth, H., Baumert, T.,McKeating, J. A., and Chisari, F. V. (2007) Initiation of hepatitis C virus infection is dependent on cholesterol and cooperativity between CD81 and scavenger receptor B type I. J. Virol. 81, 374–383.

    Article  CAS  PubMed  Google Scholar 

  28. Grove, J., Huby, T., Stamataki, Z., Vanwolleghem, T., Meuleman, P., Farquhar, M., et al. (2007) Scavenger receptor BI and BII expression levels modulate Hepatitis C virus infectivity. J Virol. [Epub ahead of print].

    Google Scholar 

  29. Blanchard, E., Belouzard, S., Goueslain, L., Wakita, T., Dubuisson, J., Wychowski, C.,et al. (2006) Hepatitis C virus entry depends on clathrin-mediated endocytosis. J Virol. 80, 6964–6972.

    Article  CAS  PubMed  Google Scholar 

  30. Evans, M. J., von Hahn, T., Tscherne, D. M., Syder, A. J., Panis, M., Wolk, B., (2007) Claudin-1 is a hepatitis C virus co-receptor required for a late step in entry. Nature [Epub ahead of print].

    Google Scholar 

  31. Kanda, T., Basu, A., Steele, R., Wakita, T., Ryerse, JS., Ray, R., et al. (2006) Generation of infectious hepatitis C virus in immortalized human hepatocytes. J. Virol. 80, 4633–4639.

    Article  CAS  PubMed  Google Scholar 

  32. Wagoner, J., Austin, M., Green, J., Imaizumi, T., Casola, A., Brasier, A., et al. Regulation of CXCL-8 (interleukin 8) induction by dsRNA signaling pathways during hepatitis C virus infection. J. Virol. 81, 309–318.

    Google Scholar 

  33. Larrea, E., Riezu-Boj, J. I., Gil-Guerrero, L., Casares, N., Aldabe, R., Sarobe, P., et al. (2007) Upregulation of indoleamine 2,3 dioxygenase in hepatitis C virus infection. J. Virol. [Epub ahead of print].

    Google Scholar 

  34. Francesco, R. D., and Migliaccio, G. (2005) Challenges and successes in developing new therapies for hepatitis C. Nature 436, 953–960.

    Article  PubMed  Google Scholar 

  35. Cai, Z., Zhang, C., Chang, K-Y., Jiang, J., Ahn, B-C., Wakita, T., et al. (2005) Robust production of infectious hepatitis C virus (HCV) from stably HCV cDNA-transfected human hepatoma cells. J. Virol. 79, 13963–13973.

    Article  CAS  PubMed  Google Scholar 

  36. Kato, T., Matsumura, T., Heller, T., Saito, S., Sapp, R. K., Murthy, K., et al. (2007) Production of infectious hepatitis C virus of various genotypes in cell culture. J. Virol. [Epub ahead of print].

    Google Scholar 

  37. Rouillé, Y., Helle, F., Delgrange, D., Roingeard, P., Voisset, C., Blanchard, E., et al. (2006) Subcellular localization of hepatitis C virus structural proteins in a cell culture system that efficiently replicates the virus. J. Virol. 80, 2832–2841.

    Article  PubMed  Google Scholar 

  38. Shirakura, M., Murakami, K., Ichimura, T., Suzuki, R., Shimoji, T., Fukuda, K., et al. (2007) The E6AP ubiquitin ligase mediates ubiquitylation and degradation of hepatitis C virus core protein. J. Virol. 81, 1174–1185.

    Article  CAS  PubMed  Google Scholar 

  39. Houghton, M. and Abrignani, S. (2005) Prospects for a vaccine against the hepatitis C virus. Nature 436, 961–966.

    Article  CAS  PubMed  Google Scholar 

  40. Meunier, J. C., Engle, R. E., Faulk, K., Zhao, M., Bartosch, B., Alter, H., et al. (2005) Evidence for cross-genotype neutralization of hepatitis C virus pseudo-particles and enhancement of infectivity by apolipoprotein C1. Proc. Natl. Acad. Sci. USA 102, 4560–4565.

    Article  CAS  PubMed  Google Scholar 

  41. Yi, M., Villanueva, R. A., Thomas, D. L., Wakita, T., and Lemon, S. M. (2006) Production of infectious genotype 1a hepatitis C virus (Hutchinson strain) in cultured human hepatoma cells. Proc. Natl. Acad. Sci. USA 103, 2310–2315.

    Article  CAS  PubMed  Google Scholar 

  42. van den Hoff, M. J., Moorman, A. F., and Lamers, W. H. (1992) Electroporation in “intracellular” buffer increases cell survival. Nucleic Acids Res. 20, 2902.

    Article  PubMed  Google Scholar 

  43. Kato, T., Date, T., Murayama, A., Morikawa, K., Akazawa, D., and Wakita, T. (2006) Cell culture and infection system for hepatitis C virus. Nature Protocols 1, 2334–2339.

    Article  CAS  PubMed  Google Scholar 

  44. Reed, L. J. and Muench, H. A. (1938) Simple method of estimating fifty per cent endpoints. Am. J. Hyg. 27493–27497.

    Google Scholar 

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Acknowledgements

This work was partially supported by a grant-in-aid for Scientific Research from the Japan Society for the Promotion of Science, from the Ministry of Health, Labour and Welfare of Japan, and from the Ministry of Education, Culture, Sports, Science and Technology and by the Research on Health Sciences Focusing on Drug Innovation from the Japan Health Sciences Foundation.

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© 2009 Humana Press, a part of Springer Science+Business Media, LLC

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Wakita, T. (2009). Isolation of JFH-1 Strain and Development of an HCV Infection System. In: Tang, H. (eds) Hepatitis C. Methods in Molecular Biology™, vol 510. Humana Press. https://doi.org/10.1007/978-1-59745-394-3_23

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  • DOI: https://doi.org/10.1007/978-1-59745-394-3_23

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-970-3

  • Online ISBN: 978-1-59745-394-3

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