Abstract
How voltage-gated calcium channels (VGCCs) mediate signal transductions in response to changes in membrane potential is primarily studied in in vitro and ex vivo systems via biochemical and electrophysiological methods. With the emergence of single-molecule (SM) fluorescence microscopy techniques, it is now possible to characterize the molecular organization and the biophysical dynamics of ion channels in cells with precisions on the order of a few nanometers. However, performing such SM measurements within excitable tissues in intact animals is challenging. Here we describe protocols for an in vivo and tissue-specific SM imaging technique called complementation-activated light microscopy (CALM). By combining native expression of CRISPR-engineered split-fluorescent protein (split-FP) fusions and controlled fluorescence activation of split-FPs in vivo, CALM enables researchers to study the dynamics of individual calcium channels with a precision better than 30 nm directly within neuromuscular synapses of adult Caenorhabditis elegans (C. elegans) nematodes or at the sarcolemma of their body-wall muscle cells. With the availability of various split-FP spectral variants and of tissue-specific fluorescent markers, CALM can be extended to multicolor and nanoscale dynamic studies of virtually any membrane proteins and channels expressed at physiological levels in live animals.
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References
Liu Z, Lavis LD, Betzig E (2015) Imaging live-cell dynamics and structure at the single-molecule level. Mol Cell 58(4):644–659. https://doi.org/10.1016/j.molcel.2015.02.033
Lord SJ, Lee HL, Moerner WE (2010) Single-molecule spectroscopy and imaging of biomolecules in living cells. Anal Chem 82(6):2192–2203. https://doi.org/10.1021/ac9024889
Shashkova S, Leake MC (2017) Single-molecule fluorescence microscopy review: shedding new light on old problems. Biosci Rep 37(4):BSR20170031. https://doi.org/10.1042/bsr20170031
Triller A, Choquet D (2008) New concepts in synaptic biology derived from single-molecule imaging. Neuron 59(3):359–374. https://doi.org/10.1016/j.neuron.2008.06.022
Willig KI, Barrantes FJ (2014) Recent applications of superresolution microscopy in neurobiology. Curr Opin Chem Biol 20:16–21. https://doi.org/10.1016/j.cbpa.2014.03.021
Zhan H, Stanciauskas R, Stigloher C, Dizon KK, Jospin M, Bessereau JL, Pinaud F (2014) In vivo single-molecule imaging identifies altered dynamics of calcium channels in dystrophin-mutant C. elegans. Nat Commun 5:4974. https://doi.org/10.1038/ncomms5974
Doudna JA, Charpentier E (2014) Genome editing. The new frontier of genome engineering with CRISPR-Cas9. Science 346(6213):1258096. https://doi.org/10.1126/science.1258096
Khan AO, Simms VA, Pike JA, Thomas SG, Morgan NV (2017) CRISPR-Cas9 mediated labelling allows for single molecule imaging and resolution. Sci Rep 7(1):8450. https://doi.org/10.1038/s41598-017-08493-x
Axelrod D (1981) Cell-substrate contacts illuminated by total internal reflection fluorescence. J Cell Biol 89(1):141–145
Reck-Peterson SL, Derr ND, Stuurman N (2010) Imaging single molecules using total internal reflection fluorescence microscopy (TIRFM). Cold Spring Harb Protoc 2010(3):pdb.top73. https://doi.org/10.1101/pdb.top73
Pinaud F, Dahan M (2011) Targeting and imaging single biomolecules in living cells by complementation-activated light microscopy with split-fluorescent proteins. Proc Natl Acad Sci U S A 108(24):E201–E210. https://doi.org/10.1073/pnas.1101929108
Cabantous S, Terwilliger TC, Waldo GS (2005) Protein tagging and detection with engineered self-assembling fragments of green fluorescent protein. Nat Biotechnol 23(1):102–107. https://doi.org/10.1038/nbt1044
Koker T, Fernandez A, Pinaud F (2018) Characterization of split fluorescent protein variants and quantitative analyses of their self-assembly process. Sci Rep 8(1):5344. https://doi.org/10.1038/s41598-018-23625-7
Catterall WA (2011) Voltage-gated calcium channels. Cold Spring Harb Perspect Biol 3(8):a003947. https://doi.org/10.1101/cshperspect.a003947
Nanou E, Catterall WA (2018) Calcium channels, synaptic plasticity, and neuropsychiatric disease. Neuron 98(3):466–481. https://doi.org/10.1016/j.neuron.2018.03.017
Mercer AJ, Chen M, Thoreson WB (2011) Lateral mobility of presynaptic L-type calcium channels at photoreceptor ribbon synapses. J Neurosci 31(12):4397–4406. https://doi.org/10.1523/jneurosci.5921-10.2011
Schneider R, Hosy E, Kohl J, Klueva J, Choquet D, Thomas U, Voigt A, Heine M (2015) Mobility of calcium channels in the presynaptic membrane. Neuron 86(3):672–679. https://doi.org/10.1016/j.neuron.2015.03.050
Dixon RE, Moreno CM, Yuan C, Opitz-Araya X, Binder MD, Navedo MF, Santana LF (2015) Graded Ca(2)(+)/calmodulin-dependent coupling of voltage-gated CaV1.2 channels. Elife 4. https://doi.org/10.7554/eLife.05608
Heine M, Ciuraszkiewicz A, Voigt A, Heck J, Bikbaev A (2016) Surface dynamics of voltage-gated ion channels. Channels (Austin) 10(4):267–281. https://doi.org/10.1080/19336950.2016.1153210
Bargmann C (1998) Neurobiology of the Caenorhabditis elegans Genome. Science 282(5396):2028–2033
Mathews EA, Garcia E, Santi CM, Mullen GP, Thacker C, Moerman DG, Snutch TP (2003) Critical residues of the Caenorhabditis elegans unc-2 voltage-gated calcium channel that affect behavioral and physiological properties. J Neurosci 23(16):6537–6545
Arellano-Carbajal F, Briseno-Roa L, Couto A, Cheung BH, Labouesse M, de Bono M (2011) Macoilin, a conserved nervous system-specific ER membrane protein that regulates neuronal excitability. PLoS Genet 7(3):e1001341. https://doi.org/10.1371/journal.pgen.1001341
Gao S, Zhen M (2011) Action potentials drive body wall muscle contractions in Caenorhabditis elegans. Proc Natl Acad Sci U S A 108(6):2557–2562. https://doi.org/10.1073/pnas.1012346108
Schafer WR, Kenyon CJ (1995) A calcium-channel homologue required for adaptation to dopamine and serotonin in Caenorhabditis elegans. Nature 375(6526):73–78. https://doi.org/10.1038/375073a0
Schafer WR, Sanchez BM, Kenyon CJ (1996) Genes affecting sensitivity to serotonin in Caenorhabditis elegans. Genetics 143(3):1219–1230
Saheki Y, Bargmann C (2009) Presynaptic CaV2 calcium channel traffic requires CALF-1 and the α2δ subunit UNC-36. Nature Neuroscience 12, 1257–1265
Klassen MP, Shen K (2007) Wnt signaling positions neuromuscular connectivity by inhibiting synapse formation in C. elegans. Cell 130(4):704–716. https://doi.org/10.1016/j.cell.2007.06.046
Frokjaer-Jensen C, Kindt KS, Kerr RA, Suzuki H, Melnik-Martinez K, Gerstbreih B, Driscol M, Schafer WR (2006) Effects of voltage-gated calcium channel subunit genes on calcium influx in cultured C. elegans mechanosensory neurons. J Neurobiol 66(10):1125–1139. https://doi.org/10.1002/neu.20261
Laine V, Frokjaer-Jensen C, Couchoux H, Jospin M (2011) The alpha1 subunit EGL-19, the alpha2/delta subunit UNC-36, and the beta subunit CCB-1 underlie voltage-dependent calcium currents in Caenorhabditis elegans striated muscle. J Biol Chem 286(42):36180–36187. https://doi.org/10.1074/jbc.M111.256149
Gottschalk A, Schafer WR (2006) Visualization of integral and peripheral cell surface proteins in live Caenorhabditis elegans. J Neurosci Methods 154(1–2):68–79. https://doi.org/10.1016/j.jneumeth.2005.11.016
Dickinson DJ, Ward JD, Reiner DJ, Goldstein B (2013) Engineering the Caenorhabditis elegans genome using Cas9-triggered homologous recombination. Nat Methods 10(10):1028–1034. https://doi.org/10.1038/nmeth.2641
Waaijers S, Boxem M (2014) Engineering the Caenorhabditis elegans genome with CRISPR/Cas9. Methods 68(3):381–388. https://doi.org/10.1016/j.ymeth.2014.03.024
Paix A, Folkmann A, Seydoux G (2017) Precision genome editing using CRISPR-Cas9 and linear repair templates in C. elegans. Methods 121-122:86–93. https://doi.org/10.1016/j.ymeth.2017.03.023
Deltcheva E, Chylinski K, Sharma CM, Gonzales K, Chao Y, Pirzada ZA, Eckert MR, Vogel J, Charpentier E (2011) CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature 471(7340):602–607. https://doi.org/10.1038/nature09886
Chiu IM, Morimoto ET, Goodarzi H, Liao JT, O’Keeffe S, Phatnani HP, Muratet M, Carroll MC, Levy S, Tavazoie S, Myers RM, Maniatis T (2013) A neurodegeneration-specific gene-expression signature of acutely isolated microglia from an amyotrophic lateral sclerosis mouse model. Cell Rep 4(2):385–401. https://doi.org/10.1016/j.celrep.2013.06.018
Cho SW, Kim S, Kim JM, Kim JS (2013) Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease. Nat Biotechnol 31(3):230–232. https://doi.org/10.1038/nbt.2507
Lo TW, Pickle CS, Lin S, Ralston EJ, Gurling M, Schartner CM, Bian Q, Doudna JA, Meyer BJ (2013) Precise and heritable genome editing in evolutionarily diverse nematodes using TALENs and CRISPR/Cas9 to engineer insertions and deletions. Genetics 195(2):331–348. https://doi.org/10.1534/genetics.113.155382
Chen B, Gilbert LA, Cimini BA, Schnitzbauer J, Zhang W, Li GW, Park J, Blackburn EH, Weissman JS, Qi LS, Huang B (2013) Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system. Cell 155(7):1479–1491. https://doi.org/10.1016/j.cell.2013.12.001
Tzur YB, Friedland AE, Nadarajan S, Church GM, Calarco JA, Colaiacovo MP (2013) Heritable custom genomic modifications in Caenorhabditis elegans via a CRISPR-Cas9 system. Genetics 195(3):1181–1185. https://doi.org/10.1534/genetics.113.156075
Kim S, Kim D, Cho SW, Kim J, Kim JS (2014) Highly efficient RNA-guided genome editing in human cells via delivery of purified Cas9 ribonucleoproteins. Genome Res 24(6):1012–1019. https://doi.org/10.1101/gr.171322.113
Paix A, Wang Y, Smith HE, Lee CY, Calidas D, Lu T, Smith J, Schmidt H, Krause MW, Seydoux G (2014) Scalable and versatile genome editing using linear DNAs with microhomology to Cas9 sites in Caenorhabditis elegans. Genetics 198(4):1347–1356. https://doi.org/10.1534/genetics.114.170423
Arribere JA, Bell RT, Fu BX, Artiles KL, Hartman PS, Fire AZ (2014) Efficient marker-free recovery of custom genetic modifications with CRISPR/Cas9 in Caenorhabditis elegans. Genetics 198(3):837–846. https://doi.org/10.1534/genetics.114.169730
Evans TC (2006) Transformation and microinjection. In: Community TCeR (ed) WormBook. https://doi.org/10.1895/wormbook.1.108.1
Pawley JB (2006) Points, pixels, and gray levels: digitizing image data. In: Pawley JB (ed) Handbook of biological confocal microscopy. Springer US, Boston, MA, pp 59–79. https://doi.org/10.1007/978-0-387-45524-2_4
Nyquist H (1928) Certain topics in telegraph transmission theory. Trans Am Inst Electr Eng 47(2):617–644. https://doi.org/10.1109/t-aiee.1928.5055024
Chenouard N, Smal I, de Chaumont F, Maska M, Sbalzarini IF, Gong Y, Cardinale J, Carthel C, Coraluppi S, Winter M, Cohen AR, Godinez WJ, Rohr K, Kalaidzidis Y, Liang L, Duncan J, Shen H, Xu Y, Magnusson KE, Jalden J, Blau HM, Paul-Gilloteaux P, Roudot P, Kervrann C, Waharte F, Tinevez JY, Shorte SL, Willemse J, Celler K, van Wezel GP, Dan HW, Tsai YS, Ortiz de Solorzano C, Olivo-Marin JC, Meijering E (2014) Objective comparison of particle tracking methods. Nat Methods 11(3):281–289. https://doi.org/10.1038/nmeth.2808
Serge A, Bertaux N, Rigneault H, Marguet D (2008) Dynamic multiple-target tracing to probe spatiotemporal cartography of cell membranes. Nat Methods 5(8):687–694. https://doi.org/10.1038/nmeth.1233
Thompson RE, Larson DR, Webb WW (2002) Precise nanometer localization analysis for individual fluorescent probes. Biophys J 82(5):2775–2783. https://doi.org/10.1016/s0006-3495(02)75618-x
Schutz GJ, Schindler H, Schmidt T (1997) Single-molecule microscopy on model membranes reveals anomalous diffusion. Biophys J 73(2):1073–1080. https://doi.org/10.1016/s0006-3495(97)78139-6
Pinaud F, Michalet X, Iyer G, Margeat E, Moore HP, Weiss S (2009) Dynamic partitioning of a glycosyl-phosphatidylinositol-anchored protein in glycosphingolipid-rich microdomains imaged by single-quantum dot tracking. Traffic (Copenhagen, Denmark) 10(6):691–712. https://doi.org/10.1111/j.1600-0854.2009.00902.x
Chen BC, Legant WR, Wang K, Shao L, Milkie DE, Davidson MW, Janetopoulos C, Wu XS, Hammer JA 3rd, Liu Z, English BP, Mimori-Kiyosue Y, Romero DP, Ritter AT, Lippincott-Schwartz J, Fritz-Laylin L, Mullins RD, Mitchell DM, Bembenek JN, Reymann AC, Bohme R, Grill SW, Wang JT, Seydoux G, Tulu US, Kiehart DP, Betzig E (2014) Lattice light-sheet microscopy: imaging molecules to embryos at high spatiotemporal resolution. Science 346(6208):23
Power RM, Huisken J (2017) A guide to light-sheet fluorescence microscopy for multiscale imaging. Nat Methods 14(4):360–373. https://doi.org/10.1038/nmeth.4224
Izeddin I, El Beheiry M, Andilla J, Ciepielewski D, Darzacq X, Dahan M (2012) PSF shaping using adaptive optics for three-dimensional single-molecule super-resolution imaging and tracking. Opt Express 20(5):4957–4967. https://doi.org/10.1364/oe.20.004957
Burke D, Patton B, Huang F, Bewersdorf J, Booth MJ (2015) Adaptive optics correction of specimen-induced aberrations in single-molecule switching microscopy. Optica 2(2):177–185. https://doi.org/10.1364/optica.2.000177
Tehrani KF, Zhang Y, Shen P, Kner P (2017) Adaptive optics stochastic optical reconstruction microscopy (AO-STORM) by particle swarm optimization. Biomed Opt Express 8(11):5087–5097. https://doi.org/10.1364/boe.8.005087
Booth M, Andrade D, Burke D, Patton B, Zurauskas M (2015) Aberrations and adaptive optics in super-resolution microscopy. Microscopy 64(4):251–261. https://doi.org/10.1093/jmicro/dfv033
Acknowledgments
We would like to thank Dr. Jean-Louis Bessereau and members from his laboratory for kindly providing the transgenic strains with neuromuscular junction markers, Dr. Hong Zhan for sharing the pHZ043 plasmid and alternative genome editing strategies, and Dr. Thomas Duchaine and Vinay Mayya for many critical advices and reagents for CRISPR-based genome engineering.
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Zhao, Y., Pinaud, F. (2020). In Vivo Single-Molecule Tracking of Voltage-Gated Calcium Channels with Split-Fluorescent Proteins in CRISPR-Engineered C. elegans. In: Yamamoto, N., Okada, Y. (eds) Single Molecule Microscopy in Neurobiology . Neuromethods, vol 154. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0532-5_2
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