Genomics of infectious diseases special issue

In this topical collection (18 articles)

1. Research

   Global gene expression profiling identifies new therapeutic targets in acute Kawasaki disease

   Long Truong Hoang, Chisato Shimizu, Ling Ling, Ahmad Nazri Mohamed Naim… Article:541

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2. Review

   Virus-host interactomics: new insights and opportunities for antiviral drug discovery

   Benoît de Chassey, Laurène Meyniel-Schicklin, Jacky Vonderscher… Article:115

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3. Review

   Clinical detection and characterization of bacterial pathogens in the genomics era

   Pierre-Edouard Fournier, Gregory Dubourg, Didier Raoult Article:114

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4. Research

   Next generation sequencing analysis of nine Corynebacterium ulcerans isolates reveals zoonotic transmission and a novel putative diphtheria toxin-encoding pathogenicity island

   Dominik M Meinel, Gabriele Margos, Regina Konrad, Stefan Krebs… Article:113

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5. Method

   Systematic identification and quantification of phase variation in commensal and pathogenic Escherichia coli

   Amir Goldberg, Ofer Fridman, Irine Ronin, Nathalie Q Balaban Article:112

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6. Research

   An integrated transcriptome and expressed variant analysis of sepsis survival and death

   Ephraim L Tsalik, Raymond J Langley, Darrell L Dinwiddie, Neil A Miller… Article:111

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7. Research

   Plasmodium falciparumgene expression measured directly from tissue during human infection

   Daria Van Tyne, Yan Tan, Johanna P Daily, Steve Kamiza, Karl Seydel… Article:110

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8. Review

   Characterizing the genetic basis of bacterial phenotypes using genome-wide association studies: a new direction for bacteriology

   Timothy D Read, Ruth C Massey Article:109

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9. Comment

   Single cell genomics of bacterial pathogens: outlook for infectious disease research

   Jeffrey S McLean, Roger S Lasken Article:108

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10. Opinion

    Genomics and infectious disease: a call to identify the ethical, legal and social implications for public health and clinical practice

    Gail Geller, Rachel Dvoskin, Chloe L Thio, Priya Duggal… Article:106

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11. Research highlight

    Stopping outbreaks with real-time genomic epidemiology

    Patrick Tang, Jennifer L Gardy Article:104

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12. Editorial

    Microbial sequencing to improve individual and population health

    Sharon J Peacock, George M Weinstock Article:103

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13. Method

    A phylogeny-based sampling strategy and power calculator informs genome-wide associations study design for microbial pathogens

    Maha R Farhat, B Jesse Shapiro, Samuel K Sheppard, Caroline Colijn… Article:101

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14. Software

    Y_MAP: a pipeline for visualization of copy number variation and loss of heterozygosity in eukaryotic pathogens

    Darren A Abbey, Jason Funt, Mor N Lurie-Weinberger, Dawn A Thompson… Article:100

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15. Research

    The conjunctival microbiome in health and trachomatous disease: a case control study

    Yanjiao Zhou, Martin J Holland, Pateh Makalo, Hassan Joof… Article:99

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16. Research

    Staphylococcus aureusgene expression in a rat model of infective endocarditis

    Frank Hanses, Christelle Roux, Paul M Dunman, Bernd Salzberger… Article:93

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17. Software

    SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

    Michael Inouye, Harriet Dashnow, Lesley-Ann Raven, Mark B Schultz… Article:90

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18. Research

    Genomic epidemiology of a protracted hospital outbreak caused by multidrug-resistant Acinetobacter baumanniiin Birmingham, England

    Mihail R Halachev, Jacqueline Z-M Chan, Chrystala I Constantinidou… Article:70

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