Microbiomes and Metagenomics

In this topical collection (8 articles)

1. Software

   KrakenUniq: confident and fast metagenomics classification using unique k-mer counts

   F. P. Breitwieser, D. N. Baker, S. L. Salzberg Article:198

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2. Research

   Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

   Alexa B. R. McIntyre, Rachid Ounit, Ebrahim Afshinnekoo, Robert J. Prill… Article:182

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3. Research

   Quantitative metagenomics reveals unique gut microbiome biomarkers in ankylosing spondylitis

   Chengping Wen, Zhijun Zheng, Tiejuan Shao, Lin Liu, Zhijun Xie… Article:142

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4. Research

   Interaction between the microbiome and TP53 in human lung cancer

   K. Leigh Greathouse, James R. White, Ashely J. Vargas… Article:123

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5. Software

   Assessing taxonomic metagenome profilers with OPAL

   Fernando Meyer, Andreas Bremges, Peter Belmann, Stefan Janssen… Article:51

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6. Software

   bin3C: exploiting Hi-C sequencing data to accurately resolve metagenome-assembled genomes

   Matthew Z. DeMaere, Aaron E. Darling Article:46

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7. Research

   Population structure of human gut bacteria in a diverse cohort from rural Tanzania and Botswana

   Matthew E. B. Hansen, Meagan A. Rubel, Aubrey G. Bailey, Alessia Ranciaro… Article:16

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8. Research

   An obesity-associated gut microbiome reprograms the intestinal epigenome and leads to altered colonic gene expression

   Yufeng Qin, John D. Roberts, Sara A. Grimm, Fred B. Lih… Article:7

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