Daphnia: the companion papers for the genome sequence

In this topical collection (17 articles)

1. Research article

   Simple sequence repeat variation in the Daphnia pulex genome

   Way Sung, Abraham Tucker, R Daniel Bergeron, Michael Lynch, W Kelley Thomas Article:691

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2. Research article

   Target gene approaches: Gene expression in Daphnia magna exposed to predator-borne kairomones or to microcystin-producing and microcystin-free Microcystis aeruginosa

   Anke Schwarzenberger, Cornelius Courts, Eric von Elert Article:527

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3. Research article

   The first-generation Daphnia magna linkage map

   Jarkko Routtu, Bastiaan Jansen, Isabelle Colson, Luc De Meester… Article:508

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4. Research article

   Annotation, phylogenetics, and expression of the nuclear receptors in Daphnia pulex

   Susanne A Thomson, William S Baldwin, Ying H Wang, Gwijun Kwon… Article:500

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5. Research article

   Gene response profiles for Daphnia pulex exposed to the environmental stressor cadmium reveals novel crustacean metallothioneins

   Joseph R Shaw, John K Colbourne, Jennifer C Davey, Stephen P Glaholt… Article:477

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6. Research article

   Profiling sex-biased gene expression during parthenogenetic reproduction in Daphnia pulex

   Brian D Eads, John K Colbourne, Elizabeth Bohuski, Justen Andrews Article:464

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7. Research article

   LTR retroelements in the genome of Daphnia pulex

   Mina Rho, Sarah Schaack, Xiang Gao, Sun Kim, Michael Lynch, Haixu Tang Article:425

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8. Research article

   Genome-wide analysis of tandem repeats in Daphnia pulex - a comparative approach

   Christoph Mayer, Florian Leese, Ralph Tollrian Article:277

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9. Research article

   A survey of well conserved families of C2H2 zinc-finger genes in Daphnia

   Arun Seetharam, Yang Bai, Gary W Stuart Article:276

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10. Research article

    Sampling Daphnia's expressed genes: preservation, expansion and invention of crustacean genes with reference to insect genomes

    John K Colbourne, Brian D Eads, Joseph Shaw, Elizabeth Bohuski… Article:217

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11. Research article

    The components of the Daphnia pulex immune system as revealed by complete genome sequencing

    Seanna J McTaggart, Claire Conlon, John K Colbourne, Mark L Blaxter… Article:175

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12. Software

    ESTPiper – a web-based analysis pipeline for expressed sequence tags

    Zuojian Tang, Jeong-Hyeon Choi, Chris Hemmerich, Ankita Sarangi… Article:174

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13. Research article

    Reconstructing the phylogeny of 21 completely sequenced arthropod species based on their motor proteins

    Florian Odronitz, Sebastian Becker, Martin Kollmar Article:173

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14. Research article

    Comparative metagenomics of Daphnia symbionts

    Weihong Qi, Guang Nong, James F Preston, Frida Ben-Ami, Dieter Ebert Article:172

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15. Research article

    LC-MS/MS-based proteome profiling in Daphnia pulex and Daphnia longicephala: the Daphnia pulex genome database as a key for high throughput proteomics in Daphnia

    Thomas Fröhlich, Georg J Arnold, Rainer Fritsch, Tobias Mayr… Article:171

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16. Research article

    The ABC transporter gene family of Daphnia pulex

    Armin Sturm, Phil Cunningham, Michael Dean Article:170

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17. Research article

    The cytochrome P450 (CYP) gene superfamily in Daphnia pulex

    William S Baldwin, Peter B Marko, David R Nelson Article:169

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