Imaging, image analysis and data visualization

ISSN: 1471-2105 (Online)

In this topical collection (179 articles)

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  1. Research article

    DeepSV: accurate calling of genomic deletions from high-throughput sequencing data using deep convolutional neural network

    Lei Cai, Yufeng Wu, Jingyang Gao Article:665
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  2. Research article

    3-Dimensional facial expression recognition in human using multi-points warping

    Olalekan Agbolade, Azree Nazri, Razali Yaakob, Abdul Azim Ghani… Article:619
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  3. Methodology article

    CGINet: graph convolutional network-based model for identifying chemical-gene interaction in an integrated multi-relational graph

    Wei Wang, Xi Yang, Chengkun Wu, Canqun Yang Article:544
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  4. Software

    ImageJ2: ImageJ for the next generation of scientific image data

    Curtis T. Rueden, Johannes Schindelin, Mark C. Hiner… Article:529
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  5. Research Article

    Modeling, validation and verification of three-dimensional cell-scaffold contacts from terabyte-sized images

    Peter Bajcsy, Soweon Yoon, Stephen J. Florczyk, Nathan A. Hotaling… Article:526
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  6. Software

    SCIFIO: an extensible framework to support scientific image formats

    Mark C. Hiner, Curtis T. Rueden, Kevin W. Eliceiri Article:521
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  7. Methodology article

    Analyzing the similarity of samples and genes by MG-PCC algorithm, t-SNE-SS and t-SNE-SG maps

    Xingang Jia, Qiuhong Han, Zuhong Lu Article:512
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  8. Research article

    Towards a supervised classification of neocortical interneuron morphologies

    Bojan Mihaljević, Pedro Larrañaga, Ruth Benavides-Piccione, Sean Hill… Article:511
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  9. Research Article

    Brain medical image diagnosis based on corners with importance-values

    Linlin Gao, Haiwei Pan, Qing Li, Xiaoqin Xie, Zhiqiang Zhang… Article:505
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  10. Software

    bcROCsurface: an R package for correcting verification bias in estimation of the ROC surface and its volume for continuous diagnostic tests

    Khanh To Duc Article:503
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  11. Software

    TRAVeLer: a tool for template-based RNA secondary structure visualization

    Richard Elias, David Hoksza Article:487
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  12. Research Article

    Towards pixel-to-pixel deep nucleus detection in microscopy images

    Fuyong Xing, Yuanpu Xie, Xiaoshuang Shi, Pingjun Chen, Zizhao Zhang… Article:472
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  13. Research Article

    Bioimage classification with subcategory discriminant transform of high dimensional visual descriptors

    Yang Song, Weidong Cai, Heng Huang, Dagan Feng, Yue Wang, Mei Chen Article:465
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  14. Software

    PanoromiX: a time-course network medicine platform integrating molecular assays and pathophenotypic data

    Ruoting Yang, Daniel Watson, Joshua Williams, Raina Kumar… Article:458
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  15. Methodology article

    COMBImage: a modular parallel processing framework for pairwise drug combination analysis that quantifies temporal changes in label-free video microscopy movies

    Efthymia Chantzi, Malin Jarvius, Mia Niklasson, Anna Segerman… Article:453
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  16. Software

    pyHIVE, a health-related image visualization and engineering system using Python

    Ruochi Zhang, Ruixue Zhao, Xinyang Zhao, Di Wu, Weiwei Zheng… Article:452
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  17. Software

    EpiViewer: an epidemiological application for exploring time series data

    Swapna Thorve, Mandy L. Wilson, Bryan L. Lewis, Samarth Swarup… Article:449
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  18. Research article

    FogBank: a single cell segmentation across multiple cell lines and image modalities

    Joe Chalfoun, Michael Majurski, Alden Dima, Christina Stuelten… Article:431
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  19. Research Article

    Subcellular protein expression models for microsatellite instability in colorectal adenocarcinoma tissue images

    Violeta N. Kovacheva, Nasir M. Rajpoot Article:430
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  20. Methodology article

    Modified Pearson correlation coefficient for two-color imaging in spherocylindrical cells

    Sonisilpa Mohapatra, James C. Weisshaar Article:428
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