Abstract
In biological systems, photoreactive derivatives have been widely applied to study specific interactions of receptor molecules with their ligands by photoaffinity labeling (1–3). While the receptors are generally proteins (e.g., enzymes, immunoglobulins, or hormone receptors), the ligands differ widely in their molecular structure (e.g., sugars, amino acids, nucleotides, or oligomers of these compounds).
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Bayley, H. and Knowles, J. R. (1977) Photoaffinity labeling. Methods Enzymol. 46, 69–114.
Bayley, H. (1983) Photogenerated reagents in biochemistry and molecular biology, in Laboratory Techniques in Biochemistry, vol. 12 (Work, T. S. and Burdon, R. H., eds.), Elsevier, Amsterdam.
Schäfer, H.-J. (1987) Photoaffinity labeling and photoaffinity crosslinking of enzymes, in Chemical Modifications of Enzymes, Active Site Studies (Eyzaguirre, J., ed.), Ellis Horwood, Chichester, pp. 45–62.
Smith, K. C. (1962) Dose dependent decrease in extractability of DNA from bacteria (by UV-light). Biochem. Biophys. Res. Commun. 8, 157–163.
Shetlar, M. D. (1980) Crosslinking of proteins to nucleic acids by UV-light. Photochem. Photobiol. Rev. 5, 105–197.
Welsh, J. and Cantor, C. R. (1984) Protein-DNA crosslinking. Trends Biochem. Sci. 9, 505–508.
Ekert, B., Giocanti, N., and Sabattier, R. (1986) Study of several factors in RNA-protein crosslink formation induced by ionizing radiations within 70S ribosomes of E. coli MRE 600. Int. J. Radiat. Biol. 50, 507–525.
Lesko, S. A., Drocourt, J. L., and Yang, S. U. (1982) DNA-protein and DNA interstrand crosslinks induced in isolated chromatin by H2O2. and Fe-EDTA-che-lates. Biochemistry 21, 5010–5015.
Wedrychowsky, A., Ward, W. S., Schmidt, W. N., and Hnilica, L. S. (1985) Chromium-induced crosslinking of nuclear proteins and DNA. J. Biol. Chem. 260, 7150–7155.
Summerfield, F. W. and Tappel, A. L. (1984) Crosslinking of DNA in liver and testis of rats fed 1,3-propanediol. Chem. Biol. Interact. 50, 87–96.
Dose, K., Bieger-Dose, A., Martens, K.-D., Meffert, R., Nawroth, T., Risi, S., et al. (1987) Survival under space vacuum-biochemical aspects. Proc. 3rd Eur. Symp. Life Sci. Res. in Space (ESA SP-271), pp. 193–195.
Lin, S. Y. and Riggs, A. D. (1974) Photochemical attachment of lac repressor to bromodeoxyuridine-substituted lac operator by UV radiation. Proc. Natl. Acad. Sci. USA 71, 947–951.
Evans, R. K., Johnson, J. D., and Haley, B. E. (1986) 5-Azido-2′-deoxyuridine-5′-triphosphate: a photoaffinity labeling reagent and tool for the enzymatic synthesis of photoactive DNA. Proc. Natl. Acad. Sci. USA 83, 5382–5386.
Bartholomew, B., Kassavetis, G. A., Braun, B. R., and Geiduschek, E. P. (1990) The subunit structure of Saccharomyces cerevisiae transcription factor IIIC probed with a novel photocrosslinking reagent. EMBO J. 9, 2197–2205.
Lee, D. K., Evans, R. K., Blanco, J., Gottesfeld, J., and Johnson, J. D. (1991) Contacts between 5 S DNA and Xenopus TFIIIA identified using 5-azido-2′-deoxyuridine-substituted DNA. J. Biol. Chem. 266, 16,478–16,484.
Blatter, E. E., Ebright, Y. W., and Ebright, R. H. (1992) Identification of an amino acid-base contact in the GCN4-DNA complex by bromouracil-mediated photocrosslinking. Nature 83, 650–652.
Willis, M. C., Hicke, B. J., Uhlenbeck, O. C., Cech, T. R., and Koch, T. H. (1993) Photocrosslinking of 5-iodouracil-substituted RNA and DNA to proteins. Science 262, 1255–1257.
Hicke, B. J., Willis, M. C., Koch, T. H., and Cech, T. R. (1994) Telomeric proteinDNA point contacts identified by photo-cross-linking using 5-bromodeoxyuridine. Biochemistry 33, 3364–3373.
Bartholomew, B., Braun, B. R., Kassavetis, G. A., and Geiduschek, E. P. (1994) Probing close DNA contacts of RNA-polymerase III transcription complexes with the photoactive nucleoside 4-thiodeoxythymidine. J. Biol. Chem. 269, 18,090–18,095.
Meffert, R. and Dose, K. (1988) UV-induced crosslinking of proteins to plasmid pBR322 containing 8-azidoadenine 2′-deoxyribonucleotides. FEBS Lett. 239, 190–194.
Meffert, R., Rathgeber, G., Schäfer, H.-J., and Dose, K. (1990) UV-induced cross-inking of Tet repressor to DNA containing tet operator sequences and 8-azido-adenines. Nucleic Acids Res. 18, 6633–6636.
Bartholomew, B., Tinker, R. L., Kassavetis, G. A., and Geiduschek, E. P. (1995) Photochemical crosslinking assay for DNA tracking by replication proteins. Methods Enzymol. 262, 476–494.
Schäfer, H.-J., Scheurich, P., and Dose, K. (1978) Eine einfache darstellung von 8-N3ATP: ein Agens zur Photoaffinitätsmarkierung von ATP-bindenden Proteinen. Liebigs Ann. Chem. 1978, 1749–1753.
Laemmli, U. K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680.
Adams, L. D. and Sammons, D. W. (1981) A unique silver staining procedure for color characterization of polypeptides. Electrophoresis 2, 155–165.
Westermeier, R., Schickle, H., Thesseling, G., and Walter, W. W. (1988) Densitometrie von gelelektrophoresen. GIT Labor-Medizin 4/88, 194–202.
Braun, A. and Merrick, B. (1975) Properties of UV-light-mediated binding of BSA to DNA. Photochem. Photobiol. 21, 243–247.
Staros, J. V., Bayley, H., Standring, D. N., and Knowles, J. R. (1978) Reduction of aryl azides by thiols: implications for the use of photoaffinity reagents. Biochem. Biophys. Res. Commun. 80, 568–572.
Koberstein, R., Cobianchi, L., and Sund, H. (1976) Interaction of the photoaffinity label 8-azido-ADP with glutamate dehydrogenase. FEBS Lett. 64, 176–180.
Vignais, P. V. and Lunardi, J. (1985) Chemical probes of the mitochondrial ATP synthesis and translocation. Annu. Rev. Biochem. 54, 977–1014.
Czarnecki, J. J. (1978) Ph.D. Thesis, University of Wyoming, Laramie, WY.
Englund, P. T., Kelly, R. B., and Kornberg, A. (1969) Enzymatic synthesis of DNA: binding of DNA to DNA polymerase. J. Biol. Chem. 244, 3045–3052.
Garin, J., Vignais, P. V., Gronenborn, A. M., Clore, G. M., Gao, Z., and Bäuerlein, E. (1988) 1H-NMR studies on nucleotide binding to the catalytic sites of bovine mitochondrial F1-ATPase. FEBS Lett. 242, 178–182.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2001 Humana Press Inc., Totowa, NJ
About this protocol
Cite this protocol
Meffert, R., Dose, K., Rathgeber, G., Schäfer, HJ. (2001). Ultraviolet Crosslinking of DNA-Protein Complexes via 8-Azidoadenine. In: Moss, T. (eds) DNA-Protein Interactions. Methods in Molecular Biology, vol 148. Humana Press. https://doi.org/10.1385/1-59259-208-2:323
Download citation
DOI: https://doi.org/10.1385/1-59259-208-2:323
Publisher Name: Humana Press
Print ISBN: 978-0-89603-625-3
Online ISBN: 978-1-59259-208-1
eBook Packages: Springer Protocols