Skip to main content

Nitrogen Fixation, a Molybdenum-Requiring Process

  • Chapter
  • First Online:
Molybdenum Cofactors and Their role in the Evolution of Metabolic Pathways

Part of the book series: SpringerBriefs in Molecular Science ((SB BIOMETALS))

Abstract

Nitrogen fixation is the most important input of biologically available nitrogen in Earth’s ecosystems and is a metabolic ability possessed only by some Prokaryotes. To date four classes of nitrogenase enzymes have been characterized. Three nitrogenases are homologous enzymes with similar protein subunit composition and metal cofactor structure; these are the Mo-nitrogenase, V-nitrogenase, and Fe-only nitrogenase. How these three systems evolved and which of them first appeared on Earth is still under debate. The best studied system is the Fe-Mo-co based although several comparative analyses have been performed in past years.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Bibliography

  • Anantharaman, V., & Aravind, L. (2002). MOSC domains: ancient, predicted sulfur-carrier domains, present in diverse metal–sulfur cluster biosynthesis proteins including Molybdenum cofactor sulfurases. FEMS Microbiology Letters, 207(1), 55–61.

    CAS  Google Scholar 

  • Boyd, E. S., Hamilton, T. L., & Peters, J. W. (2011). An alternative path for the evolution of biological nitrogen fixation. Frontiers in microbiology, 2.

    Google Scholar 

  • Burke, D. H., Alberti, M., & Hearst, J. E. (1993a). The Rhodobacter capsulatus chlorin reductase-encoding locus, bchA, consists of three genes, bchX, bchY, and bchZ. Journal of Bacteriology, 175(8), 2407–2413.

    CAS  Google Scholar 

  • Burke, D. H., Hearst, J. E., & Sidow, A. (1993b). Early evolution of photosynthesis: clues from nitrogenase and chlorophyll iron proteins. Proceedings of the National Academy of Sciences, 90(15), 7134–7138.

    Article  CAS  Google Scholar 

  • Cheng, Q., Day, A., Dowson-Day, M., Shen, G. F., & Dixon, R. (2005). The Klebsiella pneumoniae nitrogenase Fe protein gene (nifH) functionally substitutes for the chlL gene in Chlamydomonas reinhardtii. Biochemical and biophysical research communications, 329(3), 966–975.

    Article  CAS  Google Scholar 

  • Dixon, R., & Kahn, D. (2004). Genetic regulation of biological nitrogen fixation. Nature Reviews Microbiology, 2(8), 621–631.

    Article  CAS  Google Scholar 

  • Dos Santos, P. C., Fang, Z., Mason, S. W., Setubal, J. C., & Dixon, R. (2012). Distribution of nitrogen fixation and nitrogenase-like sequences amongst microbial genomes. BMC Genomics, 13(1), 162.

    Article  CAS  Google Scholar 

  • Emiliani, G., Fondi, M., LiĂ², P., & Fani, R. (2010). Evolution of metabolic pathways and evolution of genomes (pp. 37–68). Netherlands: Springer.

    Google Scholar 

  • Fani, R., Gallo, R., & LiĂ², P. (2000). Molecular evolution of nitrogen fixation: the evolutionary history of the nifD, nifK, nifE, and nifN genes. Journal of Molecular Evolution, 51(1), 1–11.

    CAS  Google Scholar 

  • Fay, P. (1992). Oxygen relations of nitrogen fixation in cyanobacteria. Microbiological Reviews, 56(2), 340.

    CAS  Google Scholar 

  • Fujita, Y., Matsumoto, H., Takahashi, Y., & Matsubara, H. (1993). Identification of a nifDK-like gene (ORF467) involved in the biosynthesis of chlorophyll in the cyanobacterium Plectonema boryanum. Plant and Cell Physiology, 34(2), 305–314.

    CAS  Google Scholar 

  • Hamilton, T. L., Ludwig, M., Dixon, R., Boyd, E. S., Dos Santos, P. C., Setubal, J. C., et al. (2011). Transcriptional profiling of nitrogen fixation in Azotobacter vinelandii. Journal of bacteriology, 193(17), 4477–4486.

    Google Scholar 

  • Havemeyer, A., Bittner, F., Wollers, S., Mendel, R., Kunze, T., & Clement, B. (2006). Identification of the missing component in the mitochondrial benzamidoxime prodrug-converting system as a novel molybdenum enzyme. Journal of Biological Chemistry, 281(46), 34796–34802.

    Article  CAS  Google Scholar 

  • Hernandez, J. A., George, S. J., & Rubio, L. M. (2009). Molybdenum trafficking for nitrogen fixation. Biochemistry, 48(41), 9711–9721.

    Article  CAS  Google Scholar 

  • Hu, Y., & Ribbe, M. W. (2011). Biosynthesis of nitrogenase FeMoco. Coordination Chemistry Reviews, 255(9), 1218–1224.

    Article  CAS  Google Scholar 

  • Jensen, R. A. (1976). Enzyme recruitment in evolution of new function. Annual Reviews in Microbiology, 30(1), 409–425.

    Article  CAS  Google Scholar 

  • Kim, J., & Rees, D. C. (1992). Structural models for the metal centers in the nitrogenase molybdenum-iron protein. Science, 257(5077), 1677–1682.

    Article  CAS  Google Scholar 

  • Kozmin, S. G., Leroy, P., Pavlov, Y. I., & Schaaper, R. M. (2008). YcbX and yiiM, two novel determinants for resistance of Escherichia coli to N-hydroxylated base analogues. Molecular Microbiology, 68(1), 51–65.

    Article  CAS  Google Scholar 

  • Lee, S. C., & Holm, R. H. (2003). Speculative synthetic chemistry and the nitrogenase problem. Proceedings of the National Academy of Sciences, 100(7), 3595–3600.

    Article  CAS  Google Scholar 

  • Margulis, L. (1993). Symbiosis in cell evolution: Microbial communities in the Archean and Proterozoic eons.

    Google Scholar 

  • Pau, R. N. (2004). Molybdenum uptake and homeostasis. In W. Klipp, B. Masepohl, J. R. Gallon, & W. E. Newton (Eds.), Genetics and regulation of nitrogen fixation in free-living bacteria (pp. 225–256). Dordrecht, The Netherlands: Kluwer Academic Publishers.

    Google Scholar 

  • Raymond, J., Siefert, J. L., Staples, C. R., & Blankenship, R. E. (2004). The natural history of nitrogen fixation. Molecular Biology and Evolution, 21(3), 541–554.

    Article  CAS  Google Scholar 

  • Ribbe, M., Gadkari, D., & Meyer, O. (1997). N2 Fixation by Streptomyces thermoautotrophicus involves a molybdenum-dinitrogenase and a manganese-superoxide oxidoreductase that couple N2 reduction to the oxidation of superoxide produced from O2 by a molybdenum-CO dehydrogenase. Journal of Biological Chemistry, 272(42), 26627–26633.

    Article  CAS  Google Scholar 

  • Schwarz, G., Mendel, R. R., & Ribbe, M. W. (2009). Molybdenum cofactors, enzymes and pathways. Nature, 460(7257), 839–847.

    Article  CAS  Google Scholar 

  • Silver, V. S., & Postgate, J. R. (1973). Evolution of asymbiotic nitrogen fixation. Journal of Theoretical Biology, 56, 340–373.

    Google Scholar 

  • Staples, C. R., Lahiri, S., Raymond, J., Von Herbulis, L., Mukhophadhyay, B., & Blankenship, R. E. (2007). Expression and association of group IV nitrogenase NifD and NifH homologs in the non-nitrogen-fixing archaeon Methanocaldococcus jannaschii. Journal of Bacteriology, 189(20), 7392–7398.

    Article  CAS  Google Scholar 

  • Suzuki, J. Y., Bollivar, D. W., & Bauer, C. E. (1997). Genetic analysis of chlorophyll biosynthesis. Annual Review of Genetics, 31(1), 61–89.

    Article  CAS  Google Scholar 

  • Wollers, S., Heidenreich, T., Zarepour, M., Zachmann, D., Kraft, C., Zhao, Y., & Bittner, F. (2008). Binding of sulfurated molybdenum cofactor to the C-terminal domain of ABA3 from Arabidopsis thaliana provides insight into the mechanism of molybdenum cofactor sulfuration. Journal of Biological Chemistry, 283(15), 9642–9650.

    Article  CAS  Google Scholar 

  • Yan, Y., Ping, S., Peng, J., Han, Y., Li, L., Yang, J., & Lin, M. (2010). Global transcriptional analysis of nitrogen fixation and ammonium repression in root-associated Pseudomonas stutzeri A1501. BMC Genomics, 11(1), 11.

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Luana Presta .

Rights and permissions

Reprints and permissions

Copyright information

© 2015 The Author(s)

About this chapter

Cite this chapter

Presta, L., Fondi, M., Emiliani, G., Fani, R. (2015). Nitrogen Fixation, a Molybdenum-Requiring Process. In: Molybdenum Cofactors and Their role in the Evolution of Metabolic Pathways. SpringerBriefs in Molecular Science(). Springer, Dordrecht. https://doi.org/10.1007/978-94-017-9972-0_5

Download citation

Publish with us

Policies and ethics