Skip to main content

Gel Electrophoresis of DNA

  • Chapter
Techniques in Molecular Biology
  • 247 Accesses

Abstract

From other chapters it will be evident that the molecular biologist often needs to separate the components of a complex mixture of DNA molecules either analytically or preparatively. Although it is sometimes possible to use density or affinity techniques to separate DNA molecules on the basis of their base compositions, such an approach cannot be used with complex mixtures or when, as is often the case, different DNAs have similar base compositions. Separations based on size differences are far more generally useful. The identification of restriction fragments containing a particular sequence of bases (e.g. a particular gene) depends on the separation of DNA fragments according to size (Chapter 15), as does the mapping of the position of such a sequence in the intact DNA. Separated fragments can be recovered and then replicated indefinitely by cloning (Chapters 11, 12 and 13). The sequencing of DNA also relies on the ability to resolve nucleic acids by size (Chapter 16).

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. E.M. Southern, ‘Measurement of DNA length by gel electrophoresis’, Anal. Biochem., 100 (1979), 319–23.

    Article  PubMed  CAS  Google Scholar 

  2. A.N. Best, D.P. Allison and G.D. Novelli, ‘Purification of supercoiled DNA of plasmid ColE1 by RPC-5 chromatography’, Anal. Biochem., 114 (1981), 235–43.

    Article  PubMed  CAS  Google Scholar 

  3. P.H. Johnson, M.J. Miller and L.I. Grossman, ‘Electrophoresis of DNA in agarose gels. II. Effects of loading mass and electroendosmosis on electrophoretic mobilities’, Anal. Biochem., 102 (1980), 159–62.

    Article  PubMed  CAS  Google Scholar 

  4. J.J. Kopchick, B.R. Cullen and D.W. Stacey, ‘Rapid analysis of small nucleic acid samples by gel electrophoresis’, Anal. Biochem., 115 (1981), 419–23.

    Article  PubMed  CAS  Google Scholar 

  5. E.M. Southern, ‘Gel electrophoresis of restriction fragments’, Methods in Enzymology, 68 (1979), 152–76.

    Article  PubMed  CAS  Google Scholar 

  6. Johnson, Miller and Grossman, ‘Electrophoresis of DNA in agarose gels’.

    Google Scholar 

  7. C.F. Brunk and L. Simpson, ‘Comparison of various ultraviolet sources for fluorescent detection of ethidium bromide-DNA complexes in polyacrylamide gels’, Anal. Biochem., 82 (1977), 455–62.

    Article  PubMed  CAS  Google Scholar 

  8. L.L. Somerville and K. Wang, ‘The ultrasensitive silver “protein” stain also detects nanograms of nucleic acids’, Biochem. Biophys. Res. Comm., 102 (1981), 53–8.

    Article  PubMed  CAS  Google Scholar 

  9. A. Prunell, ‘A photographic method to quantitate DNA in gel electrophoresis’, Methods in Enzymology, 65 (1980), 353–8.

    Article  PubMed  CAS  Google Scholar 

  10. R.A. Laskey and A.D. Mills, ‘Quantitative film detection of 3H and 14C in polyacrylamide gels by fluorography’, Eur. J. Biochem., 56 (1975), 335–41.

    Article  PubMed  CAS  Google Scholar 

  11. R.A. Laskey and A.D. Mills, ‘Enhanced autoradiographic detection of 32P and 125I using intensifying screens and hypersensitized film’, FEBS Letts., 82 (1977), 314–16.

    Article  CAS  Google Scholar 

  12. R.A. Laskey, ‘The use of intensifying screens or organic scintillators for visualizing radioactive molecules resolved by gel electrophoresis’, Methods in Enzymology, 65 (1980), 363–71.

    Article  PubMed  CAS  Google Scholar 

  13. Southern, ‘Measurement of DNA length’.

    Google Scholar 

  14. R.G. Duggleby, H. Kinns and J.I. Rood, ‘A computer program for determining the size of DNA restriction fragments’, Anal. Biochem., 110 (1981), 49–55.

    Article  PubMed  CAS  Google Scholar 

  15. Southern, ‘Measurement of DNA length’.

    Google Scholar 

  16. Southern ‘Gel electrophoresis’.

    Google Scholar 

  17. H.E. Schaffer and R.R. Sederoff, ‘Improved estimation of DNA fragment lengths from agarose gels’, Anal. Biochem., 115 (1981), 113–22.

    Article  PubMed  CAS  Google Scholar 

  18. R.C.-A. Yang, J. Lis and R. Wu, ‘Elution of DNA from agarose gels after electrophoresis’, Methods in Enzymology, 68 (1979), 176–82.

    Article  PubMed  CAS  Google Scholar 

  19. H.O. Smith, ‘Recovery of DNA from gels’, Methods in Enzymology, 65 (1980), 371–80.

    Article  PubMed  CAS  Google Scholar 

  20. C. W. Chen and C.A. Jr. Thomas, ‘Recovery of DNA segments from agarose gels’, Anal. Biochem., 101 (1980), 339–41.

    Article  PubMed  CAS  Google Scholar 

  21. Smith, ‘Recovery of DNA from gels’.

    Google Scholar 

  22. G. Dretzen, M. Bellard, P. Sassone-Corsi and P. Chambon, ‘A reliable method for the recovery of DNA fragments from agarose and acrylamide gels’, Anal. Biochem., 112 (1981), 295–8.

    Article  PubMed  CAS  Google Scholar 

  23. Southern, ‘Gel electrophoresis’.

    Google Scholar 

  24. F.C. Wheeler, R.A. Fishel and R.C. Warner, ‘Agarose gel electrophoresis of circular DNA of replicative form of bacteriophage G4’, Anal. Biochem., 78 (1977), 260–75.

    Article  PubMed  CAS  Google Scholar 

  25. Smith, ‘Recovery of DNA from gels’.

    Google Scholar 

  26. Chen and Thomas, ‘Recovery of DNA segments’.

    Google Scholar 

  27. J. Langridge, P. Langridge and P.L. Bcrgquist, ‘Extraction of nucleic acids from agarose gels’, Anal. Biochem., 103 (1980), 264–271.

    Article  PubMed  CAS  Google Scholar 

  28. Wheeler, Fishel and Warner, ‘Agarose gel electrophoresis’.

    Google Scholar 

  29. Ibid.

    Google Scholar 

  30. M.H. Edgell and F.I. Polsky, ‘Use of preparative gel electrophoresis for DNA fragment isolation’, Methods in Enzymology, 65 (1980), 319–27.

    Article  PubMed  CAS  Google Scholar 

  31. H.M. Southern, ‘A preparative gel electrophoresis apparatus for large scale separations’, Anal. Biochem., 100 (1979), 304–18.

    Article  PubMed  CAS  Google Scholar 

  32. Edgell and Polsky, ‘Use of preparative gel electrophoresis’.

    Google Scholar 

  33. T. Maniatis, A. Jeffrey and J.H. van de Sande, ‘Chain length determination of small double-and single-stranded DNA molecules by polyacrylamide gel electrophoresis’, Biochemistry, 14 (1975), 3787–94.

    Article  PubMed  CAS  Google Scholar 

  34. T. Maniatis and A. Efstratiadis, ‘Fractionation of low molecular weight DNA or RNA in polyacrylamide gels containing 98% formamide or 7M urea’, Methods in Enzymology, 65 (1980), 299–305.

    Article  PubMed  CAS  Google Scholar 

  35. P.G.N. Jeppesen, ‘Separation and isolation of DNA fragments using linear polyacrylamide gradient gel electrophoresis’, Methods in Enzymology, 65 (1980), 305–19.

    Article  PubMed  CAS  Google Scholar 

  36. J.N. Hansen, ‘Use of solubilizable acrylamide disulfide gels for isolation of DNA fragments suitable for sequence analysis’, Anal. Biochem., 116 (1981), 146–151.

    Article  PubMed  CAS  Google Scholar 

  37. R.L. Pearson, J.F. Weiss and A.D. Kelmers, ‘Improved separation of transfer RNAs on polychlorotrifluoroethylene-supported reversed-phase chromatography columns’, Biochim. Biophvs. Acta, 228 (1971), 770–4.

    CAS  Google Scholar 

  38. R.D. Wells, S.C. Hardies, G.T. Horn, B. Klein, J.E. Larson, S.K. Neuendorf, N. Panayotatos, R.K. Patient and E. Selsing, ‘RPC-5 column chromatography for the isolation of DNA fragments’, Methods in Enzymology, 65 (1980), 327–47.

    Article  PubMed  CAS  Google Scholar 

Download references

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1983 John M. Walker and Wim Gaastra

About this chapter

Cite this chapter

Boffey, S.A. (1983). Gel Electrophoresis of DNA. In: Walker, J.M., Gaastra, W. (eds) Techniques in Molecular Biology. Springer, Dordrecht. https://doi.org/10.1007/978-94-011-6563-1_14

Download citation

  • DOI: https://doi.org/10.1007/978-94-011-6563-1_14

  • Publisher Name: Springer, Dordrecht

  • Print ISBN: 978-0-7099-2755-6

  • Online ISBN: 978-94-011-6563-1

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics