Abstract
Eukaryotic cells contain two independent but interactive genetic systems com-prising of nuclear DNA and mitochondrial DNA (mtDNA). MtDNA represents less than 1% of total cellular DNA. However, it encodes gene products essential for cellular function. Thus, damage to mtDNA either by endogenous or environmental agents can impair cellular functions.1 Unlike nuclear DNA, human mtDNA contains no introns, has no protective histones, and is exposed to reactive oxygen species (ROS) generated by oxidative phosphorylation. Replication of mtDNA could also be prone to error.2–5 Perhaps due to these reasons, mtDNA accumulates mutations at least 10 times more frequently than does nuclear DNA.6,7
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Satoh MS, Huh NH, Rajewsky T et al. Enzymatic removal of 06-ethylguanine-Nnitrosurea in vivo. J Biol Chem 1988; 263: 6854–6856.
Kunkel TA, Loeb LA. Fidelity of mammalian DNA polymerases Science 1981; 213: 765–767.
Matsukage A, Bohn EW, Wilson SH. On the DNA polymerase III of mouse myeloma:partial purification and characterization. Biochemistry 1975; 14: 1006–1020.
Shay JW, Werbin H. Are mitochondrial DNA mutations involved in the carcinogenic process? Mut Res 1987; 186: 149–16o.
Torri AF, Kunkel TA, Englund PT. A beta-like DNA polymerase from the mitochondrion of the trypanosomaatid Crithidia fasciculata. J Biol Chem 1994; 269: 8165–8171.
Grossman LI, Shoubridge EA. Mitochondrial genetics and human disease. BioEssay 1996; 18: 983–991.
Johns DR. Mitochondrial DNA and disease. New Eng J Med 1995; 333: 638–644.
Friedberg EC, Walker GC, and Siede W. In: DNA repair and mutagenesis. American Society for Microbiology Press, Washington, D. C. 1995.
Clayton DA, Doda JN, Friedberg EC. The absence of pyrimidine dimer repair mechanism in mammalian mitochondria. Proc Natl Acad Sci 1974; 71: 2777–2781.
Beal F. Aging, energy, and oxidative stress in neurodegenerative diseases. Ann Neurol 1995; 38: 357–366.
Demple B, Harrison L. Repair of oxidative damage to DNA: Enzymology and biology. Annu Rev Biochem 1994; 63: 915–948.
Kasai H, Nishimura MK, Hagen TM. Formation of 8-hydroxydeoxyguanosine in DNA by oxygen radicals and its bilogical significance. In: Sies H, ed. Oxidative Stress: Oxidants and Antioxidants. London: Academic Press, 1991, 99–116.
Grollman AP, Moriya M. Mutagenesis by 8-oxoguanine: An enemy within. Trends Genet 1993, 9: 246–249.
Michaels ML, Miller JH. The GO system protects organisms from the mutagenic effect of the spontaneous lesion 8-hydroxyguanine (7,8-dihydro-8-oxoguanine). J. Bacteriol 1992, 174: 6321–6325.
Evans CH, Stefanovic-Racic M, Lancaster J. Nitric oxide and its role in orthopedic disease. Clin Orth and Related Res 1995; 312: 275–294.
Bates TE, Loesch A, Burnstock G et al. and Clark JB. Mitochondrial nitric oxide synthase: an ubiquotous regulator of oxidative phosphorylation. Biochem Biophys Res Comm 1996; 218: 40–44.
Jaruga P, Dizdaroglu. Repair of products of oxidative DNA base damage in human cells. Nucleic Acid Res 1996; 24: 1389–1394.
Hao H, and Moraes CT. Functional and molecular mitochondrial abnormalities associated with a C to T transition at position 3256 of the human mitochondrial genome. J. Biol Chem 1996; 271: 2347–2352.
Kadenbach B, Munscher C, Frank V et al. Human aging is associated with stochastic somatic mutations of mitochondrial DNA. Mut Res 1995; 338: 161–172.
Bohr VA. DNA repair fine structure and its relations to genomic instability. Carcinogenesis 1995; 16: 2885–2892.
Hixon SC, Ocak A et al. Resistance to adriamycin cytotoxicity among respiratory deficient mutants in yeast. Antimicro Agents Chemother 1980, 1 7: 443–449.
Kule C, Ondrejickova O, Verner K. Doxorubicin, Daunorubicin and Mitoxantrone cytotoxicity in yeast. Mol Pharmacology 1994; 46: 1234–1240.
Doroshow JH, Davies KJA. Redox cycling of anthracycline by cardiac mitochondria. II. Formation of superoxide anion, hydrogen peroxide, and hydroxyl radical. J Biol Chem 1986, 261: 3068–3074.
Corral-Debrinski M, Shoffner JM, Lott MT, Wallace DC. Association of mitochondrial DNA damage with aging and coronary atherosclerotic heart disease. Mut Res 1992; 275: 169–180.
Hattori K, Ogawa T, Kondo T et al. Cardiomyopathy with mitochondrial DNA mutations. Am Heart J 1991; 122: 866–869.
Luft R. The development of mitochondrial medicine. Proc Natl Aced Sci 1994; 91: 873108738.
Shoffner JM, Wallace DC. Heart disease and mitochondrial DNA mutations. Heart Disease Stroke 1992; 235–241.
Yoneda M, Chomyn A, Martinuzzi A et al. Marked replicative advantage of human mtDNA carrying a point mutation that causes the MELAS encephalomyopathy. Proc Natl Acad Sci USA 1992; 89: 11164–11168.
Albertini AM, Hofer M, Calos MP et al. On the formation of spontaneous deletions: The importance of short sequence homologies in the generation of large deletions. Cell 1982; 29: 319–328.
Mita S, Rizzuto R, Moraes CT et al. Recombination via flanking direct repeats is a major cause of large-scale deletions of human mitochondrial DNA. Nucleic Acids Res 1990; 18: 561–567.
Ripley LS. Frame shift mutation: Determinants of specificity. Annu Rev Genet 1990; 24: 189–213.
Butler DK, Yasuda LE, Yao M-C. Induction of large DNA palindrome formation in yeast: implications for gene amplification and genome stability in eukaryotes. Cell 1996; 87: 1115–1122.
Piko L, Hougham AJ, Bulpitt KJ. Studies of sequence heterogeneity of mitochondrial DNA from rat and mouse tissues: Evidence for an increased frequency of deletion/addition with aging. Mechanisms of Aging and Development 1988; 43: 279–293.
Muller-Hocker J. Cytochrome-c-oxidase deficient cardiomyocytes in the human heart-an age related phenomenon. Am J. Path 1989; 134: 1167–1173.
Shigenaga MK, Hagen TM, Ames B. Oxidative damage and mitochondrial decay in aging. Proc Natl Acad Sci 1994; 91: 10771–10778.
Memisoglu A, Samson L. DNA repair functions in heterologous cells. Crit Rev Biochem Mol Biol 1996; 31: 405–447.
Maki H, Sekiguchi M. MutT protein specifically hydrolyses a potent mutagenic substrate for DNA synthesis. Nature 1992; 355: 273–275.
Sakumi K, Furuichi M, Tsuzuki T et al. Cloning and expression of cDNA for a human enzyme that hydrolyzes 8-oxo-dGTP, a mutagenic substrate for DNA synthesis. J Biol Chem 1993; 268: 23524–23530.
Slupska MM, Baiklov C, Luther WM et al. Cloning and sequencing a human homolog (hMYH) of the Escherichia coli mutY gene whose function is required for the repair of oxidative DNA damage. J Bacteriol 1996; 178: 3885–3892.
Nash HM, Bruner SD et al. Cloning of yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily. Curr Biol 1996, 6: 968–980.
Lu R, Nash HM, Verdine GL. A mammalian DNA repair enzyme that excises oxidatively damaged guanine maps to a locus frequently lost in lung cancer. Curr Biol 1997, 7: 397–407.
Aburatani H, Hippo Y, Ishida T et al. Cloning a characterization of mammalian 8-hydroxyguanine-specific DNA glycosylase/apurinic, apyrimidinic lyase, a functional MutM homolog. Cancer Res 1997, 57: 2151–2156.
Arai K, Morishita K, Shinmura K et al. Cloning of human homolog of the yeast OGGi gene that is involved in the repair of oxidative DNA damage. Oncogene 1997, 14: 2857–2861.
Radicella JP, Dherin C et al. Cloning and characterization of hOGGi, a human homolog of the OGGi gene of Saccharomyces cerevisiae. Proc Natl Acad Sci 1997, 94: 8010–8015.
Roldan-Arjona T, Wei Y-F et al. Molecular cloning and functional expression of a human cDNA encoding the antimutator enzyme 8-hydroxyguanine-DNA glycosylase. Proc Natl Acad Sci. 1997, 94: 8021–8026.
Kang D, Nishida J, Iyama A et al. Intracellular localization of 8–oxo–dGTPase in human cells, with special reference to the role of the enzyme in mitochondria. J. Biol Chem 1995, 270–14659–14665.
Breimer LH. Urea-DNA glycosylase in mammalian cells. Biochemistry 1983; 22: 4192–4197.
Doetsch PW, Henner WD, Cunningham RP et al. A highly conserved endonuclease activity in Escherichia coli, bovine, and human cells recognizes oxidative DNA damage at sites of pyrimidines. Mol Cell Biol 1987; 7: 26–32.
Kim J, Linn S. Purification and characterization of UV endonucleases I and II from murine plasmacytoma cells. J Biol Chem 1989; 264: 2739–2745.
Melamede RJ, Hatahet Z, Kow YW et al. Isolation and characterization of endonuclease VIII from Escherichia coli. Biochemistry 1994; 33: 1255–1264.
Tomkinson AE, Bonk RT, Kim J et al. Mammalian mitochondrial endonuclease activities specific for ultraviolet-irradiated DNA. Nucleic Acids Res 1990; 18: 929–935.
Dizaroglu M, Karakaya A, Jaruga P, Slullahaug, Krokan HE. Novel activities of uracil-DNA glycosylase for cytosine-derived products of oxidative DNA damage. Nucl Acid Res 1996; 24: 418–422.
Nilsen H, Otterlei M, Haug T et al. Nuclear and mitochondrial uracil-DNA glycosylases are generated by alternative splicing and transcription from different positions in the UNG gene. Nucleic Acids Res 1997; 25: 750–755.
Nagelhus T, Haug T, Singh KK et al. A sequence in the N-terminal region of human uracil-DNA glycosylase with homology to XPA interacts with the C-terminal part of the 34 kDa subunit of replication protein A. J Biol Chem 1997; 272: 6561–6566.
Ladner RD, Caradonna SJ. The human dUTPase gene encodes both nuclear and mitochondrial isoforms. J Biol Chem 1997, 272: 19072–19080.
Mosbaugh DW, Bennett SE. Uracil-excision repair. Prog Nucl Acid Res 1994; 48: 315–370.
Croteau DL, Bohr VA. Repair of oxidative damage to nuclear and mitochondrial DNA in mammalian cells. J Biol Chem 1997, 272: 25409–25412.
Sancar A. DNA excision repair. Ann Rev Biochem 1996; 65: 43–81.
Modrich P, Lahue R. Mismatch repair in replication fidelity, genetic recombination, and cancer biology. Annu Rev Biochem 1996; 65: 101–133.
Drummond JT, Li G-M, Longley MJ et al. Isolation of an hMSH2-p16o heterodimer that restores DNA mismatch repair to tumor cells. Science 1995; 268: 1909–1912.
Palombo F, Gallinari P, Iaccarino I et al. GTBP, a 16o-kilodalton protein essential for mismatch-binding activity in human cells. Science 1995; 268: 1912–1914.
Papadopoulos N, Nicolaides NC, Liu B et al. Mutations of GTBP in genetically unstable cells. Science 1995; 268: 1915–1917.
Prolla TA, Pang Q, Alani E et al. MLH1, PMS1, and MSH2 interactions during the initiation of DNA mismatch repair in yeast. Science 1994; 265: 1091–1093.
Reenan RAG, Kolodner RD. Isolation and characterization of two Saccharomyces cerevisiae genes encoding homologs of the bacterial HexA and MutS mismatch repair proteins. Genetics 1992; 132: 963–973.
Reenan RAG, Kolodner RD. Characterization of insertion mutations in the Saccaharomyces cerevisiae MSH1 and MSH2 genes: Evidence for separate mitochondrial and nuclear functions. Genetics 1992; 132: 975–985.
Chi N-W, Kolodner RD. Purification and characterization of MSH1, a yeast mitochondrial protein that binds to DNA mismatches. J Biol Chem 1994; 269: 29984–29992.
Rasmussen LJ, Samson L, Marinus MG. Dam-directed DNA mismatch repair. In: Nickoloff JA, Hoekstra MF, eds. DNA damage and repair: Biochemistry, genetics, and cell biology. 1997:chapter u.
Pont-Kingdon GA, Okada NA et al. A coral mitochondrial mutS gene. Nature 1995 375: 109–111.
Modrich P, Lahue R. Mismatch repair in replication fidelity, genetic recombination and cancer biology. Ann Rev Biochem 1996, 65: 101–133.
Papadopoulos N, Nicolaides NC et al. Mutations of a MutL homolog in hereditary colon cancer. Science 1994 263: 1635–1629.
Kaukonen JA, Amati P et al. An autosomal locus predisposing to multiple deletions of mitDNA on chromosome 3p. Am J Hum Genet 1996, 58: 763–769.
Waters R, Moustacchi E. The fate of ultraviolet-induced pyrimidine dimers in the mtDNA of Saccharomyces cerevisiae following various post-irradiation cells treatments. Biochim Biophys Acta 1974; 366: 241–250.
Prakash L. Repair of pyrimidine dimers in nuclear and mtDNA of yeast irradiated with low doses of ultraviolet light. J Mol Biol 1975; 98t781–795.
Anderson CTM, Friedberg EC. The presence of nuclear and mitochondrial uracilDNA glycosylase in extracts of human KB cells. Nucleic Acids Res 1980; 8: 875–888.
Chuen-cheh S, Wertelecki W, Driggers WJ, LeDoux SP, Wilson GL. Repair of mitochondrial DNA damage induced by bleomycin in human cells. Mut Res 1995; 337: 19–23.
Driggers WJ, LeDoux SP, Wilson GL. Repair of oxidative damage within the mitochondrial DNA of RINr 38 cells. J Biol Chem 1993; 268: 22042–22045.
Kang D, Nishida J-I, Iyama A et al. Intracellular localization of 8-oxo-dGTPase in human cells, with special reference to the role of the enzyme in mitochondria. J Biol Chem 1995; 270: 14659–14665.
LeDoux SP, Wilson GL, Beecham EJ et al. Repair of mitochondrial DNA after various types of DNA damage in Chinese hamster ovary cells. Carcinogenesis 1992; 13: 1967–1973.
LeDoux SP, Patton NJ, Avery LJ et al. Repair of N-methylpurines in the mitochondrial DNA of xeroderma pigmentosum complementation group D cells. Carcinogenesis 1993; 14: 913–917.
LeDoux SP, Wilson GL, Bohr VA. Mitochondrial DNA repair and cell injury. In: Jones DP, Lash LH, eds. Mitochondrial Dysfunction, Methods in Toxicology. Acad Press, 1993: 461–476.
Moustacchi E and Heude M. Mutagenesis and repair in yeast mtDNA. In: Molecular and cellular mechanisms of mutagenesis. Ed JF Lemontt and WM Generoso, pp 273–301. New Yprk: Plenum. 1982.
Pettepher CC, LeDoux SP, Bohr VA et al. Repair of alkali-labile sites within the mitochondrial DNA of RINr38 cells after exposure to the nitrosourea streptozotocin. J Biol Chem 1991; 266:3n3–3n7.
Pirsel M, Bohr VA. Methyl methanesulfonate adduct formation and repair in the DHFR gene and in mitochondrial DNA in hamster cells. Carcinogenesis 1993; 14: 2105–2108.
Sena EP, Revet B, Moustacchi E. In vivo homologous recombination intermediates of yeast mtDNA analyzed by electron microscopy. Mol Gen Genet 1986; 202: 421–428.
Snyderwine EG, Bohr VA. Gene-and strand-specific damage and repair in Chinese Hamster Ovary cells treated with 4-nitroquinoline 1-oxide, Cancer Res 1992; 52: 4183–4189.
Tomkinson AE, Bonk RT, Linn S. Mitochondrial endonuclease activities specific for apurinic/apyrimidinic sites in DNA from mouse cells. J Biol Chem 1988; 263: 12532–12537.
Myers KA, Saffhill R, O’Connor PJ. Repair of alkylated purines in the hepatic DNA of mitochondria and nuclei in the rat. Carcinogenesis 1988; 9: 285–292.
Bolden A, Pedrali NG, Weissbach A. DNA polymerase is a gamma-polymerase. J Biol Chem 1977; 252: 3351–3356.
Levin CJ, Zimmerman SB. A DNA ligase from mitochondria of rat liver. Biochem Biophys Res Commun 1976; 69: 514–520.
Ryoji M, Katayama H, Fusamae H et al. Repair of DNA damage in a mitochondrial lysate of Xenopus laevis oocytes. Nucleic Acids Res 1996; 24: 4057–4062.
Linn S. DNA repair in mitochondria: How is it limited? What is its function? In: Esser K, Martin GM, eds. Molecular Aspects of Aging. New York: John Wiley and Sons, 1995.
Foury F, Lahaye A. Cloning and sequencing of the PIF gene involved in repair and recombination of yeast mitochondrial DNA. EMBO J 1987; 6: 1441–1449.
Evans DH, Kolodner R. Effect of DNA structure and nucleotide sequence on Holliday junction resolution by the Saccharomyces cerevisiae endonuclease. J Mol Biol 1988; 201: 69–80.
Ezekiel UR, Zassenhaus HP. Localization of a cruciform cutting endonuclease to yeast mitochondria. Mol Gen Genet 1993; 240: 414–418.
Thyagarajan B, Padua RA, Campbell C. Mammalian mitochondria possess homologous DNA recombination activity. J Biol Chem 1996; 271: 27536–27543.
Bernstein H, Byerly HC, Hopf FA et al. Genetic damage, mutation and the evolution of sex. Science 1985; 2291277–1281.
Campbell A. Types of recombination: common problems and common strategies. Cold Spring Harbor Symp Quant Biol1984; 49: 839–844.
Cox MM. Relating biochemistry to biology. Bioessays 1993; 15: 617–673.
Roca A, Cox M. The RecA protein: structure and function. Crit Rev Biochem Mol Biol 1990; 25: 415–456.
Shinohara A, Ogawa H et al. Cloning of human, mouse, and fission yeast recombination genes homolgous to RAD51 and recA. Nature Genetics 1993, 4: 239–243.
Ogawa T, Shinohara A, Nabetani A et al. RecA-like recombination proteins in eukaryotes: functions and structures of RAD51 genes. Cold Spring Harb Symp Quant Biol 1993; 58: 567–576.
Cerutti H, Johnson AM, Boynton JE et al. Inhibition of chloroplast DNA recombination and repair by dominant negative mutants of Escherichia coli RecA. Mol Cell Biol 1995, 153003–3011.
Schon EA, Rizzuto R et al. A direct repeat is a hotspot for large scale deletion of human mitochondrial DNA. Science 1989, 244: 346–349.
Devereux J, Haeberli P, Smithies O. A comprehensive set of sequence analysis program for the VAX. Nucl Acids Res 1984, 12: 387.
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 1998 Springer-Verlag Berlin Heidelberg
About this chapter
Cite this chapter
Rasmussen, L.J., Singh, K.K. (1998). Genetic Integrity of the Mitochondrial Genome. In: Singh, K.K. (eds) Mitochondrial DNA Mutations in Aging, Disease and Cancer. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-662-12509-0_6
Download citation
DOI: https://doi.org/10.1007/978-3-662-12509-0_6
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-662-12511-3
Online ISBN: 978-3-662-12509-0
eBook Packages: Springer Book Archive