Skip to main content

Structure of the Gene 5 DNA Binding Protein from Bacteriophage fd and its DNA Binding Cleft

  • Chapter
Chemical Recognition in Biology

Part of the book series: Molecular Biology, Biochemistry and Biophysics ((MOLECULAR,volume 32))

Abstract

The gene 5 product of bacteriophage fd is a small DNA binding protein of 9,800 daltons containing 87 amino acids (Alberts et al. 1972; Oey and Knippers 1972). Its primary physiological role is the stabilization and protection of the single-strand DNA daughter virions from duplex formation following replication in the host (Salstrom and Pratt 1971). Because of the highly cooperative nature of its binding to DNA, it has the capacity to unwind or destabilize native DNA. Under low ionic strength conditions in vitro, it will melt double-stranded homopolymers and will reduce the melting temperature of native double-strand calf thymus DNA by 40°C (Salstrom and Pratt 1971).

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

eBook
USD 16.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Alberts B, Frey L, Delius H (1972) Isolation and characterization of gene 5 protein of filamentous bacterial viruses. J Mol Biol 68: 139–152

    Article  PubMed  CAS  Google Scholar 

  • Anderson RA, Nakashima Y, Coleman JE (1975) Chemical modifications of functional residues of fd gene 5 DNA-binding protein. Biochemistry 14: 907–917

    Article  PubMed  CAS  Google Scholar 

  • Cavalieri S, Goldthwait DA, Neet K (1976) The isolation of a dimer of gene 9 protein of bacteriophage fd. J Mol Biol 102: 713–722

    Article  PubMed  CAS  Google Scholar 

  • Coleman JE, Armitage IM (1980) Biochemistry (in press)

    Google Scholar 

  • Coleman JE, Anderson RA, Ratcliffe RG, Armitage IM (1976) Structure of gene 5 protein-oligo-dexynucleotide complexes as determined by H, F and P nuclear magnetic resonance. Biochemistry 15: 5419–5430

    Article  PubMed  CAS  Google Scholar 

  • Cuypers T, van der Oudera FJ, DeJong WW (1974) The amino acid sequence of gene 5 protein of bacteriophage M 13. Biochem Biophys Res Commun 59: 557–563

    Article  PubMed  CAS  Google Scholar 

  • Day LA (1973) Circular dichroism and ultra-violet absorption of a deoyribonucleic acid binding protein of filamentous bacteriophage. Biochemistry 12: 5329–5339

    Article  PubMed  CAS  Google Scholar 

  • Dunker AK, Anderson EA (1975) The binding of the fd gene-5 protein to single-stranded nucleic acid. Biochim Biophys Acta 402: 31–34

    PubMed  CAS  Google Scholar 

  • McPherson A, Molineux I, Rich A (1976) Crystalization of a DNA unwinding protein: Preliminary X-ray analysis of fd bacteriophage gene-5 product. J Mol Biol 106: 1077–1081

    Article  PubMed  CAS  Google Scholar 

  • McPherson A, Jurnak FA, Wang AH-J, Molineux I, Rich A (1979) Structure at 2.3 Åresolution of the gene 5 product of bacteriophage fd: A DNA unwinding protein. J Mol Biol 134: 379–400

    Article  PubMed  CAS  Google Scholar 

  • Nakashima Y, Dunker AK, Marion DA, Konigsberg W (1974) The amino acid sequence of a DNA binding protein, the gene 5 product of fd filamentous bacteriophage. FEBS Lett 40: 290–292

    Article  PubMed  CAS  Google Scholar 

  • Oey JL, Knippers R (1972) Properties of the isolated gene-5 protein of bacteriophage fd. J Mol Biol 68: 125–128

    Article  PubMed  CAS  Google Scholar 

  • Pratt D, Laws P, Griffity J (1974) Complex of bacteriophage M 13 single-stranded DNA and gene 5 protein. J Mol Biol 82: 425–439

    Article  PubMed  CAS  Google Scholar 

  • Pretorius HT, Klein M, Day LA (1975) Gene V protein of fd bacteriophage. Dinner formation and the role of tyrosyl groups in DNA binding. J Biol Chem 250: 9262–9269

    PubMed  CAS  Google Scholar 

  • Salstrom JS, Pratt D (1971) Role of coliphage M 13 gene 5 in single-stranded DNA production. J Mol Biol 61: 489–501

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1980 Springer-Verlag Berlin · Heidelberg

About this chapter

Cite this chapter

McPherson, A., Wang, A., Jurnak, F., Molineux, I., Rich, A. (1980). Structure of the Gene 5 DNA Binding Protein from Bacteriophage fd and its DNA Binding Cleft. In: Chapeville, F., Haenni, AL. (eds) Chemical Recognition in Biology. Molecular Biology, Biochemistry and Biophysics, vol 32. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-81503-4_19

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-81503-4_19

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-81505-8

  • Online ISBN: 978-3-642-81503-4

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics