Abstract
The GridSpace2 environment, developed in the scope of the PL-Grid Polish National Grid Initiative, constitutes a comprehensive platform which supports e-science applications throughout their entire lifecycle. Application development may involve multiple phases, including writing, prototyping, testing and composing the application. Once the application attains maturity it becomes operable and capable of being executed, although it may still be subject to further development – including actions such as sharing with collaborating researchers or making results publicly available with the use of dedicated publishing interfaces. This paper describes each of these phases in detail, showing how the GridSpace2 platform can assist the developers and publishers of computational experiments.
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References
List of scientific publications associated with GridSpace, http://dice.cyfronet.pl/publications/
Ciepiela, E., Harężlak, D., Kocot, J., Bartyński, T., Kasztelnik, M., Nowakowski, P., Gubała, T., Malawski, M., Bubak, M.: Exploratory Programming in the Virtual Laboratory. In: Proceedings of the International Multiconference on Computer Science and Information Technology, Wisla, Poland, pp. 621–628 (2010)
GridSpace2 technology homepage, http://dice.cyfronet.pl/gridspace
The PL-Grid project, http://www.plgrid.pl/en
The Mapper project, http://mapper-project.eu
Triana homepage, http://www.trianacode.org
Kepler project homepage, http://kepler-project.org
Taverna homepage, http://taverna.sourceforge.net
Gunarathne, T., Herath, C., Chinthaka, E., Marru, S.: Experience with Adapting a WS-BPEL Runtime for e-Science Workflows. In: Proceedings of the 5th Grid Computing Environments Workshop, pp. 1–10. ACM (2009)
The ViroLab Project, http://virolab.cyfronet.pl
Rycerz, K., Bubak, M., Sloot, P.M.A., Getov, V.: Problem-Solving Environment for Distributed Interactive Simulations. In: Gorlatch, S., Bubak, M., Priol, T. (eds.) Achievements in European Research on Grid Systems, CoreGRID Integration Workshop 2006 (Selected Papers), pp. 55–66. Springer, Heidelberg (2008) ISBN-13: 978-0-387-72811-7
Gil, Y., Deelman, E., Ellisman, M., Fahringer, T., Fox, G., Gannon, D., Goble, C., Livny, M., Moreau, L., Myers, J.: Examining the Challenges of Scientific Workflows. IEEE Computer 40(12), 24–32 (2007)
Allen, G., Löffler, F., Radke, T., Schnetter, E., Seidel, E.: Integrating Web 2.0 Technologies with Scientific Simulation Codes for Real-time Collaboration. Cluster, 1–10 (2009)
Droegemeier, K.K., et al.: Service-oriented Environments in Research and Education for Dynamically Interacting with Mesoscale Weather. IEEE Computing in Science and Engineering (2005)
Stevens, R., et al.: Exploring Williams-Beuren Syndrome using MyGrid. Bioinformatics 1(20), 303–310 (2004)
The myExperiment, http://myexperiment.org
Altintas, I., Jaeger, E., Lin, K., Ludaescher, B., Memon, A.: A Web Service Composition and Deployment Framework for Scientific Workflows. In: ICWS, p. 814 (2004)
The Elsevier Executable Paper Grand Challenge, http://www.executablepapers.com
The SCiX project, http://www.scix.net
The PEER project, http://www.peerproject.eu
The LiquidPub project, http://liquidpub.org
The Concept Web Alliance homepage, http://conceptweblog.wordpress.com/declaration
Attwood, T.K., Kell, D.B., McDermott, P., Marsh, J., Pettifer, S.R., Thorne, D.: Utopia Documents: Linking Scholarly Literature with Research Data. In: Proceedings of 9th European Conference on Computational Biology, Ghent, Belgium (September 2010)
The Worldwide Protein Data Bank homepage, http://www.wwpdb.org
Gubała, T., Prymula, K., Nowakowski, P., Bubak, M.: Semantic Integration for Model-based Life Science Applications. Paper submitted to IEEE Internet Computing; evaluation pending
Jadczyk, T., Bubak, M., Roterman, I.: Is the “Fuzzy Oil Drop” Model of General Character? Poster presentation at KUKDM in Zakopane, Poland (2011)
Ciepiela, E., Zaraska, L., Sulka, G.D.: Implementation of Algorithms of Quantitative Analysis of the Grain Morphology in Self-Assembled Hexagonal Lattices According to Hillebrand Method, GridSpace2/Collage executable paper http://collage.cyfronet.pl/hillebrand-grains/
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Ciepiela, E. et al. (2012). Managing Entire Lifecycles of e-Science Applications in the GridSpace2 Virtual Laboratory – From Motivation through Idea to Operable Web-Accessible Environment Built on Top of PL-Grid e-Infrastructure. In: Bubak, M., Szepieniec, T., Wiatr, K. (eds) Building a National Distributed e-Infrastructure–PL-Grid. Lecture Notes in Computer Science, vol 7136. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-28267-6_18
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DOI: https://doi.org/10.1007/978-3-642-28267-6_18
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