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Agersborg, A., R. Dahl, and I. Martinez. 1997. Sample preparation and DNA extraction procedures for polymerase chain reaction identification of Listeria monocytogenes in seafoods. Int. J. Food Microbiol. 35:275–280.
Al-Soud, W.A. and P. Radstrom. 1998. Capacity of nine thermostable DNA polymerases to mediate DNA amplification in the presence of PCR-inhibiting samples. Appl. Environ. Microbiol. 64:3748–3753.
Al-Soud, W.A. and P. Radstrom. 2000. Effects of amplification facilitators on diagnostic PCR in the presence of blood, feces, and meat. J. Clin. Microbiol. 38:4463–4470.
Bhaduri, S. and B. Cottrell. 2001. Sample preparation methods for PCR detection of Escherichia coli O157:H7, Salmonella typhimurium, and Listeria monocytogenes on beef chuck shoulder using a single enrichment medium. Mol. Cell. Probes 15:267–274
Chen, S., A. Yee, M. Griffiths, C. Larkin, C.T. Yamashiro, R. Behari, C. Paszko-Kolva, K. Rahn, and S.A. De Grandis. 1997. The evaluation of a fluorogenic polymerase chain reaction assay for the detection of Salmonella species in food commodities. Int. J. Food Microbiol. 35:239–250.
De Medici, D., L. Croci, E. Delibato, S. Di Pasquale, E. Filetici, and L. Toti. 2003. Evaluation of DNA extraction methods for use in combination with SYBR Green I Real-Time PCR to detect Salmonella enterica Serotype Enteritidis in poultry. Appl. Environ. Microbiol. 69:3456–3461.
Formiga-Cruz, M., G. Tofiño-Quesada, S. Bofill-Mas, D.N. Lees, K. Henshilwood, A.K. Allard, A.-C. Conden-Hansson, B.E. Hernroth, A. Vantarakis, A. Tsibouxi, M. Papapetropoulou, M.D. Furones, and R. Girones. 2002. Distribution of human virus contamination in shellfish from different growing areas in Greece, Spain, Sweden, and the United Kingdom Appl. Environ. Microbiol. 68:5990–5998.
Hudson, J.A., R.J. Lake, M.G. Savill, P. Scholes and R.E. McCormick. 2001. Rapid detection of Listeria monocytogenes in ham samples using immunomagnetic separation followed by polymerase chain reaction. J. Appl. Microbiol. 90:614–621.
Kainz, P. 2000. The PCR plateau phase—Towards an understanding of its limitations. Biochimica et Biophysica Acta 1494:23–27.
Kim, C.H., M. Khan, D.E. Morin, W.L. Hurley, D.N. Tripathy, M. Kehrli Jr., A.O. Oluoch, and I. Kakoma. 2001. Optimization of the PCR for detection of Staphylococcus aureus nuc gene in bovine milk. J. Dairy Sci. 84:74–83.
Kim, S., R.G. Labbe, and S. Ryu. 2000. Inhibitory effects of collagen on the PCR for detection of Clostridium perfringens. Appl. Environ. Microbiol. 66:1213–1215.
Koo, K. and L.A. Jaykus. 2003. Detection of Listeria monocytogenes from a model food by fluorescence resonance energy transfer-based PCR with an asymmetric fluorogenic probe set. Appl. Environ. Microbiol. 69:1082–1088.
Lantz, P.G., R. Knutsson, Y. Blixt, W.A. Al-Soud, E. Borch, and P. Radstrom. 1998. Detection of pathogenic Yersinia enterocolitica in enrichment media and pork by a multiplex PCR: A study of sample preparation and PCR-inhibitory components. Int. J. Food Microbiol. 45:93–105.
Lantz, P.G., W.A. Al-Soud, Ri. Knutsson, B. Hahn-Hagerdal, and P. Radstrom. 2000. Biotechnical use of polymerase chain reaction for microbiological analysis of biological samples. Biotechnol. Ann. Rev. 5:130.
Makino, S.I., Y. Okada, and T. Maruyama. 1995. A new method for direct detection of Listeria monocytogenes from foods by PCR. Appl. Environ. Microbiol. 61:3745–3747.
McKillip, J.L., L.A. Jaykus, and M.A. Drake. 2000. A comparison of methods for the detection of Escherichia coli O157:H7 from artificially contaminated dairy products using PCR. J. Appl. Microbiol. 89:49–55
Nishida, T., H. Kimura, M. Saitoh, M. Shinohara, M. Kato, S. Fukuda, T. Munemura, T. Mikami, A. Kawamoto, M. Akiyama, Y. Kato, K. Nishi, K. Kozawa, and O. Nishio. 2003. Detection, quantitation, and phylogenetic analysis of Noroviruses in Japanese oysters. Appl. Environ. Microbiol. 69:5782–5786.
Orlandi, P.A., and K.A. Lample. 2000. Extraction-free, filter-based template preparation for rapid and sensitive PCR detection of pathogenic parasitic protozoa. J. Clin. Microbiol. 38:2271–2277.
Radstrom, P., R. Knutsson, P. Wolffs, M. Lovenklev, and C. Lofstrom. 2004. Pre-PCR processing strategies to generate PCR-compatible samples. Mol. Biotechnol. 26:133–146.
Ramesh, A., B.P. Padmapriya, A. Chandrashekar, and M.C. Varadaraj. 2002. Application of a convenient DNA extraction method and multiplex PCR for the direct detection of Staphylococcus aureus and Yersinia enterocolitica in milk samples Mol. Cell. Probes 16:307–314.
Sair, A.I., D.H. D’Souza, C.L. Moe, and L.A. Jaykus. 2002. Improved detection of human enteric viruses in foods by RT-PCR. J. Vir. Meth. 100:57–69.
Schwab, K.J., F.H. Neill, R.L. Fankhauser, N.A. Daniels, S.S. Monroe, D.A. Bergmire-Sweat, M.K. Estes, and R.L. Atmari. 2000. Development of methods to detect “Norwalk-Like Viruses” (NLVs) and Hepatitis A Virus in delicatessen foods: Application to a foodborne NLV outbreak. Appl. Environ. Microbiol. 66:213–218.
Simon, K.C., D.I. Gray, and N. Coo. 1996. DNA extraction and PCR Methods for the detection of Listeria monocytogenes in cold-smoked salmon. Appl. Environ. Microbiol. 62:822–824.
Uyttendaele, M., J. Debevere, and R. Lindqvist. 1999. Evaluation of buoyant density centrifugation as a sample preparation method for NASBA-ELGA detection of Campylobacter jejuni in foods. Food Microbiol. 16:575–582.
Uyttendaele, M., S. van Boxstael, and J. Debevere. 1999. PCR assay for detection of the E. coli O157:H7 eae-gene and effect of the sample preparation method on PCR detection of heat-killed E. coli O157:H7 in ground beef. Int. J. Food Microbiol. 52:85–95.
Vishnubhatla, A., D.Y.C. Fung, R.D. Oberst, M.P. Hays, T.G. Nagaraja, and S.J.A. Flood. 2000. Rapid 5′ nuclease (TaqMan) assay for detection of virulent strains of Yersinia enterocolitica. Appl. Environ. Microbiol. 66:4131–4135.
Wang, H., J.M. Farber, N. Malik, and G. Sanders. 1999. Improved PCR detection of Campylobacter jejuni from chicken rinses by a simple sample preparation procedure Int. J. Food Microbiol. 52:39–45.
Wilson, I.G. 1997. Minireview: Inhibition and facilitation of nucleic acid amplification. Appl. Environ. Microbiol. 63:3741–3751.
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Lee, M.D., Fairchild, A. (2006). Sample Preparation for PCR. In: Maurer, J. (eds) PCR Methods in Foods. Food Microbiology and Food Safety. Springer, Boston, MA . https://doi.org/10.1007/0-387-31702-3_3
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DOI: https://doi.org/10.1007/0-387-31702-3_3
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