Modeling influenza epidemics and pandemics: insights into the future of swine flu (H1N1)
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Here we present a review of the literature of influenza modeling studies, and discuss how these models can provide insights into the future of the currently circulating novel strain of influenza A (H1N1), formerly known as swine flu. We discuss how the feasibility of controlling an epidemic critically depends on the value of the Basic Reproduction Number (R0). The R0 for novel influenza A (H1N1) has recently been estimated to be between 1.4 and 1.6. This value is below values of R0 estimated for the 1918–1919 pandemic strain (mean R0~2: range 1.4 to 2.8) and is comparable to R0 values estimated for seasonal strains of influenza (mean R0 1.3: range 0.9 to 2.1). By reviewing results from previous modeling studies we conclude it is theoretically possible that a pandemic of H1N1 could be contained. However it may not be feasible, even in resource-rich countries, to achieve the necessary levels of vaccination and treatment for control. As a recent modeling study has shown, a global cooperative strategy will be essential in order to control a pandemic. This strategy will require resource-rich countries to share their vaccines and antivirals with resource-constrained and resource-poor countries. We conclude our review by discussing the necessity of developing new biologically complex models. We suggest that these models should simultaneously track the transmission dynamics of multiple strains of influenza in bird, pig and human populations. Such models could be critical for identifying effective new interventions, and informing pandemic preparedness planning. Finally, we show that by modeling cross-species transmission it may be possible to predict the emergence of pandemic strains of influenza.
KeywordsInfluenza Avian Influenza Basic Reproduction Number Influenza Epidemic Biomedical Intervention
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Mathematical models have been used to understand the spatial-temporal transmission dynamics of influenza. They have also been used as health policy tools to predict the effect of public health interventions on mitigating future epidemics or pandemics. The potential epidemiological impact of both behavioral and biomedical interventions has been investigated. Here we present a review of the literature of influenza modeling studies and discuss how results from these studies can provide insights into the future of the currently circulating strain of novel influenza A (H1N1). This strain was formerly known as swine flu .
A basic epidemiological model for Influenza
Modeling the past
Modeling studies have provided interesting insights into the severity of past influenza epidemics and pandemics [11, 12, 13, 14, 15]. For example, Chowell and colleagues have compared the severity of seasonal influenza epidemics in the US, France, and Australia over the past three decades by estimating country-specific values of R0 . Their results show the severity of the epidemics in the three countries is similar every year, but there is considerable year to year variability (mean R0 is 1.3; range is 0.9 to 2.1) . Many modeling studies have investigated the three historical pandemics of the 20th century: the Spanish Flu 1918–1919 (H1N1), Asian Flu 1957–1958 (H2N2), and Hong Kong Flu 1968 (H3N2) [7, 12, 13, 14, 15, 16, 17]. Mills et al., using pneumonia and influenza mortality data collected in 45 cities in the USA, estimated that the value of R0 for the 1918–1919 pandemic was between 2 and 3 . Ferguson et al. reached similar conclusions; they estimated that an R0~2 with a range of 1.4 to 2.8 . Modeling has also been applied to assess the effect that interventions may have had in mitigating the 1918–1919 pandemic [12, 17]. Bootsma et al.  estimated that public health measures, based on social distancing, reduced mortality by 10 to 30% in cities in the US. They concluded that the timing of public health interventions strongly influenced the magnitude of the autumn wave of influenza . Another study used data on daily mobility patterns of fur traders traveling between settlements, and modeled the effectiveness of voluntary quarantine on the spread of influenza in central Canada during the 1918–1919 pandemic . The authors found that, as mobility rates were low, only extremely high rates of quarantine would have significantly altered the pattern of geographic spread .
Designing biomedical and behavioral public health interventions
The effect of behavioral interventions such as closing schools, quarantining infected individuals or imposing travel restrictions have been modeled [17, 18, 20, 21, 22, 23]. It has been shown that behavioral interventions that increase social distancing, such as prolonged school closures, could reduce the cumulative number of influenza cases by 13 to 17% . Studies have been useful for comparing interventions. For example, Ferguson et al. have determined that household quarantine could be more effective than closing schools . The potential effectiveness of biomedical interventions (for example, vaccination, prophylactic treatment with antivirals, and therapeutic treatment) have been modeled [19, 24, 25]. Models have also been used to compare the relative effectiveness of prophylaxis versus treatment strategies , to assess the potential problem of antiviral resistance [26, 27, 28, 29, 30, 31] and to identify the optimal strategy for allocating vaccines . Most studies have evaluated the potential effectiveness of a combination of behavioral and biomedical interventions [18, 22, 23, 32]. Some studies have shown that certain interventions are unlikely to be effective. For example, Cooper et al., Ferguson et al., and Epstein et al. have found that even extensive air travel restrictions would be unlikely to delay spread of a pandemic by more than a few weeks [18, 21, 33]. However, Colizza et al. have shown that a pandemic could be effectively contained if there is a global cooperative strategy in place, whereby one country donates some of their stockpiled antivirals to other countries in need . Not surprisingly, all of the studies have shown it is essential to implement interventions as quickly and as early in the epidemic as possible.
Feasibility of biomedical and behavioral public health interventions
Although many studies have identified potentially effective public health interventions, they have not assessed their feasibility. For example, studies evaluating mass vaccination strategies have found a very high coverage is needed to prevent epidemics. However, in the 'real-world' where vaccination is voluntary, high vaccination coverage is rarely achieved. Recently Vardavas et al. and Galvani et al. have investigated the effect of human behavior on determining vaccination coverage [35, 36]. Vardavas et al. constructed a dynamic individual-level model of human cognition and behavior; individuals in this model are characterized by two biological attributes (memory and adaptability) they use when making vaccination decisions . Individuals are allowed to decide, on the basis of self-interest, whether to vaccinate or not each year. In addition, individuals are given an option of changing their vaccination behavior each year. Consequently, individual-level adaptive behavior influences influenza epidemiology, and conversely, influenza epidemiology influences individual-level vaccination decisions. Galvani et al. took a different approach and developed a static model based on Game Theory . Both Vardavas et al. and Galvani et al. showed that coverage levels high enough to achieve herd immunity could only be attained by implementing incentive-based vaccination programs [35, 36]. However, Vardavas et al. also showed that certain of these programs could, paradoxically, increase epidemic severity . They therefore recommend incentive-based vaccination programs will need to be very carefully designed . The studies of Vardavas et al. and Galvani et al. illustrate that models can be used to identify the strength of the interventions that are necessary to control an epidemic or pandemic, but the goals of the control strategy may not be attainable.
The feasibility of controlling an epidemic will critically depend on the value of the R0. The more severe the epidemic (i.e., the greater the value of R0) the more intensive the interventions must be to significantly reduce the number of infections and deaths. Not surprisingly, the levels of vaccination or treatment necessary for control are lower if interventions are targeted. For example, Longini et al. modeled the effects of age-specific targeting strategies and found vaccinating 80% of children (less than 19 years old) would be almost as effective as vaccinating 80% of the entire population . Longini et al. also found that targeting antiviral prophylaxis (that is, providing close contacts of suspected cases with antivirals) could be extremely effective in controlling epidemics . However even using a targeted approach they determined it would be necessary for 80% of exposed individuals to be quickly identified, and for them to take antivirals for up to 8 weeks in order to mitigate a severe epidemic .
Many studies have evaluated the level of interventions needed to contain epidemics of varying severity. For example, Colizza et al. simulated a hypothetical influenza pandemic that was capable of spreading through 3,100 urban areas in 220 countries . When R0was less than 1.9 they found the epidemic could be significantly reduced if there were enough antivirals to treat ~2–6% of the population. However, when they modeled a very severe epidemic (R0 of 2.3) their simulations showed, that even if ~20% of the population were treated with antivirals, 30–50% of the population would become infected . Longini et al. conducted a similar type of analysis, but assessed the potential for interventions to control an emerging influenza epidemic in rural South East Asia . They determined that targeted antiviral prophylaxis could contain a moderately severe epidemic (R0 < 1.6) if 100,000 to 1 million courses of antivirals were available. A combination of targeted antiviral prophylaxis and pre-epidemic vaccination would be necessary to contain a severe epidemic (R0~2.1). Finally, they calculated that a combination of high levels of targeted antiviral prophylaxis, pre-vaccination, and quarantine could contain even a very severe epidemic (R0~2.4). Ferguson et al. also modeled an emerging influenza epidemic in South East Asia . Their results show geographically targeted prophylaxis, reinforced with behavioral interventions aimed at increasing social distancing, would be necessary to contain an epidemic with an R0 of ~1.6. They calculated that 3 million courses of antivirals would be needed for their proposed control strategy.
The results from all of the modeling studies are in agreement; very high vaccination and treatment levels will be necessary to contain even a moderately severe pandemic. It will be difficult, but perhaps possible, to achieve these goals for interventions in resource-rich countries. However, clearly resource-constrained and resource-poor countries will be unable to achieve these goals unless they are given very large supplies of vaccines and antivirals by resource-rich countries.
Modeling Influenza A (H1N1): emergence and control
Influenza is a zoonotic disease that can infect a variety of host species. Strains can be transmitted between species, and new strains can emerge through co-infection and genetic recombination in intermediate hosts. Wild ducks and wading birds are considered to be a reservoir for influenza because they can carry all subtypes, and the virus is avirulent to its avian hosts. Avian viruses are also found in other birds such as domestic ducks and poultry. New strains of avian influenza have recently emerged in South East Asia and have infected humans. These strains are not transmissible from human to human; however, they are highly virulent in humans and have killed approximately 70% of infected individuals . Besides humans, avian influenza viruses infect a variety of other mammals including seals, whales, and pigs . Considerable attention has been focused on avian influenza as it has been expected that pandemic strains would arise from transmission from birds to humans. However, surprisingly, influenza A (H1N1) emerged through cross-species transmission from pigs to humans and has been shown to have arisen due to recombination between swine, avian, and human strains.
The first modeling paper on influenza A (H1N1) has recently been published . By fitting an SIR model to initial outbreak data from La Gloria in Mexico Fraser et al. estimated the R0 for this novel strain to be between 1.4 to 1.6 . This value is on the lower end of previous values for the 1918–1919 strain (R0 mean ~2: range 1.4 to 2.8 ) and is comparable to R0 values estimated for seasonal strains of influenza (R0 mean 1.3: range 0.9 to 2.1 ). (It is important to note that there is considerable overlap in the estimates of R0 for seasonal and pandemic strains.) The public health measures that were widely applied in Mexico appear to have been successful in mitigating the outbreak of H1N1; this observation appears to corroborate results from earlier modeling studies  that show behavioral interventions can be very effective if R0 is below two. The R0 results of Fraser et al. from La Gloria (R0 for H1N1 lies between 1.4 and 1.6) indicate that it is theoretically possible to control this pandemic. However, as we have discussed previously, an effective control strategy that has been identified by modeling may not be a feasible control strategy. If a vaccine is available by the autumn there is likely to be high uptake, due to the publicity surrounding the initial outbreak of this strain. If the initial estimates of the R0 for H1N1 are correct then this high vaccination coverage could have a significant effective on mitigating the pandemic, at least in resource-rich countries. However, H1N1 has now been disseminated worldwide through air travel. Consequently, it will be necessary for resource-rich countries to share vaccines and antivirals in order to mitigate a pandemic. Such a global cooperative strategy will be essential to prevent resource-constrained and resource-poor countries suffering from a significantly disproportionate burden of morbidity and mortality.
To the best of our knowledge there are only two published studies that have modeled interventions for influenza strains that arise due to cross-species transmission. Iwami et al. modeled epidemics that result as a consequence of cross-species (that is, avian-human) transmission . Their results show the potential effectiveness of quarantine as a control strategy, and also the importance of simultaneously controlling influenza in the avian population . Saenz et al. modeled the potential effect of pigs (or poultry) on amplifying the number of infections that would arise as the result of a new strain of influenza . They modeled the transmission dynamics in a confined feeding operation (CAFO) as a result of interactions between three groups: CAFO species (either swine or poultry), CAFO workers, and the rest of the local population. Their results show that amplification would be prevented if at least 50% of the CAFO workers could be successfully vaccinated . They suggest that a vaccination strategy targeted at CAFO workers could be an effective strategy for containing a pandemic. Notably, the interventions suggested by Iwami et al.  and Saenz et al.  are interventions that cannot be identified unless cross-transmission is included in the model.
Summary and conclusion
As we have discussed in this review, mathematical models have been extremely useful in increasing our understanding of the spatial-temporal transmission dynamics of influenza. They have also provided assistance in evaluating the potential effectiveness of public health interventions in controlling pandemics of varying severity, where severity has been defined by the value of R0. However, we have stressed that, although many theoretical interventions have been identified they may not be feasible. Furthermore, we have argued that pandemic control will only be attainable with a global cooperative strategy. Our review has shown that current models may not be useful in identifying effective interventions for epidemics generated by strains, such as influenza A (H1N1), that emerge due to recombination of species-specific strains and subsequent cross-species transmission. Therefore, we recommend that more biologically complex models need to be developed. Analysis of such models could assist in identifying interventions that would be effective in reducing the probability of cross-species transmission and in mitigating pandemics driven by multi-species transmission. Results from these new policy models could provide critical insights for informing pandemic preparedness planning.
We gratefully acknowledge the National Institutes of Health/National Institute of Allergy and Infectious Diseases (R01 AI041935) (BGW, BJC and SB) and the John Simon Guggenheim Foundation (SB) for financial support. We thank Meagan Barrett, Justin Okano, and Tim Pylko for useful discussions.
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