Ligand-specific sequential regulation of transcription factors for differentiation of MCF-7 cells
Sharing a common ErbB/HER receptor signaling pathway, heregulin (HRG) induces differentiation of MCF-7 human breast cancer cells while epidermal growth factor (EGF) elicits proliferation. Although cell fates resulting from action of the aforementioned ligands completely different, the respective gene expression profiles in early transcription are qualitatively similar, suggesting that gene expression during late transcription, but not early transcription, may reflect ligand specificity. In this study, based on both the data from time-course quantitative real-time PCR on over 2,000 human transcription factors and microarray of all human genes, we identified a series of transcription factors which may control HRG-specific late transcription in MCF-7 cells.
We predicted that four transcription factors including EGR4, FRA-1, FHL2, and DIPA should have responsibility of regulation in MCF-7 cell differentiation. Validation analysis suggested that one member of the activator protein 1 (AP-1) family, FOSL-1 (FRA-1 gene), appeared immediately following c-FOS expression, might be responsible for expression of transcription factor FHL2 through activation of the AP-1 complex. Furthermore, RNAi gene silencing of FOSL-1 and FHL2 resulted in increase of extracellular signal-regulated kinase (ERK) phosphorylation of which duration was sustained by HRG stimulation.
Our analysis indicated that a time-dependent transcriptional regulatory network including c-FOS, FRA-1, and FHL2 is vital in controlling the ERK signaling pathway through a negative feedback loop for MCF-7 cell differentiation.
KeywordsEpidermal Growth Factor DIPA Immediate Early Gene Late Transcription Human Transcription Factor
The activation, duration and subsequent inactivation of the extracellular signal-regulated kinase (ERK) signaling pathway triggers the induction of appropriate changes required for the determination of cell fate. Although many growth factors show remarkably similar profiles in terms of immediate early gene (IEG) mRNA expression in various cell lines [1, 2, 3, 4, 5, 6, 7, 8], the biological outcome in response to these factors can vary. In fibroblasts, sustained ERK activation induced by platelet derived growth factor (PDGF) results in S-phase entry, unlike the case following transient activation by epidermal growth factor (EGF) [9, 10, 11, 12]. c-FOS is a representative IEG which is expressed within minutes following stimulation with growth factor independent from duration of the upstream signals. However, the protein expression level of c-FOS is post-transcriptionally regulated by ERK activation kinetics, where transient ERK signals induced by EGF resulted in little induction of c-FOS, whereas sustained ERK activation by PDGF induced markedly higher amounts of the same protein [13, 14]. Thus, the IEG product c-FOS can act as a molecular sensor for upstream ERK signals that leads cells towards particular paths such as proliferation, transformation or differentiation [13, 14, 15].
c-FOS is a member of the activator protein 1 (AP-1) transcription factor group that consist of FOS family proteins (c-FOS, FOSB, FRA-1/FOSL-1 and FRA-2/FOSL-2) [16, 17, 18, 19, 20] and JUN family proteins (c-JUN, JUNB and JUND) [21, 22, 23]. The AP-1 complex is formed by homo- and heterodimerization of JUN, FOS and several CREB/ATF family transcription factors, and mediates a wide range of biological effects related to cell growth, apoptosis and differentiation. c-FOS possesses the FXFP consensus motif, an ERK binding site, referred to as a DEF domain, which plays an important role as a sensor for ERK activity in cell fate decision [13, 15, 24]. In NIH 3T3 cells, mutation of the c-FOS DEF domain significantly reduced AP-1 activity and inhibited the transforming activity associated with wild-type c-FOS , suggesting that AP-1 transcription factor contains a DEF domain like c-FOS and that sustained ERK signals largely contribute to the regulation of cellular phenotypes.
We previously described that heregulin (HRG) induced sustained signal activity in MCF-7 breast cancer cells which triggered an irreversible cell phenotype change to differentiation (accumulation of lipid droplets within the cells), while EGF could only elicit transient signal activity and cell proliferation . Notwithstanding differences in phenotype induction, EGF and HRG induced qualitatively similar early transcription profiles independent of the presence or absence of prolonged ERK signal activity, resulted in all-or-none induction of c-FOS protein . Therefore, we assumed that the induction of different cell fates would eventually be accompanied by differences in the later transcribed genes after appearance of c-FOS. Ultimately, early quantitative differences in gene expression might be followed by qualitative differences during a series of transcriptional events. Therefore, in the current study we set out to identify phenotype-specific genes following long-term exposure to growth factors using time-course large-scale gene expression and to validate the function of the targeted genes. Expression analysis was first analyzed by quantitative real-time PCR (qRT-PCR) aimed at identifying core regulatory transcription factors. The results showed that ligand-specific transcription factors showing distinct expression are all induced by HRG but not by EGF.
Experimental validation was performed in an effort to confirm the late-transcriptional regulation of those transcription factors, c-FOS, FRA-1 and FHL2. Our results suggested that a time-dependent transcriptional regulatory network and associated control of the upstream signal activity by transcriptional feedback facilitate the entry of cells into an irreversible state.
The MCF-7 cell line was maintained in DMEM medium (Gibco BRL, Githersburg, MD) supplemented with 10% fetal bovine serum. Prior to growth factor treatment, cells were serum-starved for 16-24 hours, and then either EGF (PeproTech House, London, England) or HRG-β 176-246 (R&D Systems, Inc., Minneapolis, MN) was added. Cells were incubated with growth factor for the indicated time-period, washed three times with phosphate buffered saline (PBS), and lysed with Bio-Plex lysis buffer (Bio-Rad Laboratories, Hercules, CA).
qRT-PCR for screening of phenotype-specific transcriptional factors
where xt, EGFand xt, HRGrepresent qRT-PCR-based expression levels of gene x after t hours administration of EGF and HRG, respectively. Those genes which displayed maximum expression levels of less than 300 were omitted prior to the index value calculation. The distribution of I was approximated by a normal distribution with mean and standard deviation values of -0.1 and 0.7, respectively. Those genes with I values greater than 3.0 were extracted as differentially expressed genes and their expression pattern was confirmed by GeneChip-based expression data analysis.
Total RNA was isolated using TRIzol reagent (Invitrogen) and then purified using the QIAGEN RNeasy Mini kit. RNA quality was assessed using a Bioanalyzer (Agilent Technologies, Santa Clara, CA). First- and second-strand cDNA synthesis, biotin-labeled cRNA synthesis, fragmentation of cRNA and hybridization reactions were performed using a one cycle cDNA synthesis kit (Affymetrix, Santa Clara, CA). GeneChip (Affymetrix U133A 2.0 chip) experiments were carried out according to the manufacturer's protocol. Scanned images were processed using GeneChip Operating Software (GCOS) to determine the signal intensity of probe sets. Scaling was performed using the Single-Array Expression Analysis function in GCOS and the target value was set to 500. Microarray data used in this study was submitted to Gene Expression Omnibus database (GSE13009).
For each of the four transcription factors selected from the qRT-PCR results and confirmed by the microarray data, genes showing an HRG-induced expression pattern were correlated with these transcription factors (correlation coefficient ≥0.85) and those that showed higher expression with HRG than with EGF (I > 2.2) were extracted. As a result, 38, 35, 52 and 44 probe sets were selected for EGR4, FOSL-1, FHL2 and DIPA, respectively. The index value I was calculated for the microarray gene expression profile in the same way as for the qRT-PCR data. I = 2.2 corresponds to 95% point of fitted normal distribution. Probe Set IDs were converted to Entrez Gene IDs according to the manufacturer's annotation and then corresponding gene ontology (GO) terms were extracted from the ID mapping table provided by NCBI. Those probe sets without Gene ID were discarded in the analysis. Enrichment analysis was performed by Fisher's exact test followed by Bonferonni's correction. Those GO terms which showed a small p-value (p < 0.05) were regarded as enriched.
qRT-PCR for gene expression validation
For the qRT-PCR of siRNA-transfected cells, 500 ng of total RNA was reverse transcribed using the PrimeScript RT reagent Kit (TaKaRa, Shiga, Japan). cDNA equivalent to 5 ng of total RNA was used for all the PCR reactions. The sequences of the primers are as follows; 5'-GCA CCG TCA AGG CTG AGA AC-3' and 5'-ATG GTG GTG AAG ACG CCA GT-3' for GAPDH, 5'-ACT TGA AAG CAT CCA TGT GTG TGG AC and 5'-GGC CTG GCT CAA CAT GCT ACT AA-3' for c-FOS, 5'-AGC AGC AGC AGG TGA TTG GA-3' and 5'-CGC AGA TCA GCT CAT CAC AGA AG-3' for FOSL-1, 5'-TGG CAT AAC GAC TGC TTT AAC TGT A-3' and 5'-GTG TGA GAT CAC AAG CAG CAA-3' for FHL2. All PCR reactions were performed using SYBR Premix Ex Taq (TaKaRa) or KAPA SYBR Fast kit (KAPA Biosystems, Cape Town, South Africa) in the Thermal Cycler Dice Real Time System TP800 (TaKaRa). qRT-PCR was performed in triplicate for each sample using default two-step amplification procedures in a 25 μl reaction volume according to the manufacturer's instructions. The conditions for the PCR reaction were as follows: 60°C for 30 sec, 95°C for 15 sec, followed by a maximum of 40 cycles of 95°C for 5 sec, and 60°C for 20 sec. The standard curve method was used to determine relative quantification of mRNA abundance . For normalization of the qRT-PCR data, GAPDH expression was used as the control at each time point.
Cell lysate was cleared by centrifugation, and the protein concentration of the supernatant was determined using a protein assay reagent (BioRad Laboratories). Protein phosphorylation levels and total proteins were analyzed by Western blotting as previously described  using the requisite antibodies. For the Western blot analysis, anti-ERK (p44/42 MAP kinase), anti-phospho-ERK (Thr202/Tyr204), and anti-alpha-tubulin antibodies were purchased from Cell Signaling Technology, Inc. (Danvers, MA). Anti-FOS, anti-FRA-1 and anti-EGR4 antibodies were purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA), anti-FHL2 antibody from AVIVA System Biology (San Diego, CA) or Santa Cruz Biotechnology, and anti-c-JUN antibody from Upstate (Billerica, MA). Protein band intensities were quantified using a densitometer (Fuji Film Corp., Tokyo, Japan).
For the detection of phosphorylated-ERK, cells were treated with 10 nM EGF or HRG at each indicated time point. Protein lysates were prepared using the Cell lysis kit (Bio-Rad Laboratories). The presence of phospho-ERK1/2 was detected using the Bio-Plex phospho-protein assay kit (Bio-Rad Laboratories) according to the manufacturer's protocol. Data from the reaction was acquired and analyzed using the Bio-Plex suspension array system (Luminex 100 system, Bio-Rad Laboratories). Total proteins for ERK were measured using the Bio-Plex total protein assay kit (Bio-Rad Laboratories).
Gene silencing with RNAi
For 60-mm-diameter experiments, MCF-7 cells were harvested by trypsinization and seeded at 1.2 × 106 cells/well using HiperFect Transfection Reagent (QIAGEN) and CombiMAG magnetofection reagents (Chemicell GmbH, Berlin, Germany) according to manufacturer's protocol. For c-FOS siRNA transfection, 10 nM siGENOME SMARTpool c-FOS siRNA or non-targeting control siRNA (Dharmacon, Cramlington, UK) was included in the transfection mixture. For FOSL-1 and FHL2 siRNA transfection, siRNA was designed based on sequences specific for human cDNA; 5'-GCA TCA ACA CCA TGA GTG G-3' for FOSL-1 and 5'-GCA AGG ACT TGT CCT ACA A-3' for FHL2. Antisense and sense siRNA oligonucleotides with dTdT 3' overhangs were synthesized by TaKaRa Bio Inc. Each siRNA was added to 10 nM and compared with controls transfected using identical concentrations of control siRNA mixture. After 48 hrs of transfection, cells were starved for 16 hrs in serum-free DMEM. Cells were stimulated with 10 nM HRG for the indicated times in the figures, harvested and then lysed in preparation for qRT-PCR and immunoblotting.
Protein-protein interaction assay
Cells were washed with PBS and lysed in the lysis buffer. The supernatant was recovered after centrifugation. For immunoprecipitation, 0.5 mg of the aforementioned supernatant protein was incubated with 6 μg of antibody and rotated overnight for 4°C. Then, 20 μl of protein G Plus/Protein A-agarose Suspension (Calbiochem, Madison, WI) was added and the mix incubated for 3 hrs at 4°C on a rotating platform. Following centrifugation, beads were washed three times with HNTG buffer (20 mM HEPES (pH 7.5), 150 mM NaCl, 10 mM NaF, 1 mM Na3VO4, 0.5 μg/mL leupeptin, 1 μg/mL pepstatin A and 0.2 mM PMSF). Bound proteins were eluted with SDS sample buffer, resolved by SDS-PAGE, and transferred onto PVDF membranes.
Electrophoretic mobility shift assays (EMSAs)
Nuclear protein was extracted from ligand-treated MCF-7 cells. All procedures were carried out on ice. Treated cells were harvested, suspended in a five-fold of CH buffer (10 mM HEPES-KOH (pH 7.5), 2 mM MgCl2, 1 mM EDTA, 1 mM EGTA, 10 mM KCl, 1 mM DTT, 10 mM NaF, 0.1 mM Na3VO4, and 0.5 mM PMSF added just before use), incubated on ice for 10 min and then centrifuged. Precipitates were resuspended in a three-fold volume of CH buffer containing 0.2% NP-40 and then homogenized using a Dounce homogenizer (20 strokes). Homogenates were centrifuged at 15,000 rpm for 10 min at 4°C. To the supernatants was added 1 mL of CR buffer (40 mM HEPES-KOH (pH 7.5), 0.4 M KCl, 1 mM DTT, 10% (v/v) glycerol, 0.1 mM PMSF and 0.1% (w/v) aprotinin) and 5 M NaCl was added to a final concentration of 500 mM. Mixtures were incubated on ice for 30 min, centrifuged at 24,000 rpm for 20 min, and aliquots were frozen and stored at -80°C until use.
A double-stranded oligonucleotide corresponding to the 12-O-tetradecanoylphorbol-13-acetate (TPA) response element (TRE) binding site was synthesized with the following sequence; 5'-CTC TGG CAG GTG CGT CAG TCC G -3' for -318TRE . Synthesized oligonucleotides were end-labeled with [γ-32P]ATP (Amersham Bioscience, Piscataway, NJ) and cleaned up using a Gel Shift Assay System (Promega, Madison, WI) according to the manufacturer's instructions. Briefly, 15 μg of nuclear extract was incubated in gel shift binding buffer containing 32P-labeled oligopeptides. For the supershift assay, the reaction mixture contained 2 μl of anti-FHL2 specific antibody. For the oligonucleotide competition experiments, the reaction mixture was preincubated with a 50-fold excess of unlabeled oligonucleotide probes prior to the addition of radioactive probes. Samples were resolved on 5% non-denaturing polyacrylamide gel and exposed by radioautography (Fuji Film Corp.).
We previously showed that stimulation of MCF-7 breast cancer cells with EGF and HRG resulted in very similar early transcription profiles up to 90 min, however subsequent cellular phenotypes differed . Although both ligands evoked qualitatively similar signaling activities and early transcription, HRG induced prolonged signaling activities and significant expression of c-FOS protein, while EGF induced a transient signal and negligible amounts of c-FOS. Therefore, it was hypothesized that this all-or-none supply of c-FOS transcription factor, which plays a major role in AP-1 activation , might trigger changes in late transcription which determine ligand-specific cell fate. In an effort to investigate this hypothesis, MCF-7 cells were exposed to growth factors for longer time periods and the temporal expression of transcription factors was monitored.
HRG and EGF induced different transcription factors
HRG-induced genes identified by qRT-PCR
suppressor of Ty 4 homolog 1 (S. cerevisiae)
hepatitis delta antigen-interacting protein A
four and a half LIM domains 2
FOS-like antigen 1*
Having identified HRG-induced expression of specific transcription factors from the qRT-PCR results, gene expression analysis using microarray was performed in an effort to determine the time-course expression profile of the aforementioned five transcription factors and other genes up to 72 hrs (0, 0.5, 0.75, 1, 1.5, 2, 3, 4, 6, 8, 12, 24, 36, 48 and 72 hrs; 15 time points). Although results of the investigation of SUPT4H1 mRNA expression using a microarray platform were inconsistent with the results obtained from the qRT-PCR analysis (data not shown), results pertaining to the other four transcription factors (EGR4, FOSL-1, FHL2 and DIPA) showed good agreement with the qRT-PCR data, and time-dependent mRNA expression was only observed for HRG-stimulated cells (Fig. 1B and 1C). Interestingly, the expression peaks of these four transcription factors appeared one after the other following the expression of c-FOS (Fig. 1D). The gene expression data from both the microarray and qRT-PCR analysis showed that HRG could induce relatively higher expression levels of the c-FOS gene compared with EGF (ca. 60% of HRG-induced c-FOS), and that the ligand-induced differences in expression became more pronounced during the later expression of EGR4, FOSL-1, FHL2 and DIPA (Fig. 1B and 1C). Transient c-FOS expression might suggest negative regulation by other transcription factors. Furthermore, the data implies that c-FOS might be replaced in the AP-1 complex by another AP-1 member, thereby altering a function of AP-1  to facilitate response to HRG-mediated cell fate.
The product of the first inducible gene, EGR4, is a zinc-finger protein, a member of the EGR family of transcription regulatory factors which plays a critical role in mediating enduring forms of neuronal plasticity and the regulation of inflammatory cytokine gene transcription . EGR3 and EGR4 interact with NFκB p50 and p60 to activate transcription inflammatory-gene promoters . FRA-1 (FOSL-1 protein) is a member of the AP-1 family of transcription factors that includes c-FOS, and plays an important role in cell motility, invasion, and maintenance and progression in several transformed and neoplastic cells [33, 34, 35]. FRA-1 is known to contribute to cellular differentiation processes through interactions with c-FOS  and requires signal-dependent protein stabilization through the DEF domain (FXFP or FXYP) in a manner similar to c-FOS [37, 38, 39]. FHL2 can serve as a transcriptional coactivator of AP-1, androgen receptor, CREB and CREM in transformed cells and is known to associate with JUN and FOS [40, 41]. Interestingly, FHL2 has been reported to bind to phosphorylated ERK in vitro and inhibit nuclear localization and activity of ERK in stimulated cardiomyocytes, indicating its antagonistic role in cellular signaling . DIPA is known as a partner of C/EBP β and was reported to have an inhibitory effect on adipocyte differentiation in preadipocytes .
Although DIPA contains a basic region-leucine zipper DNA binding and dimerization domain, which has similarities to FRA family members , DIPA has never been reported to interact with the AP-1 complex, EGR4 or FHL2. Moreover, several of our preliminary experiments failed to show an interaction of DIPA with any of the AP-1 proteins (data not shown). Therefore, we decided to focus on validating the mutual regulation of the other three transcription factors (EGR4, FRA-1 and FHL2) together with c-FOS.
HRG induced time-dependent expression of c-FOS but not of EGR4
FRA-1 and FHL2 are associated with the c-FOS AP-1 complex
AP-1 proteins represent a group of IEG products that play important roles in triggering and regulating late transcription. IEG products which possess a DEF domain can act as sensors for ERK signaling [13, 15, 50]. Among our candidate transcription factors, FRA-1 and c-FOS possess DEF domains. In an effort to assay for AP-1 activity, a co-immunoprecipitation assay was performed (Fig 4B and 4D). The c-FOS and c-JUN gene expression profiles show good agreement with each other (Figs 1 and 4C), and c-JUN interacted with c-FOS immediately following HRG stimulation and then began to dissociate at 2 hr (Fig. 4B). On the other hand, the association between FRA-1 and c-FOS began to increase, and this interaction was maintained for several hours (Fig. 4D). Since c-FOS AP-1 family proteins cannot exist as homodimers after the dissociation of c-JUN at 2 hr, the results from Figs. 4B and 4D also indicate that FRA-1 co-immunoprecipitated with c-FOS (or vice versa) might associate with other binding partners, such as JUN AP-1 family proteins or FHL2. In Fig. 4D and 4E, FHL2 and c-FOS, and FRA-1 and FHL2 also showed a similar time-course in terms of complex formation. On the other hand, neither c-FOS nor FRA-1 could co-immunoprecipitate with JUNB and JUND (data not shown). Thus, results of the immunoprecipitation study suggested that c-FOS, FRA-1 and FHL2 might regulate the same transcriptional complex following regulation of the complex by c-JUN.
The upstream TPA response element (TRE) (-318) in the promoter region of FOSL-1 is important for inducing the FOSL-1 gene. TRE is a binding site for c-JUN and JUND [29, 51] and is also targeted by c-FOS and FOSB , although FOSL-1 transcription is also co-regulated by the binding of SRF, Elk1, ATF1 and CREB to the -276/-237 region for enhanced induction of FOSL-1 . In an effort to determine whether FHL2 can bind to FOSL-1 DNA, EMSA using TRE oligonucleotides was performed (Fig. 4F). The mobility of the labeled -318 TRE probe shifted in the presence of nuclear extract (control) and was dependent on HRG stimulation. The addition of anti-FHL2 antibody to the binding reaction resulted in supershifts, suggesting that FHL2 could directly or indirectly bind to TRE (-318) on the FOSL-1 promoter and perhaps regulate the expression together with other AP-1 proteins.
RNA interference of c-FOS suppressed FRA-1 and FHL2 gene and protein expression
In MCF-7 breast cancer cells, HRG can elicit differentiation while treatment of cells with EGF leads to cell proliferation, processes which possess different intensities of signaling and gene regulation that work in a coordinated manner. Sustained activation of ERK by HRG resulted in stabilization of signaling mediators and changes in the supply of transcription factor proteins possessing an ERK sensing domain, thus leading cells along a path of irreversible differentiation . Indeed, we identified a time-dependent interaction of several transcription factors whose expression levels were significantly elevated by HRG exposure, but not by EGF, during the course of a 72-hour time-course treatment of MCF-7 cells (Fig. 1). These transcription factors (Table 1) were expressed in a time-dependent manner, suggesting that they might regulate each other.
AP-1 consists of dimers of proteins encoded by FOS and JUN gene families, which have been widely implicated in differentiation, cell proliferation and transformation . The FOS proteins (c-FOS, FOSB, FRA-1 and FRA-2) form heterodimers with the JUN protein families (c-JUN, JUNB and JUND) and regulate gene expression from TRE and TRE-like elements present within various promoters [29, 38, 54]. Our immunoprecipitation assay showed that the AP-1 complex in HRG-treated MCF-7 cells contained c-JUN, c-FOS and FRA-1, although the association of c-JUN in the complex is transient (1-3 hrs after HRG stimulation), while that of c-FOS and FRA-1 are sustained for up to 24 hr (our unpublished data). On the other hand, we demonstrated that FHL2 could associate with AP-1 proteins such as c-FOS and FRA-1. Taken together with those results, late transcriptional regulation in MCF-7 cells is mediated by a regulatory complex containing c-FOS, FRA-1 and FHL2. One possible scenario is that after c-JUN dissociates from the AP-1 complex, FHL2 could be a binding partner of c-FOS and/or FRA-1. In PC12 cells, nerve growth factor (NGF) induces sustained c-JUN and c-FOS activity in events leading to neural differentiation [39, 55]. In MCF-7 cells, the gene expression profiles of c-FOS and c-JUN (Figs. 1 and 4C) induced by HRG were similar. Both expression patterns were transient for the first 1.5 hrs, and c-JUN seemed to dissociate from the complex within 3 hrs, even though c-FOS and FRA-1 remained within the complex for a longer period. FRA-1 gene expression was followed by the expression of two other AP-1 genes, c-FOS and c-JUN (Fig. 1), and FRA-1 protein induction was also prolonged for up to 6 hr following HRG stimulation (Fig. 5B). Thus, unlike NGF-induced signaling in PC12 cells, HRG treatment of MCF-7 cells evokes sustained formation of the AP-1 complex through FRA-1, but not c-JUN. Taken together, it seems that c-FOS and FRA-1, but not c-JUN, play an important role in MCF-7 cells in terms of late transcriptional processes and the progression of cell differentiation. Indeed, several pathological studies in breast cancer and neoplastic breast diseases have described FRA-1 as a useful marker in breast carcinogenesis, and its overexpression results in malignancy [56, 57, 58, 59].
Moron et al. suggested that FHL2 may act as a coactivator of the c-FOS and c-JUN complex by stimulating AP-1-dependent transcription . In fact, FHL2 was able to associate with the c-FOS and FRA-1 (Fig. 4D and 4E). The EMSA supershift experiment (Fig. 4F) also supported the view that FHL2 can bind to the -318 TRE sequence present within the FOSL-1 promoter region . The -318 TRE region is important as a c-FOS responsive element for inducing enhanced expression of FOSL-1 [29, 58] and serves as the binding site of AP-1 proteins such as c-JUN and JUND . The result indicates that FHL2 may regulate the transcription of FOSL-1 through this region together with other AP-1 components. However, further investigations are required to delineate the interaction mechanism and regulation system involving FHL2 and AP-1 proteins. Furthermore, there appear to be conflicting reports concerning the role played by FHL2, where it has been suggested that FHL2 can serve as a repressor of MEK1-ERK1/2 signaling [60, 61] or as an enhancer of the c-FOS promoter, whose gene is immediately expressed by activation of ERK1/2 [62, 63]. In this study, we demonstrated using RNAi that FHL2 knockdown induced clear elevation of c-FOS gene expression and ERK activation. The gradual reduction in phospho-ERK levels was followed by an increase in FHL2 expression (Fig. 7C). These results suggested that FHL2 might inhibit both ERK activity and ERK-dependent transcription. On the other hand, FOSL1 knockdown induced elevated expression of FHL2 (Fig. 6), which suggests that FHL2 is not a downstream target of FOSL1 and negatively regulates ERK signaling independently from c-FOS-FOSL1 regulation, even though FHL2 induction seemed to be influenced by c-FOS.
Our analysis indicated that a time-dependent transcriptional regulatory network is vital in controlling the upstream ERK signaling pathway through a negative feedback loop pertaining to MCF-7 cell differentiation. However, there is a possibility that multiple signaling pathways such as those involving PI3K and the estrogen receptor could regulate transcription in and the differentiation of MCF-7 cells [64, 65, 66], and other signal-inducible factors could affect and interfere with the transcription factors we have not identified. Nevertheless, it is noteworthy that the transcription factors identified in the current analysis showed sequential time-dependent expression and mutual regulation, and that these functions are regulated by upstream ERK signals. However, later transcription inhibits the original upstream signal by negative feedback once the signal becomes unnecessary. In general, negative feedback functions to stabilize biological systems and several earlier studies have indicated the presence of negative feedback in cellular differentiation processes . Our study has indicated that ligand-stimulated signaling activity is not only suppressed within intracellular signaling as demonstrated by EGF-induced Cbl down-regulation  or negative feedback within the MAPK cascade in PC12 cells , but is also regulated through de novo transcription.
We thank Ryoko Ushikoshi-Nakayama for experimental assistance. This work was partly supported by research grant for RIKEN Omics Science Center from the Ministry of Education, Culture, Sports, Science and Technology (MEXT), Japan to YH.
- 25.Nagashima T, Shimodaira H, Ide K, Nakakuki T, Tani Y, Takahashi K, Yumoto N, Hatakeyama M: Quantitative transcriptional control of ErbB receptor signaling undergoes graded to biphasic response for cell differentiation. J Biol Chem. 2007, 282: 4045-4056. 10.1074/jbc.M608653200.CrossRefPubMedGoogle Scholar
- 26.Suzuki H, Okunishi R, Hashizume W, Katayama S, Ninomiya N, Osato N, Sato K, Nakamura M, Iida J, Kanamori M, Hayashizaki H: Identification of region-specific transcription factor genes in the adult mouse brain by medium-scale real-time RT-PCR. FEBS Lett. 2004, 573: 214-218. 10.1016/j.febslet.2004.07.068.CrossRefPubMedGoogle Scholar
- 29.Adiseshaiah P, Papaiahgari SR, Vuong H, Kalvakolanu DV, Reddy SP: Multiple cis-elements mediate the transcriptional activation of human FRA-1 by 12-O-tetradecanoylphorbol-13-acetate in bronchial epithelial cells. J Biol Chem. 2003, 278: 47423-47433. 10.1074/jbc.M303505200.CrossRefPubMedGoogle Scholar
- 42.Purcell NH, Darwis D, Bueno OF, Müller JM, Schüle R, Molkentin JD: Extracellular signal-regulated kinase 2 interacts with and is negatively regulated by the LIM-only protein FHL2 in cardiomyocytes. Mol Cell Biol. 2004, 24: 1081-1095. 10.1128/MCB.24.3.1081-1095.2004.PubMedCentralCrossRefPubMedGoogle Scholar
- 43.Bezy O, Elabd C, Cochet O, Petersen RK, Kristiansen K, Dani C, Ailhaud G, Amri EZ: Delta-interacting protein A, a new inhibitory partner of CCAAT/enhancer-binding protein beta, implicated in adipocyte differentiation. J Biol Chem. 2005, 280: 11432-11438. 10.1074/jbc.M411741200.CrossRefPubMedGoogle Scholar
- 45.Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G: Gene ontology: tool for the unification of biology. Nat Genet. 2000, 25: 25-29. 10.1038/75556.PubMedCentralCrossRefPubMedGoogle Scholar
- 49.Nagashima T, Suzuki T, Kondo S, Kuroki Y, Takahashi K, Ide K, Yumoto N, Hasegawa A, Toyoda T, Kojima T, Konagaya A, Suzuki H, Hayashizaki Y, Sakaki Y, Hatakeyama M: Integrative genome-wide expression analysis bears evidence of estrogen receptor-independent transcription in heregulin-stimulated MCF-7 cells. PLoS ONE. 2008, 3: e1803-10.1371/journal.pone.0001803.PubMedCentralCrossRefPubMedGoogle Scholar
- 57.Chiappetta G, Ferraro A, Botti G, Monaco M, Pasquinelli R, Vuttariello E, Arnaldi L, Di Bonito M, D'Aiuto G, Pierantoni GM, Fusco A: FRA-1 protein overexpression is a feature of hyperplastic and neoplastic breast disorders. BMC Cancer. 2007, 7: 17-10.1186/1471-2407-7-17.PubMedCentralCrossRefPubMedGoogle Scholar
- 60.Purcell NH, Darwis D, Bueno OF, Müller JM, Schüle R, Molkentin JD: Extracellular signal-regulated kinase 2 interacts with and is negatively regulated by the LIM-only protein FHL2 in cardiomyocytes. Mol Cell Biol. 2004, 24: 1081-1095. 10.1128/MCB.24.3.1081-1095.2004.PubMedCentralCrossRefPubMedGoogle Scholar
- 61.Wang J, Yang Y, Xia HH, Gu Q, Lin MC, Jiang B, Peng Y, Li G, An X, Zhang Y, Zhuang Z, Zhang Z, Kung HF, Wong BC: Suppression of FHL2 expression induces cell differentiation and inhibits gastric and colon carcinogenesis. Gastroenterology. 2007, 132: 1066-1076. 10.1053/j.gastro.2006.12.004.CrossRefPubMedGoogle Scholar
- 62.Treinies I, Paterson HF, Hooper S, Wilson R, Marshall CJ: Activated MEK stimulates expression of AP-1 components independently of phosphatidylinositol 3-kinase (PI3-kinase) but requires a PI3-kinase signal to stimulate DNA synthesis. Mol Cell Biol. 1999, 19: 321-329.PubMedCentralCrossRefPubMedGoogle Scholar
- 68.Lill NL, Douillard P, Awwad RA, Ota S, Lupher ML, Miyake S, Meissner-Lula N, Hsu VW, Band H: The evolutionarily conserved N-terminal region of Cbl is sufficient to enhance down-regulation of the epidermal growth factor receptor. J Biol Chem. 2000, 275: 367-377. 10.1074/jbc.275.1.367.CrossRefPubMedGoogle Scholar
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