Abstract
This chapter deals with feeding experiments in biosynthetic studies of secondary metabolites from marine organisms. The evolution of the field is traced through a critical report of both review papers published from the 1980s and selected studies published in the latest years. The progress in the methodologies, from simple modification of advanced precursors, through incorporation of substrates with radioactive or stable isotopes, to recent extensive use of molecular genetic techniques, served as a main guideline for the preparation of this overview. Finally, after a section dedicated to the methodologies, the biosynthesis of oxylipins from diatoms and propionates from Mediterranean sacoglossans, recently conducted in the authors’ institute, will be discussed with more detail.
∗The chapter is dedicated to the memory of Prof. Constantinos Vagias, valuable friend and talented scientist.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Walsh CT, Fischbach MA (2010) Natural products version 2.0: connecting genes to molecules. J Am Chem Soc 132:2469–2493
Barrow KD (1983) Biosynthesis of marine metabolites. In: Scheuer PJ (ed) Marine natural products: chemical and biological perspectives, vol 5. Academic, New York
Garson MJ (1989) Biosynthetic studies on marine natural products. Nat Prod Rep 6:143–170
Garson MJ (1993) The biosynthesis of marine natural products. Chem Rev 93:1699–1733
Moore BS (1999) Biosynthesis of marine natural products: microorganisms and macroalgae. Nat Prod Rep 16:653–674
Kerr RG (2000) Biosynthesis of bioactive marine natural products. In: Raman A (ed) Studies in natural product chemistry, vol 21. Elsevier, Amsterdam
Bhakuni DS, Rawat DS (2005) Bioactive marine natural products – biosynthesis of bioactive metabolites of marine organisms. Anamaya, New Delhi
Moore BS (2005) Biosynthesis of marine natural products: microorganisms (part A). Nat Prod Rep 22:580–593
Moore BS (2006) Biosynthesis of marine natural products: macroorganisms (part B). Nat Prod Rep 23:615–629
Cimino G, Sodano G (1993) Biosynthesis of secondary metabolites in marine molluscs. In: Scheuer PJ (ed) Topics in current chemistry, vol 167. Springer, Berlin-Heidelberg
Rein KS, Snyder RV (2006) The biosynthesis of polyketide metabolites by dinoflagellates. In: Laskin A, Sariaslani S, Gadd G (eds) Advances in applied microbiology, vol 59. Elsevier (Academic Press), Amsterdam
Cimino G, Fontana A, Cutignano A, Gavagnin M (2004) Biosynthesis in opisthobranch molluscs: general outline in the light of recent use of stable isotopes. Phytochem Rev 3:285–307
Baker BJ, Kerr RG (1993) Biosynthesis of marine sterols. In: Scheuer PJ (ed) Topics in current chemistry, vol 167. Springer, Berlin-Heidelberg
Davies-Coleman MT, Garson MJ (1998) Marine polypropionates. Nat Prod Rep 15:477–493
Gerwick WH (1994) Structure and biosynthesis of marine algal oxylipins. Biochim Biophys Acta 1211:243–255
Kobayashi J, Tsuda M (2004) Amphidinolides, bioactive macrolides from symbiotic marine dinoflagellates. Nat Prod Rep 21:77–93
Garson MJ, Simpson JS (2004) Marine isocyanides and related natural products – structure, biosynthesis and ecology. Nat Prod Rep 21:164–179
Morales RW, Litchfield C (1977) Incorporation of 1-14C-Acetate into C26 fatty acids of the marine sponge Microciona prolifera. Lipids 12:570–576
Young DN, McConnell OJ, Fenical W (1981) In vivo biosynthesis of tribromoheptene oxide in Bonnemaisonia nootkana. Phytochemistry 20:2335–2337
De Rosa M, Minale L, Sodano G (1976) Metabolism in Porifera VI. Role of the 5,6 double bond and the fate of the C-4 cholesterol during the conversion into 3β-hydroxymethyl-A-nor-5α-steranes in the sponge Axinella verrucosa. Experientia 32:1112–1113
Bibolino L, Minale L, Sodano G (1978) Investigations on the ring contraction step in the biosynthesis of A-nor-stanols by the marine sponge Axinella verrucosa. J Chem Soc Chem Commun 13:524–525
Stallard MO, Faulkner DJ (1974) Chemical constituents of the digestive gland of the sea hare Aplysia californica II. Chemical transformations. Comp Biochem Physiol B 49:37–41
Hori A, Shimizu Y (1983) Biosynthetic 15N-enrichment and 15N n.m.r. spectra of neosaxitoxin and gonyautoxin-II: application to structure determination. J Chem Soc Chem Commun 790–792
Lee MS, Repeta DJ, Nakanishi K, Zagorski MG (1986) Biosynthetic origins and assignments of 13C NMR peaks of brevetoxin B. J Am Chem Soc 108:7855–7856
Catalan CAN, Thompson JE, Kokke WCMC, Djerassi C (1985) Biosynthetic studies of marine lipids—3: experimental demonstration of the course of side chain extension in marine sterols. Tetrahedron 41:1073–1084
Garson MJ (1986) Biosynthesis of the novel diterpene isonitrile diisocyanoadociane by a marine sponge of the Amphimedon genus: incorporation studies with sodium [14C]cyanide and sodium [2-14C]acetate. J Chem Soc Chem Commun 35–36
Fookes CJR, Garson MJ, MacLeod JK, Skelton BW, White AH (1988) Biosynthesis of diisocyanoadociane, a novel diterpene from the marine sponge Amphimedon sp. Crystal structure of a monoamide derivative. J Chem Soc Perkin Trans 1:1003–1011
Garson MJ (1986) Abstracts of 8th National organic meeting Royal Australian Chemical Institute, Adelaide; further published as: Dai MC, Garson MJ, Coll JC (1991) Biosynthetic processes in soft corals. I. A comparison of terpene biosynthesis in Alcyonium molle (Alcyoniidae) and Heteroxenia sp. (Xeniidae). Comp Biochem Physiol B 99:775–783
Ireland C, Scheuer PJ (1979) Photosynthetic marine mollusks: in vivo 14C incorporation into metabolites of the sacoglossan Placobranchus ocellatus. Science 205:922–923
Cimino G, De Rosa S, De Stefano S, Sodano G, Villani G (1983) Dorid nudibranch elaborates its own chemical defense. Science 219:1237–1238
Needham J, Andersen RJ, Kelly MT (1992) Biosynthesis of oncorhyncolide, a metabolite of the seawater bacterial isolate MK 157. J Chem Soc Chem Commun 18:1367–1369
Boland W, Mertes K (1985) Biosynthesis of algal pheromones. A model study with the compositae Senecio isatideus. Eur J Biochem 147:83–91
Stratmann K, Boland W, Muller DG (1992) Pheromones of marine brown algae; a new branch of the eicosanoid metabolism. Angew Chem Int Ed Engl 31:1246–1248
Karuso P, Scheuer PJ (1989) Biosynthesis of isocyanoterpenes in sponges. J Org Chem 54:2092–2095
Cimino G, Ghiselin MT (2009) Chemical defense and the evolution of opisthobranch gastropods. California Academy of Sciences, San Francisco
Cimino G, Fontana A, Gavagnin M (1999) Marine opisthobranch molluscs: chemistry and ecology in sacoglossans and dorids. Curr Org Chem 3:327–372
Cimino G, Ciavatta ML, Fontana A, Gavagnin M (2001) Metabolites of marine opisthobranchs: chemistry and biological activity. In: Tringali C (ed) Bioactive compounds from natural sources. Taylor and Francis, London
Cimino G, De Rosa S, De Stefano S, Morrone R, Sodano G (1985) The chemical defense of nudibranch molluscs: structure, biosynthetic origin and defensive properties of terpenoids from the dorid nudibranch Dendrodoris grandiflora. Tetrahedron 41:1093–1100
Cimino G, De Rosa S, De Stefano S, Sodano G (1985) Observations on the toxicity and metabolic relationships of polygodial, the chemical defense of the nudibranch Dendrodoris limbata. Experientia 41:1335–1336
Cimino G, De Rosa S, De Stefano S, Sodano G (1986) Marine natural products: new results from Mediterranean invertebrates. Pure Appl Chem 58:375–386
Cimino G, Sodano G (1989) The chemical ecology of Mediterranean opisthobranchs. Chem Scr 29:389–394
Gustafson K, Andersen RJ, Chen MHM, Clardy J, Hochlowski JE (1984) Terpenoic acid glycerides from the dorid nudibranch Archidoris montereyensis. Tetrahedron Lett 25:11–14
Gustafson K, Andersen RJ (1985) Chemical studies of British Columbia nudibranchs. Tetrahedron 41:1101–1108
Cimino G, Spinella A, Sodano G (1989) Naturally occurring prostaglandin-1,15-lactones. Tetrahedron Lett 30:3589–3592
Cimino G, Crispino A, Di Marzo V, Spinella A, Sodano G (1991) Prostaglandin 1,15-lactones of the F series from the nudibranch mollusk Tethys fimbria. J Org Chem 56:2907–2911
Cimino G, Crispino A, Di Marzo V, Sodano G, Spinella A, Villani G (1991) A marine mollusc provides the first example of in vivo storage of prostaglandins: prostaglandin-1,15-lactones. Experientia 47:56–60
Di Marzo V, Cimino G, Crispino A, Minardi C, Sodano G, Spinella A (1991) A novel multifunctional metabolic pathway in a marine mollusc leads to unprecedented prostaglandin derivatives (prostaglandin-1,15-lactones). Biochem J 273:593–600
Di Marzo V, Minardi C, Vardaro RR, Mollo E, Cimino G (1992) Prostaglandin F-1,15-lactone fatty acyl esters: a prostaglandin lactone pathway branch developed during the reproduction and early larval stages of a marine mollusk. Comp Biochem Physiol 101B:99–104
Manker DC, Garson MJ, Faulkner DJ (1988) De novo biosynthesis of polypropionate metabolites in the marine pulmonate Siphonaria denticulata. J Chem Soc Chem Commun 1061–1062
Garson MJ, Small CJ, Skelton BW, Thinapong P, White AH (1990) Structural and stereochemical correlations of polypropionate metabolites from marine pulmonates: revision of the relative stereochemistry of pectinatone by X-ray structure analysis. J Chem Soc Perkin Trans 1:805–807
Needham J, Kelly MT, Ishige M, Andersen RJ (1994) Andrimid and moiramides A-C, metabolites produced in culture by a marine isolate of the bacterium Pseudomonas fluorescens: structure elucidation and biosynthesis. J Org Chem 59:2058–2063
Sitachitta N, Rossi J, Roberts MA, Gerwick WH, Fletcher MD, Willis CL (1998) Biosynthesis of the marine cyanobacterial metabolite barbamide. 1. Origin of the trichloromethyl group. J Am Chem Soc 120:7131–7132
Chang Z, Sitachitta N, Rossi JV, Roberts MA, Flatt PM, Jia J, Sherman DH, Gerwick WH (2004) Biosynthetic pathway and gene cluster analysis of curacin a, an antitubulin natural product from the tropical marine cyanobacterium Lyngbya majuscula. J Nat Prod 67:1356–1367
Renner MK, Jensen PR, Fenical W (2000) Mangicols: structures and biosynthesis of a new class of sesterterpene polyols from a marine fungus of the genus Fusarium. J Org Chem 65:4843–4852
Kobayashi H, Meguro S, Yoshimoto T, Namikoshi M (2003) Absolute structure, biosynthesis, and anti-microtubule activity of phomopsidin, isolated from a marine-derived fungus Phomopsis sp. Tetrahedron 59:455–459
Massé G, Belt ST, Rowland SJ, Rohmer M (2004) Isoprenoid biosynthesis in the diatoms Rhizosolenia setigera (Brightwell) and Haslea ostrearia (Simonsen). Proc Natl Acad Sci USA 101:4413–4418
Massé G, Belt ST, Rowland SJ (2004) Biosynthesis of unusual monocyclic alkenes by the diatom Rhizosolenia setigera (Brightwell). Phytochemistry 65:1101–1106
Pohnert G, Jung V (2003) Intracellular compartmentation in the biosynthesis of caulerpenyne: study on intact macroalgae using stable-isotope-labeled precursors. Org Lett 5:5091–5093
Brust A, Garson MJ (2003) Advanced precursors in marine biosynthetic study. Part 3: the biosynthesis of dichloroimines in the tropical marine sponge Stylotella aurantium. Tetrahedron Lett 44:327–330
Simpson JS, Brust A, Garson MJ (2004) Biosynthetic pathways to dichloroimines; precursor incorporation studies on terpene metabolites in the tropical marine sponge Stylotella aurantium. Org Biomol Chem 2:949–956
Graziani EI, Andersen RJ, Krug PJ, Faulkner DJ (1996) Stable isotope incorporation evidence for the de novo biosynthesis of terpenoic acid glycerides by dorid nudibranchs. Tetrahedron 52:6869–6878
Fontana A, Tramice A, Cutignano A, d’Ippolito G, Gavagnin M, Cimino G (2003) Terpene biosynthesis in the nudibranch Doriopsilla areolata. J Org Chem 68:2405–2409
Gavagnin M, Mollo E, Castelluccio F, Ghiselin MT, Calado G, Cimino G (2001) Can mollusks biosynthesize typical sponge metabolites? The case of the nudibranch Doriopsilla areolata. Tetrahedron 57:8913–8916
Butler MS, Capon RJ (1993) Beyond polygodial: new drimane sesquiterpene from a Southern marine sponge Dysidea sp. Aust J Chem 46:1255–1267
Fontana A, Tramice A, Cutignano A, d’Ippolito G, Cimino G (2003) Studies on the biogenesis of verrucosins, toxic diterpenoid glycerides of the Mediterranean mollusc Doris verrucosa. Eur J Org Chem 16:2104–2108
Giner JL (1993) Biosynthesis of marine sterol side chains. Chem Rev 93:1735–1752
De Luca P, De Rosa M, Minale L, Sodano G (1972) Marine sterols with a new pattern of side-chain alkylation from the sponge Aplysina(=Verongia) aerophoba. J Chem Soc Perkin Trans 1:2132–2135
Fattorusso E, Magno S, Mayol L, Santacroce C, Sica D (1975) Calysterol: a C29 cyclopropene-containing marine sterol from the sponge Calyx nicaensis. Tetrahedron 31:1715–1716
Minale L, Sodano G (1974) Marine sterols: unique 3β-hydroxymethyl-A-nor-5α-steranes from the sponge Axinella verrucosa. J Chem Soc Perkin Trans 1:2380–2384
Minale L, Sodano G (1974) Marine sterols: 19-nor-stanols from the sponge Axinella polypoides. J Chem Soc Perkin Trans 1:1888–1892
De Rosa M, Minale L, Sodano G (1975) Metabolism in Porifera-V. Biosynthesis of 19-nor-stanols: conversion of cholesterol into 19-nor-cholestanols by the sponge Axinella polypoides. Experientia 31:758–759
Djerassi C, Silva CJ (1991) Biosynthetic studies of marine lipids. 41 Sponge sterols: origin and biosynthesis. Acc Chem Res 24:371–378
Cafieri F, Fattorusso E, Magno S, Santacroce C, Sica D (1973) Isolation and structure of axisonitrile-1 and axisothiocyanate-1 two unusual sesquiterpenoids from the marine sponge Axinella cannabina. Tetrahedron 29:4259–4262
Di Blasio B, Fattorusso E, Magno S, Mayol L, Pedone C, Santacroce C, Sica D (1976) Axisonitrile-3, axisothiocyanate-3 and axamide-3. Sesquiterpenes with a novel spiro[4,5]decane skeleton from the sponge Axinella cannabina. Tetrahedron 32:473–478
Dumdei J, Flowers AE, Garson MJ, Moore CJ (1997) The biosynthesis of sesquiterpene isocyanides and isothiocyanates in the marine sponge Acanthella cavernosa (Dendy); Evidence for dietary transfer to the dorid nudibranch Phyllidiella pustulosa. Comp Biochem Physiol A Physiol 118:1385–1392
Simpson JS, Garson MJ (2004) Biosynthetic pathways to isocyanides and isothiocyanates; precursor incorporation studies on terpene metabolites in the tropical marine sponges Amphimedon terpenensis and Axinyssa n.sp. Org Biomol Chem 2:939–948
Karuso P (1987) Chemical ecology of the nudibranchs. In: Scheuer PJ (ed) Bioorganic marine chemistry, vol 1. Springer, Berlin
Cimino G, Sodano G (1994) Transfer of sponge secondary metabolites to predators. In: Van Soest RWM, Van Kempen TMG, Braekman JC (eds) Sponges in time and space: biology, chemistry, paleontology. AA Balkema, Rotterdam
Fenical W, Sleeper HL, Paul VJ, Stallard MO, Sun HH (1979) Defensive chemistry of Navanax and related opisthobranch molluscs. Pure Appl Chem 51:1865–1874
Porcelli M, Cacciapuoti G, Zappia V, Cimino G, Gavagnin M, Sodano G (1989) Biosynthesis and metabolism of 9-[5'-deoxy-(methylthio)-β-D-xylofuranosyl] adenine, a novel natural analog of methylthioadenosine. Biochem J 263:635–640
Cutignano A, Tramice A, De Caro S, Villani G, Cimino G, Fontana A (2003) Biogenesis of 3-alkylpyridine alkaloids in the marine mollusc Haminoea orbignyana. Angew Chem Int Ed 42:2633–2636
Cutignano A, Cimino G, Giordano A, d’Ippolito G, Fontana A (2004) Polyketide origin of 3-alkylpyridines in the marine mollusc Haminoea orbignyana. Tetrahedron Lett 45:2627–2629
Graziani EI, Andersen RJ (1996) Investigations of sesquiterpenoid biosynthesis by the dorid nudibranch Acanthodoris nanaimoensis. J Am Chem Soc 118:4701–4702
Fontana A, Villani G, Cimino G (2000) Terpene biosynthesis in marine molluscs: incorporation of glucose in drimane esters of Dendrodoris nudibranchs via classical mevalonate pathway. Tetrahedron Lett 41:2429–2433
Garson MJ, Dexter AF, Lambert LK, Liokas V (1992) Isolation of the bioactive terpene 7-deacetoxyolepupuane from the temperate marine sponge Dysidea sp. J Nat Prod 55:364–367
Moghaddam MF, Gerwick WH (1991) Cell-Free biosynthesis and source of hydroxyl groups in (12R,13S)-dihydroxy-(5Z,8Z,10E,14Z)-eicosatetraenoic acid, a novel eicosanoid from the marine alga Gracilariopsis lemaneiformis. J Nat Prod 54:1619–1624
Gerwick WH, Moghaddam MF, Hamberg M (1991) Oxylipin metabolism in the red alga Gracilariopsis lemaneiformis: mechanism of formation of vicinal dihydroxy fatty acids. Arch Biochem Biophys 290:436–444
Xiang L, Kalaitzis JA, Moore BS (2004) EncM, a versatile enterocin biosynthetic enzyme involved in Favorskii oxidative rearrangement, aldol condensation, and heterocycle-forming reactions. Proc Natl Acad Sci USA 101:15609–15614
Beer LL, Moore BS (2007) Biosynthetic convergence of salinosporamides a and B in the marine actinomycete Salinispora tropica. Org Lett 9:845–848
Liu Y, Hazzard C, Eustáquio AS, Reynolds KA, Moore BS (2009) Biosynthesis of salinosporamides from α, β-unsaturated fatty acids: implications for extending polyketide synthase diversity. J Am Chem Soc 131:10376–10377
Eustáquio AS, McGlinchey RP, Liu Y, Hazzard C, Beer LL, Florova G, Alhamadsheh MM, Lechner A, Kale AJ, Kobayashi Y, Reynolds KA, Moore BS (2009) Biosynthesis of the salinosporamide A polyketide synthase substrate chloroethylmalonyl-coenzyme A from S-adenosyl-L-methionine. Proc Natl Acad Sci USA 106:12295–12300
Feling RH, Buchanan GO, Mincer TJ, Kauffman CA, Jensen PR, Fenical W (2003) Salinosporamide a: a highly cytotoxic proteasome inhibitor from a novel microbial source, a marine bacterium of the new genus Salinospora. Angew Chem Int Ed 42:355–357
Williams PG, Buchanan GO, Feling RH, Kauffman CA, Jensen PR, Fenical W (2005) New cytotoxic salinosporamides from the marine actinomycete Salinispora tropica. J Org Chem 70:6196–6203
Reed KA, Manam RR, Mitchell SS, Xu J, Teisan S, Chao TH, Deyanat-Yazdi G, Neuteboom STC, Lam KS, Potts BCM (2007) Salinosporamides D−J from the marine actinomycete Salinispora tropica, bromosalinosporamide, and thioester derivatives are potent inhibitors of the 20S proteasome. J Nat Prod 70:269–276
Stadler M, Bitzer J, Mayer-Bartschmid A, Müller H, Benet-Buchholz J, Gantner F, Tichy HV, Reinemer P, Bacon KB (2007) Cinnabaramides a−G: analogues of lactacystin and salinosporamide from a terrestrial streptomycete. J Nat Prod 70:246–252
Miljkovic A, Mantle PG, Williams DJ, Rassing B (2001) Scorpinone: a new natural azaanthraquinone produced by a Bispora-like tropical fungus. J Nat Prod 64:1251–1253
Mantle PG, Hawksworth DL, Pazoutova S, Collinson LM, Rassing BR (2006) Amorosia littoralis gen. sp. nov., a new genus and species name for the scorpinone and caffeine-producing hyphomycete from the littoral zone in the Bahamas. Mycol Res 110:1371–1378
Van Wagoner RM, Mantle PG, Wright JLC (2008) Biosynthesis of scorpinone, a 2-azaanthraquinone from Amorosia littoralis, a fungus from marine sediment. J Nat Prod 71:426–430
Kadkol MV, Gopalkrishnan KS, Narasimhachari N (1971) Isolation and characterization of naphthaquinone pigments from Torula herbarum (pers.) herbarin and dehydroherbarin. J Antibiot 24:245–248
Parisot D, Devys M, Barbier M (1989) Conversion of anhydrofusarubin lactol into the antibiotic bostrycoidin. J Antibiot 42:1189–1190
Du L, Zhu T, Fang Y, Liu H, Gu Q, Zhu W (2007) Aspergiolide A, a novel anthraquinone derivative with naphtho[1,2,3-de]chromene-2,7-dione skeleton isolated from a marine-derived fungus Aspergillus glaucus. Tetrahedron 63:1085–1088
Tao K, Du L, Sun X, Cai M, Zhu T, Zhou X, Gu Q, Zhang Y (2009) Biosynthesis of aspergiolide A, a novel antitumor compound by a marine-derived fungus Aspergillus glaucus via the polyketide pathway. Tetrahedron Lett 50:1082–1085
Anke H, Kolthoum I, Zähner H, Laatsch H (1980) Metabolic products of microorganisms. 185. The anthraquinones of the Aspergillus glaucus group. 1. Occurrence, isolation, identification and antimicrobial activity. Arch Microbiol 126:223–230
Lund ED, Chu FLE, Littreal PR, Ruck KE, Harvey E (2009) An investigation of the mechanisms for sterol synthesis and dietary sterol bioconversion in the heterotrophic protists Oxyrrhis marina and Gyrodinium dominans. J Exp Mar Biol Ecol 374:150–159
Stratmann K, Boland W, Müller DG (1993) Biosynthesis of pheromones in female gametes of marine brown algae (phaeophyceae). Tetrahedron 49:3755–3766
Rui F, Boland W (2010) Algal pheromone biosynthesis: stereochemical analysis and mechanistic implications in gametes of Ectocarpus siliculosus. J Org Chem 75:3958–3964
Ponhert G, Boland W (1997) Pericyclic reactions in nature: synthesis and cope rearrangement of thermolabile bis-alkenylcyclopropanes from female gametes of marine brown algae (phaeophyceae). Tetrahedron 53:13681–13694
Cimino G, Spinella A, Sodano G (1989) Potential alarm pheromones from the Mediterranean opisthobranch Scaphander lignarius. Tetrahedron Lett 30:5003–5004
Della Sala G, Cutignano A, Fontana A, Spinella A, Calabrese G, Domenech-Coll A, d’Ippolito G, Della Monica C, Cimino G (2007) Towards the biosynthesis of the aromatic products of the Mediterranean mollusc Scaphander lignarius: isolation and synthesis of analogues of lignarenones. Tetrahedron 63:7256–7263
Cutignano A, Avila C, Domenech-Coll A, d’Ippolito G, Cimino G, Fontana A (2008) First biosynthetic evidence on the phenyl-containing polyketides of the marine mollusc Scaphander lignarius. Org Lett 10:2963–2966
Fontana A, unpublished data.
Schultz AW, Oh DC, Carney JR, Williamson RT, Udwary DW, Jensen PR, Gould SJ, Fenical W, Moore BS (2008) Biosynthesis and structures of cyclomarins and cyclomarazines, prenylated cyclic peptides of marine actinobacterial origin. J Am Chem Soc 130:4507–4516
Renner MK, Shen YC, Cheng XC, Jensen PR, Frankmoelle W, Kauffman CA, Fenical W, Lobkovsky E, Clardy J (1999) Cyclomarins A − C, new antiinflammatory cyclic peptides produced by a marine bacterium (Streptomyces sp.). J Am Chem Soc 121:11273–11276
Jensen PR, Williams PG, Oh DC, Zeigler L, Fenical W (2007) Species-specific secondary metabolite production in marine actinomycetes of the genus Salinispora. Appl Environ Microbiol 73:1146–1152
Gontang EA, Fenical W, Jensen PR (2007) Phylogenetic diversity of Gram-positive bacteria cultured from marine sediments. Appl Environ Microbiol 73:3272–3282
Fenical W, Jensen PR (2006) Developing a new resource for drug discovery: marine actinomycete bacteria. Nat Chem Biol 2:666–673
Kellmann R, Stüken A, Orr RJS, Svendsen HM, Jakobsen KS (2010) Biosynthesis and molecular genetics of polyketides in marine dinoflagellates. Mar Drugs 8:1011–1048
Hallegraeff GM, Anderson DM, Cembella AD (2003) Manual on harmful marine microalgae, 2nd edn. UNESCO, Paris
Shimizu Y (1996) Microalgal metabolites: a new perspective. Ann Rev Microbiol 50:431–465
Kellmann R, Neilan BA (2007) Biochemical characterization of paralytic shellfish toxin biosynthesis in vitro. J Phycol 43:497–508
Kellmann R, Mihali TK, Jeon YJ, Pickford R, Pomati F, Neilan BA (2008) Biosynthetic intermediate analysis and functional homology reveal a saxitoxin gene cluster in cyanobacteria. Appl Environ Microbiol 74:4044–4053
Piel J (2004) Metabolites from symbiotic bacteria. Nat Prod Rep 21:519–538
Bewley CA, Faulkner DJ (1998) Lithistid sponges: star performers or hosts to the stars. Angew Chem Int Ed 37:2162–2178
Li Z (2009) Advances in marine microbial symbionts in the China Sea and related pharmaceutical metabolites. Mar Drugs 7:113–129
Look SA, Fenical W, Matsumoto GK, Clardy J (1986) The pseudopterosins: a new class of antiinflammatory and analgesic diterpene pentosides from the marine sea whip Pseudopterogorgia elisabethae (Octocorallia). J Org Chem 51:5140–5145
Look SA, Fenical W (1987) The seco-pseudopterosins, new anti-inflammatory diterpene-glycosides from a Caribbean gorgonian octocoral of the genus Pseudopterogorgia. Tetrahedron 43:3363–3370
Mydlarz LD, Jacobs RS, Boehnlein J, Kerr RG (2003) Pseudopterosin biosynthesis in Symbiodinium sp., the dinoflagellate symbiont of Pseudopterogorgia elisabethae. Chem Biol 10:1051–1056
Coleman AC, Kerr RG (2000) Radioactivity-guided isolation and characterization of the bicyclic pseudopterosin diterpene cyclase product from Pseudopterogorgia elisabethae. Tetrahedron 56:9569–9574
Kohl AC, Kerr RG (2004) Identification and characterization of the pseudopterosin diterpene cyclase, elisabethatriene synthase, from the marine gorgonian, Pseudopterogorgia elisabethae. Arch Biochem Biophys 424:97–104
Ferns TA, Kerr RG (2005) Oxidations of erogorgiaene in pseudopterosin biosynthesis. Tetrahedron 61:12358–12365
Ferns TA, Kerr RG (2005) Identification of amphilectosins as key intermediates in pseudopterosin biosynthesis. J Org Chem 70:6152–6157
Kerr RG, Kohl AC, Ferns TA (2006) Elucidation of the biosynthetic origin of the anti-inflammatory pseudopterosins. J Ind Microbial Biotechnol 33:532–538
Blunt JW, Copp BR, Hu WP, Munro MHG, Northcote PT, Prinsep MR (2011) Marine natural products. Nat Prod Rep 28:196–268
Piel J, Hui D, Wen G, Butzke D, Platzer M, Fusetani N, Matsunaga S (2004) Antitumor polyketide biosynthesis by an uncultivated bacterial symbiont of the marine sponge Theonella swinhoei. Proc Natl Acad Sci USA 101:16222–16227
Schirmer A, Gadkari R, Reeves CD, Ibrahim F, DeLong EF, Hutchinson CR (2005) Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissoluta. Appl Environ Microbiol 71:4840–4849
Kennedy J, Marchesi JR, Dobson ADW (2007) Metagenomic approaches to exploit the biotechnological potential of the microbial consortia of marine sponges. Appl Microbiol Biotechnol 75:11–20
Kennedy J, Flemer B, Jackson SA, Lejon DPH, Morrissey JP, O’Gara F, Dobson ADW (2010) Marine metagenomics: new tools for the study and exploitation of marine microbial metabolism. Mar Drugs 8:608–628
Hamann MT, Roggo S, Hill RT (2007) Marine natural products. Key advances to the practical application of this resource in drug development. CHIMIA 61:313–321
Kasanah NK, Rao KV, Yousaf M, Wedge DE, Hill RT, Hamann MT (2004) Biotransformation studies of the manzamine alkaloid. Mar Biotechnol 6:S268–S272
Thomas TRA, Kavlekar DP, LokaBharathi PA (2010) Marine drugs from sponge-microbe association – A review. Mar Drugs 8:1417–1468
Newman DJ, Hill RT (2006) New drugs from marine microbes: the tide is turning. J Ind Microbiol Biotechnol 33:539–5418
Simpson TJ (1998) Application of isotopic methods to secondary metabolic pathways. In: Leeper FJ, Vederas JC (eds) Biosynthesis. Polyketides and vitamins. Springer, Berlin
Rohmer M (1999) The discovery of a mevalonate-independent pathway for isoprenoid biosynthesis in bacteria, algae and higher plants. Nat Prod Rep 13:565–574
Dewick PM (2002) The biosynthesis of C5-C25 terpenoid compounds. Nat Prod Rep 16:97–130
Wendel T, Jüttner F (1996) LOX-mediated formation of hydrocarbons and unsaturated aldehydes in freshwater diatoms. Phytochemistry 41:1445–1449
d’Ippolito G, Cutignano A, Briante R, Febbraio F, Cimino G, Fontana A (2005) New C16 fatty-acid-based oxylipin pathway in the marine diatom Thalassiosira rotula. Org Biomol Chem 3:4065–4070
Fontana A, d’Ippolito G, Cutignano A, Romano G, Lamari N, Massa Gallucci A, Cimino G, Miralto A, Ianora A (2007) LOX-induced lipid peroxidation as mechanism responsible for the detrimental effect of marine diatoms on zooplankton grazers. Chembiochem 8:1810–1818
Fontana A, d’Ippolito G, Cutignano A et al (2007) Oxylipin pathways in marine diatoms: a look at the chemical aspects. Pur Appl Chem 79:481–490
d’Ippolito G, Lamari L, Montresor M (2009) 15S-Lipoxygenase metabolism in the marine diatom Pseudonitczha delicatissima. New Phytol 183:1064–1071
Wichard T, Poulet S, Pohnert G (2005) Determination and quantification of α, β, γ, δ-unsaturated aldehydes as pentafluorobenzyl-oxime derivates in diatom cultures and natural phytoplankton populations: application in marine field studies. J Chromatogr B 814:155–161
Bouarab K, Adas F, Gaquerel E, Kloareg B, Salaün JP, Potin P (2004) The innate immunity of a marine red alga involves oxylipins from both the eicosanoid and octadecanoid pathways. Plant Physiol 135:1838–1848
Feussner I, Wasternack C (2002) The LOX pathway. Annu Rev Plant Biol 53:275–297
Blée E (2002) Impact of phyto-oxylipins in plant defense. Trends Plant Sci 7:315–321
Howe GA, Schilmiller AL (2002) Oxylipin metabolism in response to stress. Curr Opin Plant Biol 5:230–236
Gerwick WH, Roberts MA, Vulpanovici A (1999) Biogenesis and biological function of marine algal oxylipins. Adv Exp Med Biol 447:211–218
Pohnert G, Boland W (2002) The oxylipin chemistry of attraction and defense in brown algae and diatoms. Nat Prod Rep 19:108–122
Guschina IA, Harwood JL (2006) Lipids and lipid metabolism in eukaryotic algae. Prog Lipid Res 45:160–186
Potin P (2008) Oxidative burst and related responses in biotic interactions of algae. In: Amsler CD (ed) Algal chemical ecology. Springer, Berlin, pp 245–271
Weinberger F (2007) Pathogen-induced defense and innate immunity in macroalgae. Biol Bull 213:290–302
Ianora A, Miralto A (2010) Toxigenic effects of diatoms on grazers, phytoplankton and other microbes: a review. Ecotoxicol 19:493–511
Bowler CP, Vardi A, Allen A (2009) Oceanographic and biogeochemical insights from diatom genomes. Ann Rev Mar Sci 2:333–365
Ribalet F, Wichard T, Pohnert G, Ianora A, Miralto A, Casotti R (2007) Age and nutrient limitation enhance polyunsaturated aldehyde production in marine diatoms. Phytochemistry 68:2059–2067
Andreou A, Brodhun F, Feussner I (2009) Biosynthesis of oxylipins in non-mammals. Prog Lipid Res 48:148–170
d’Ippolito G, Romano T, Caruso T, Spinella A, Cimino G, Fontana A (2003) Production of octadienal in the marine diatom Skeletonema costatum. Org Lett 5:885–887
Pohnert G, Adolph S, Wichard T (2004) Short synthesis of labeled and unlabeled 6Z,9Z,12Z,15-hexadecatetraenoic acid as metabolic probes for biosynthetic studies on diatoms. Chem Phys Lipids 131:159–166
d’Ippolito G, Cutignano A, Tucci S, Romano G, Cimino G, Fontana A (2006) Biosynthetic intermediates and stereochemical aspects of the aldehyde biosynthesis in the marine diatom Thalassiosira rotula. Phytochemistry 67:314–322
Barofsky A, Pohnert G (2007) Biosynthesis of polyunsaturated short chain aldehydes in the diatom Thalassiosira rotula. Org Lett 9:1017–1020
Wichard T, Pohnert G (2006) Formation of halogenated medium chain hydrocarbons by a lipoxygenase/hydroperoxide halolyase-mediated transformation in planktonic microalgae. J Am Chem Soc 128:7114–7115
d’Ippolito G, Cutignano A, Tucci S, Romano G, Cimino G, Miralto A, Fontana A (2004) The role of complex lipids in the synthesis of bioactive aldehydes of the marine diatom Skeletonema costatum. Biochim Biophys Acta 1686:100–107
Cutignano A, d’Ippolito G, Romano G, Lamari N, Cimino G, Febbraio F, Nucci R, Fontana A (2006) Chloroplastic galactolipids fuel the aldehyde biosynthesis in the marine diatom Thalassiosira rotula. Chembiochem 7:450–456
Staunton J, Weissman KJ (2001) Polyketide biosynthesis: a millennium review. Nat Prod Rep 18:380–416
Trench RK, Greene RW, Bystrom BG (1969) Chloroplasts as functional organelles in animal tissues. J Cell Biol 42:404–417
Green BJ, Li WY, Manhart JR, Fox TC, Summer EJ, Kennedy RA, Pierce SK, Rumpho ME (2000) Mollusc-algal chloroplast endosymbiosis. Photosynthesis, thylakoid protein maintenance, and chloroplast gene expression continue for many months in the absence of the algal nucleus. Plant Physiol 124:331–342
Pierce SK, Massey SE, Hanten JH, Curtis NE (2003) Horizontal transfer of functional nuclear genes between multicellular organisms. Biol Bull 204:237–240
Gavagnin M, Marin A, Mollo E, Crispino A, Villani G, Cimino G (1994) Secondary metabolites from Mediterranean Elysioidea: origin and biological role. Comp Biochem Physiol 108B:107–115
Cutignano A, Cimino G, Villani G, Fontana A (2009) Shaping the polypropionate biosynthesis in the solar powered mollusc Elysia viridis. Chembiochem 10:315–322
Muller M, He J, Hertweck C (2006) Dissection of the late steps in aureothin biosynthesis. Chembiochem 7:37–39
Fontana A (2006) Biogenetic proposals and biosynthetic studies on secondary metabolites of opisthobranch molluscs. In: Cimino G, Gavagnin M (eds) Molluscs: from chemo-ecological study to biotechnological application, vol 43, Progress in molecular and subcellular biology, subseries marine molecular biotechnology. Springer, Berlin
Manzo E, Ciavatta ML, Gavagnin M, Mollo E, Wahidulla S, Cimino G (2005) New gamma-pyrone propionates from the Indian ocean sacoglossan Placobranchus ocellatus. Tetrahedron Lett 46:465–468
Cueto M, D’Croz L, Matè JL, San-Martín A, Darias J (2005) Elysiapyrones from Elysia diomedea. Do such metabolites evidence an enzymatically assisted electrocyclization cascade for the biosynthesis of their bicyclo [18.2.0]octane core? Org Lett 7:415–418
Miller AK, Trauner D (2005) Mining the tetraene manifold: total synthesis of complex pyrones from Placobranchus ocellatus. Angew Chem Int Ed 44:4602–4606
Miller AK, Trauner D (2006) Mapping the chemistry of highly unsaturated pyrone polyketides. Synlett 14:2295–2316
Eade SJ, Walter MW, Byrne C, Odell B, Rodriguez R, Baldwin J, Adlington RM, Moses JE (2008) Biomimetic studies of pyrone-derived natural products: exploring chemical pathways from a unique polyketide precursor. J Org Chem 73(13):4830–4839
Brückner S, Baldwin JE, Moses J, Adlington RM, Cowley AR (2003) Mechanistic evidence supporting the biosynthesis of photodeoxytridachione. Tetrahedron Lett 44:7471–7473
Zuidema DR, Miller AK, Trauner D, Jones PB (2005) Photosynthesized conversion of 9,10-deoxytridachione to photodeoxytridachione. Org Lett 7:4959–4962
Diaz-Marrero A, Cueto M, D’Croz L, Darias J (2008) Validating an endoperoxide as a key intermediate in the biosynthesis of elysiapyrones. Org Lett 10:3057–3060
Ireland C, Faulkner DJ (1981) The metabolites of the marine molluscs Tridachiella diomedea and Tridachia crispata. Tetrahedron 37:233–240
Demming-Adams B, Gilmore AM, Adams WW (1996) In vitro function of carotenoids in higher plants. FASEB 10:403–412
Di Marzo V, Vardaro RR, De Petrocellis L, Villani G, Minei R, Cimino G (1991) Cyercenes, novel pyrones from the sacoglossan mollusc Cyerce cristallina. Tissue distribution, biosynthesis and possible involvement in defense and regenerative processes. Experientia 47:1221–1227
Vardaro RR, Di Marzo V, Crispino A, Cimino G (1991) Cyercenes, novel polypropionates pyrones from the autotomizing Mediterranean mollusc Cyerce cristallina. Tetrahedron 47:5569–5576
Vardaro RR, Di Marzo V, Marin A, Cimino G (1992) α- and γ-Pyrone-polypropionates from the Mediterranean ascoglossan mollusc Ercolania funerea. Tetrahedron 48:9561–9566
Zuidema DR, Jones PB (2006) Triplet photosensitization in cyercene A and related pyrones. J Photochem Photobiol B 83:137–145
Zuidema DR, Jones PB (2005) Photochemical relationships in sacoglossan polypropionates. J Nat Prod 68:481–486
Larsen TO, Perry NB, Andersen B (2003) Infectopyrone, a potential mycotoxin from Alternaria infectoria. Tetrahedron Lett 44:4511–4513
Proksch P, Ebel R, Edrada RA, Riebe F, Liu H, Diesel A, Bayer M, Li X, Lin WH, Grebenyuk V, Mueller WEG, Draeger S, Zuccaro AA, Schulz B (2008) Sponge-associated fungi and their bioactive compounds: the Suberites case. Bot Mar 51:209–218
Nair MSR, Carey ST (1975) Metabolites of Pyrenomycetes. II: nectriapyrone, an antibiotic monoterpenoid. Tetrahedron Lett 19:1655–1658
Debbab A, Aly AH, Edrada-Ebel R, Wray V, Müller WEG, Totzke F, Zirrgiebel U, Schächtele C, Kubbutat MHG, Lin WH, Mosaddak M, Hakiki A, Proksch P, Ebel R (2009) Bioactive metabolites from the endophytic fungus Stemphylium globuliferum isolated from Mentha pulegium. J Nat Prod 72:626–631
Pedras MSC, Chumala PB (2005) Phomapyrones from blackleg causing phytopathogenic fungi: isolation, structure determination, biosyntheses and biological activity. Phytochemistry 66:81–87
Cutignano A, Cimino G, Villani G, Fontana A (2009) Origin of C3-unit in placidenes: further insights into taxa divergence of polypropionate biosynthesis in marine molluscs and fungi. Tetrahedron 65:8161–8164
Molinski TF, Dalisay DF, Lievens SL, Saludes JP (2009) Drug development from marine natural products. Nat Rev Drug Discov 8:69–85
Jones AC, Gu L, Sorrels CM, Sherman DH, Gerwick WL (2009) New tricks from ancient algae: natural products biosynthesis in marine cyanobacteria. Curr Opin Chem Biol 13:216–223
Rein KS, Snyder RV (2006) The biosynthesis of polyketide metabolites by dinoflagellates. Adv Appl Microbiol 59:93–125
Author information
Authors and Affiliations
Corresponding authors
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2012 Springer Science+Business Media B.V.
About this entry
Cite this entry
Fontana, A., Manzo, E., Ciavatta, M.L., Cutignano, A., Gavagnin, M., Cimino, G. (2012). Biosynthetic Studies Through Feeding Experiments in Marine Organisms∗ . In: Fattorusso, E., Gerwick, W., Taglialatela-Scafati, O. (eds) Handbook of Marine Natural Products. Springer, Dordrecht. https://doi.org/10.1007/978-90-481-3834-0_17
Download citation
DOI: https://doi.org/10.1007/978-90-481-3834-0_17
Published:
Publisher Name: Springer, Dordrecht
Print ISBN: 978-90-481-3833-3
Online ISBN: 978-90-481-3834-0
eBook Packages: Biomedical and Life SciencesReference Module Biomedical and Life Sciences