Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Allen MA et al (2009) The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation. ISME J 3(9):1012–1035
Bada JL, Lazcano A (2002) Some like it hot, but not the first biomolecules. Science 296:1983–1982
Bakermans C et al (2006) Psychrobacter cryohalolentis sp. nov. and Psychrobacter arcticus sp. nov., isolated from Siberian permafrost. Int J Syst Evol Microbiol 56(6):1285–1291
Bakermans C, Tollaksen SL, Giometti CS, Wilkerson C, Tiedje JM, Thomashow MF (2007) Proteomic analysis of Psychrobacter cryohalolentis K5 during growth at subzero temperatures. Extremophiles 11(2):343–354
Berger F, Morellet N, Menu F, Potier P (1996) Cold shock and cold acclimation proteins in the psychrotrophic bacterium Arthrobacter globiformis SI55. J Bacteriol 178(11):2999–3007
Bergholz PW, Bakermans C, Tiedje JM (2009) Psychrobacter arcticus 273–4 uses resource efficiency and molecular motion adaptations for subzero temperature growth. J Bacteriol 191(7):2340
Burg D, Lauro FM, Williams T, Raftery M, Guilhaus M, Cavicchioli R (2010) Analyzing the hydrophobic proteome of the Antarctic archaeon Methanococcoides burtonii using differential solubility fractionation. J Proteome Res 9(2):664–676.
Campanaro S, Williams TJ, De Francisci D, Treu L, Lauro FM, Cavicchioli R (2010) Temperature-dependent global gene expression in the Antarctic archaeon, Methanococcoides burtonii. Environmental Microbiology (in press, accepted Sept 20)
Cavicchioli R (2006) Cold adapted archaea. Nat Rev Microbiol 4:331–343
Cavicchioli R (2007) Antarctic metagenomics. Microbiol Austr 28:98–103
Dalluge JJ, Hamamoto T, Horikoshi K, Morita RY, Stetter KO, McCloskey JA (1997) Posttranscriptional modification of tRNA in psychrophilic bacteria. J Bacteriol 179:1918–1923
Duchaud E et al (2007) Complete genome sequence of the fish pathogen Flavobacterium psychrophilum. Nat Biotechnol 25(7):763–769
Feller G, Gerday C (2003) Psychrophilic enzymes: hot topics in cold adaptation. Nature Rev Microbiol 1:200–208
Franzmann PD et al (1997) Methanogenium frigidum sp. nov., a psychrophilic, H2-using methanogen from Ace Lake, Antarctica. Int J Syst Bacteriol 47(4): 1068–1072
Gao H, Yang ZK, Wu L, Thompson DK, Zhou J (2006) Global transcriptome analysis of the cold shock response of Shewanella oneidensis MR-1 and mutational analysis of its classical cold shock proteins. J Bacteriol 188(12):4560
Giaquinto L, Curmi PMG, Siddiqui KS, Poljak A, DeLong E, DasSarma S, Cavicchioli R (2007) The structure and function of cold shock proteins in archaea. J Bacteriol 189:5738–5748
Gibson JAE, Miller MR, Davies NW, Neill GP, Nichols DS, Volkman JK (2005) Unsaturated diether lipids in the psychrotrophic archaeon Halorubrum lacusprofundi. Syst Appl Microbiol 28(1):19–26
Goodchild A, Saunders NFW, Ertan H, Raftery M, Guilhaus M, Curmi PMG, Cavicchioli R (2004a) A proteomic determination of cold adaptation in the Antarctic archaeon, Methanococcoides burtonii. Mol Microbiol 53(1):309–321
Goodchild A, Raftery M, Saunders NFW, Guilhaus M, Cavicchioli R (2004b) Biology of the cold adapted archaeon, Methanococcoides burtonii determined by proteomics using liquid chromatography-tandem mass spectrometry. J Proteome Res 3(6):1164–1176
Goodchild A, Raftery M, Saunders NFW, Guilhaus M, Cavicchioli R (2005) Cold adaptation of the Antarctic archaeon. Methanococcoides burtonii assessed by proteomics using ICAT. J Proteome Res 4(2):473–480
Hallam SJ et al (2006) Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum. Proc Natl Acad Sci 103(48):18296–18301
Hjerde E et al (2008) The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay. BMC Genomics 9(1):616
Hou S et al (2004) Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy. Proc Natl Acad Sci USA 101(52):18036–18041
Jiang W, Hou Y, Inouye M (1997) CspA, the major cold-shock protein of Escherichia coli, is an RNA chaperone. J Biol Chem 272(1):196
Kawamoto J, Kurihara T, Kitagawa M, Kato I, Esaki N (2007) Proteomic studies of an Antarctic cold-adapted bacterium, Shewanella livingstonensis Ac10, for global identification of cold-inducible proteins. Extremophiles 11(6):819–826
Kim JF et al (2008) Complete genome sequence of Leuconostoc citreum KM20. J Bacteriol 190(8):3093–3094
Kurihara T, Esaki N (2008) Proteomic studies of psychrophilic microorganisms. In: Margesin R, Schinner F, Marx J-C, Gerday C (eds) Psychrophiles: from Biodiversity to Biotechnology, Springer Verlag, Berlin Heidelberg. pp 333–344
Lim J, Thomas T, Cavicchioli R (2000) Low temperature regulated DEAD-box RNA helicase from the Antarctic archaeon Methanococcoides burtonii. J Mol Biol 297:553–567
Margesin R, Schinner F (1999) Cold-adapted organisms – ecology, physiology, enzymology and molecular biology. Springer, Berlin
Medigue C et al (2005) Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125. Genome Res 15(10):1325–1335
Methe BA et al (2005) The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses. Proc Natl Acad Sci USA 102(31):10913–10918
Murray AE, Grzymski JJ (2007) Diversity and genomics of Antarctic marine micro-organisms. Philos Trans R Soc Lond B Biol Sci 362:2259–2271
Nichols DS, Miller MR, Davies NW, Goodchild A, Raftery M, Cavicchioli R (2004) Cold adaptation in the Antarctic archaeon Methanococcoides burtonii involves membrane lipid unsaturation. J Bacteriol 186(24):8508–8515
Noon KR, Guymon R, Crain PF, McCloskey JA, Thomm M, Lim J, Cavicchioli R (2003) Influence of temperature on tRNA modification in Archaea: Methanococcoides burtonii (Topt 23°C) and Stetteria hydrogenophila (Topt 90°C). J Bacteriol 185:5483–5490
Preston CM et al (1996) A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov. Proc Natl Acad Sci USA 93(13):6241–6246
Price B (2009) Microbial genesis, life and death in glacial ice. Can J Microbiol 55:1–11
Qiu Y, Kathariou S, Lubman DM (2006) Proteomic analysis of cold adaptation in a Siberian permafrost bacterium-Exiguobacterium sibiricum 255–15 by two-dimensional liquid separation coupled with mass spectrometry. Proteomics 6(19):5221–5233
Rabus R, Bruchert V, Amann J, Konneke M (2002) Physiological response to temperature changes of the marine, sulfate-reducing bacterium Desulfobacterium autotrophicum. FEMS Microbiol Ecol 42:409–417
Rabus R et al (2004) The genome of Desulfotalea psychrophila, a sulfate-reducing bacterium from permanently cold Arctic sediments. Environ Microbiol 6(9):887–902
Reith M et al (2008) The genome of Aeromonas salmonicida subsp. salmonicida A449: insights into the evolution of a fish pathogen. BMC Genomics 9(1):427
Riley M et al (2008) Genomics of an extreme psychrophile. Psychromonas ingrahamii. BMC Genomics 9(1):210
Risso C et al (2009) Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens. BMC Genomics 10(1):447
Rodrigues DF, Ivanova N, He Z, Huebner M, Zhou J, Tiedje JM (2008) Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: a genome and transcriptome approach. BMC Genomics 9(1):547
Russell NJ (2008) Membrane components and cold sensing. psychrophiles: from biodiversity to biotechnology. Springer, Berlin, pp 177–190
Ting L, Williams TJ, Cowley MJ, Lauro FM, Guilhaus M, Raftery MJ, Cavicchioli R (2010) Cold adaptation in the marine bacterium, Sphingopyxis alaskensis assessed using quantitative proteomics. Environmental Microbiology doi:10.1111/j.1462-2920.2010.02235.x
Saunders NFW, Ng C, Raftery M, Guilhaus M, Goodchild A, Cavicchioli R (2006) Proteomic and computational analysis of secreted proteins with type I signal peptides from the Antarctic archaeon Methanococcoides burtonii. J Proteome Res 5:2457–2464
Saunders NFW et al (2003) Mechanisms of thermal adaptation revealed from the genomes of the Antarctic archaea Methanogenium frigidum and Methanococcoides burtonii. Genome Res 13:1580–1588
Saunders NFW, Goodchild A, Raftery M, Guilhaus M, Curmi PMG, Cavicchioli R (2005) Predicted roles for hypothetical proteins in the low-temperature expressed proteome of the Antarctic archaeon Methanococcoides burtonii. J Proteome Res 4(2):464–472
Seo JB, Kim HS, Jung GY, Nam MH, Chung JH, Kim JY, Yoo JS, Kim CW, Kwon O (2004) Psychrophilicity of Bacillus psychrosaccharolyticus: a proteomic study. Proteomics 4(11):3654
Suzuki Y, Haruki M, Takano K, Morikawa M, Kanaya S (2004) Possible involvement of an FKBP family member protein from a psychrotrophic bacterium Shewanella sp. SIB1 in cold-adaptation. Eur J Biochem 271(7):1372
Tasara T, Stephan R (2006) Cold stress tolerance of Listeria monocytogenes: a review of molecular adaptive mechanisms and food safety implications. J Food Prot 69(6):1473–84
Ting L, Cowley MJ, Hoon SL, Guilhaus M, Raftery MJ, Cavicchioli R (2009) Normalization and statistical analysis of quantitative proteomics data generated by metabolic labeling. Mol Cell Proteomics 8:2227–2242
Vezzi A et al (2005) Life at depth: photobacterium profundum genome sequence and expression analysis. Science 307(5714):1459–1461
Wang F et al (2007) A novel filamentous phage from the deep-sea bacterium Shewanella piezotolerans WP3 Is induced at low temperature. J Bacteriol 189(19):7151–7153
Wang F et al (2009) Role and regulation of fatty acid biosynthesis in the response of Shewanella piezotolerans WP3 to different temperatures and pressures. J Bacteriol 191(8):2574–2584
Wang F et al (2010) Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3. PLoS One 3(4):e1937, 9(2):640–652
Weiner RM et al (2010) Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2–40T. PLoS Genet 4(5):e1000087, 9(2):653–663
Williams T, Burg D, Raftery M, Poljak A, Guilhaus M, Pilak O, Cavicchioli R (2010a) A global proteomic analysis of the insoluble, soluble and supernatant fractions of the psychrophilic archaeon Methanococcoides burtonii Part I: the effect of growth temperature. J Proteome Res 9(2):640–652
Williams T, Burg D, Ertan H, Raftery M, Poljak A, Guilhaus M, Cavicchioli R (2010b) A global proteomic analysis of the insoluble, soluble and supernatant fractions of the psychrophilic archaeon Methanococcoides burtonii Part II: The effect of different methylated growth substrates. J Proteome Res 9(2):653–663
Yoshimune K, Galkin A, Kulakova L, Yoshimura T, Esaki N (2005) Cold-active DnaK of an Antarctic psychrotroph Shewanella sp. Ac10 supporting the growth of dnaK-null mutant of Escherichia coli at cold temperatures. Extremophiles 9(2):145–150
Zheng S, Ponder MA, Shih JYJ, Tiedje JM, Thomashow MF, Lubman DM (2007) A proteomic analysis of Psychrobacter arcticus 273–4 adaptation to low temperature and salinity using a 2-D liquid mapping approach. Electrophoresis 28(3):467–488
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2011 Springer
About this entry
Cite this entry
Lauro, F.M., Allen, M.A., Wilkins, D., Williams, T.J., Cavicchioli, R. (2011). Psychrophiles: Genetics, Genomics, Evolution. In: Horikoshi, K. (eds) Extremophiles Handbook. Springer, Tokyo. https://doi.org/10.1007/978-4-431-53898-1_42
Download citation
DOI: https://doi.org/10.1007/978-4-431-53898-1_42
Publisher Name: Springer, Tokyo
Print ISBN: 978-4-431-53897-4
Online ISBN: 978-4-431-53898-1
eBook Packages: Biomedical and Life SciencesReference Module Biomedical and Life Sciences