Introduction
Adaptation and specialization to harsh environments represent hallmarks of members of the Archaea and this was originally, besides the presence of unique metabolic pathways (i.e., methanogenesis), regarded as a typical archaeal feature. However, meanwhile a wide distribution of mostly uncultured members in ordinary habitats such as ocean and lake waters or soil has been proven and Archaea are known to play major roles in the global ecosystems (DeLong 1998; DeLong and Pace 2001; Francis et al. 2005; Leininger et al. 2006).
Some extremophiles survive and thrive at temperatures over 100°C or down to 0°C, in extremely alkaline (around pH 11) acidic waters (pH < 1), extremely saline environments (>30% (w/v) salts), or combinations thereof. Typical environments from which these Archaea have been isolated include rift vents in the deep sea (e.g., black smokers), geysers, hot acidic springs and sulfuric waters, or salt lakes. Life under such extreme conditions requires effective...
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References
Ahmed H, Tjaden B, Hensel R, Siebers B (2004) Embden-Meyerhof-Parnas and Entner-Doudoroff pathways in Thermoproteus tenax: metabolic parallelism or specific adaptation? Biochemical Society Trans 32:2–4
Ahmed H, Ettema TJ, Tjaden B, Geerling AC, Van der Oost J, Siebers B (2005) The semi-phosphorylative Entner-Doudoroff pathway in hyperthermophilic archaea – a re-evaluation. Biochem J 390:529–540
Albers SV, Jonuscheit M, Dinkelaker S, Urich T, Kletzin A, Tampe R, Driessen AJM, Schleper C (2006) Production of recombinant and tagged proteins in the hyperthermophilic Archaeon Sulfolobus solfataricus. Appl and Environm Microbiol 72(1):102–111
Albers SV, Driessen AJM (2008) Conditions for gene disruption by homologous recombination of exogenous DNA into the Sulfolobus solfataricus genome. Archaea 2:145–149
Albers SV, Birkeland N-K, Driessen AJM, Gertig S, Haferkamp P, Klenk H-P, Kouril T, Manica A, Pham TK, Ruoff P, Schleper C, Schomburg D, Sharkey KJ, Siebers B, Sierocinski P, Steuer R, Van der Oost J, Westerhoff HV, Wieloch P, Wright PC, Zaparty M (2009) SulfoSYS – Sulfolobus Systems Biology: towards a Silicon Cell Model for the central carbohydrate metabolism of the Archaeon Sulfolobus solfataricus under temperature variation. Biochem Soc Trans 37:58–64
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402
Andreesen JR, Gottschalk G (1969) The occurence of the modified Entner-Doudoroff pathway in Clostridium aceticum. Arch Microbiol 69:160–170
Angelov A, Fuetterer O, Valerius O, Braus GH, Liebl W (2005) Properties of the recombinant glucose⁄galactose dehydrogenase from the extreme thermoacidophile, Picrophilus torridus. FEBS J 272:1054–1062
Angelov A, Liebl W (2006) Insights into extreme thermoacidophily based on genome analysis of Picrophilus torridus and other thermoacidophilic archaea. J Biotechnol 126(1):3–10
Arguelles JC (2000) Physiological role of trehalose in bacteria and yeasts: a comparative analysis. Arch Microbiol 174:217–224
Auernik KS, Cooper CR, Kelly RM (2008a) Life in hot acid: pathway analyses in extremely thermoacidophilic archaea. Curr Opin Biotechnol 19:445–453
Auernik KS, Maezato Y, Blum PH, Kelly RM (2008b) The genome sequence of the metal-mobilizing, extremely thermoacidophilic archaeon Metallosphaera sedula provides insights into bioleaching-associated metabolism. Appl Environ Microbiol 74:682–92
Bartolucci S, Rella R, Guagliardi A, Raia CA, Gambacorta A, De Rosa M, Rossi M (1987) Malic enzyme from archaebacterium Sulfolobus solfataricus. Purification, structure, and kinetic properties. J Biol Chem 262:7725–7731
Berg IA, Kockelkorn D, Buckel W, Fuchs G (2007) A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in Archaea. Science 318:1782–1786
Brock TD, Brock KM, Belly RT, Weiss RL (1972) Sulfolobus: a new genus of sulfur-oxidizing bacteria living at low pH and high temperature. Arch Mikrobiol 84:54–68
Brouns SJJ, Walther J, Snijders APL, van de Werken HJG, Willemen HLDM, Worm P, de Vos MGJ, Andersson A, Lundgren M, Mazon HFM, van den Heuvel RHH, Nilsson P, Salmon L, de Vos WM, Wright PC, Bernander R, van der Oost J (2006) Identification of the missing links in prokaryotic pentose oxidation pathways- evidence for enzyme recruitment. J Biol Chem 281(37):27378–27388
Brunner NA, Siebers B, Hensel R (2001) Role of two different glyceraldehydes-3-phosphate dehydrogenases in controlling the reversible Embden-Meyerhof-Parnas pathway in Thermoproteus tenax: Regulation on protein and transcript level. Extremophiles 5:101–109
Bruegger K, Redder P, She Q, Confalonieri F, Zivanovic Y, Garrett RA (2002) Mobile elements in archaeal genomes. FEMS Microbiol Lett 10;206(2):131–41
Bruegger K, Torarinsson E, Redder P, Chen L, Garrett RA (2004) Shuffling of Sulfolobus genomes by autonomous and non-autonomous mobile elements. Biochem Soc Trans 32(Pt 2):179–83
Budgen N, Danson MJ (1986) Metabolism of glucose via a modified ENtner-Doudoroff pathway in the thermoacidophilic archaeabacterium Thermoplasma acidophilum. FEBS Lett 196:207–210
Camacho ML, Brown RA, Bonete MJ, Danson MJ, Hough DW (1995) Isocitrate dehydrogenases from Haloferax volcanii and Sulfolobus solfataricus: enzyme purification, characterisation and N-terminal sequence. FEMS Microbiol Lett 134:85–90
Cardona S, Remonsellez F, Guiliani N, Jerez CA (2001) The glycogen-bound polyphosphate kinase from Sulfolobus acidocaldarius is actually a glycogen synthase. Appl Environ Microbiol 67:4773–80
Chen L, Brügger K, Skovgaard M, Redder P, She Q, Torarinsson E, Greve B, Awayez M, Zibat A, Klenk HP, Garrett RA (2005) The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota. J Bacteriol 187:4992–9
Chen YS, Lee GC, Shaw JF (2006) Gene cloning, expression, and biochemical characterization of a recombinant trehalose synthase from Picrophilus torridus in Escherichia coli. J Agric Food Chem 20;54(19):7098–104
Ciaramella M, Napoli A, Rossi M (2005) Another extreme genome: how to live at pH 0. Trends Microbiol 13(2):49–51
Crowe JH, Crowe LM, Chapman D (1984) Preservation of membranes in anhydrobiotic organisms: the role of trehalose. Science 233:701–703
Crowe LM, Crowe JH (1992) Stabilization of dry liposomes by carbohydrates. Dev Biol Stand 74:285–294
Danson MJ, Black SC, Woodland DL, Wood PA (1985) Citric acid cycle enzymes of the archaebacteria: citrate synthase and succinate thiokinase. FEBS 179(1):120–124
Danson MJ, Hugh DW (1992) The enzymology of archaebacterial pathways of central metabolism. In: Danson MJ, Hough DW, Lunt GG (eds) The archaebacteria: biochemistry and biotechnology. Portland Press, London Chapel Hill, pp 1–21
Darland G, Brock TD, Samsonoff W, Conti SF (1970) A thermophilic acidophilic mycoplasm isolated from a coal refuse pile. Science 170:1416–1418
Darland G, Brock TD (1971) Bacillus acidocaldarius sp. nov., an acidophilic thermophilic spore-forming bacterium. J Gen Microbiol 67:9–15
DeLong EF (1998) Everything in moderation: archaea as non-extremophiles. Curr Opin Genet 6:649–54
DeLong EF, Pace NR (2001) Environmental diversity of Bacteria and Archaea. Syst Biol 50:470–478
De Rosa M, Gambacorta A, Nicolaus B, Giardina P, Poerio E, Buonocore V (1984) Glucose metabolism in the extreme thermoacidophilic archaebacterium Sulfolobus solfataricus. Biochem J 224:407–414
De Virgilio C, Hottiger T, Dominguez J, Boller T, Wiemken A (1994) The role of trehalose synthesis for the acquisition of thermotolerance in yeast I Genetic evidence that trehlose is a thermoprotectant. Eur J Biochem 219:179–186
Deng L, Zhu H, Chen Z, Liang YX, She Q (2009) Unmarked gene deletion and host–vector system for the hyperthermophilic crenarchaeon Sulfolobus islandicus. Extremophiles 13(4):735–746
Di Lernia I, Morana A, Ottombrino A, Fusco S, Rossi M, De Rosa M (1998) Enzymes from Sulfolobus shibatae for the production of trehalose and glucose from starch. Extremophiles 2:409–416
Elbein AD (1974) The metabolism of alpha-alpha trehalose. Adv Carbohyd Chem Biochem 30:227–256
Elzainy TA, Hassan MM, Allam AM (1973) New pathway for non-phosphorylated degradation of gluconate by Aspergillus niger. J Bacteriol 114:457–459
Ettema TJG, Makarova KS, Jellema GL, Gierman HJ, Koonin EV, Huynen MA, de Vos WM, van der Oost J (2004) Identification and functional verification of archaeal-type phosphoenolpyruvate carboxylase, a missing link in archaeal central carbohydrate metabolism. J Bacteriol 186(22):7754–7762
Ettema TJG, Ahmed H, Geerling ACM, Van der Oost J, Siebers B (2008) The non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (GAPN) of Sulfolobus solfataricus: a key-enzyme of the semi-phosphorylative branch of the Entner–Doudoroff pathway. Extremophiles 12:75–88
Francis CA, Roberts KJ, Beman JM, Santoro AE, Oakley BB (2005) Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. PNAS 102(41):14683–14688
Fröls S, Gordon PM, Panlilio MA, Schleper C, Sensen CW (2007) Elucidating the transcription cycle of the UV-inducible hyperthermophilic archaeal virus SSV1 by DNA microarrays. Virology 365:48–59
Fütterer O, Angelov A, Liesegang H, Gottschalk G, Schleper C, Schepers B, Dock C, Antranikian G, Liebl W (2004) Genome sequence of Picrophilus torridus and its implications for life around pH 0. PNAS 101(24):9091–9096
Gerlt JA, Babbitt PC (2000) Can sequence determine function? Genome Biol 1:0005.1–0005.10
Giæver HM, Styrvold OB, Kaasen I, Strom AR (1988) Biochemical and genetic characterization of osmoregulatory trehalose synthesis in Escherichia coli. J Bacteriol 170:2841–49
Goerisch H, Hartl T, Grossebüter W, Stezowski J (1985) Archaebacterial malate dehydrogenases. The enzymes from the thermoacidophilic organisms Sulfolobus acidocaldarius and Thermoplasma acidophilum show A-side stereospecificity for NAD+. Biochem J 226(3):885–888
Grogan DW (1989) Phenotypic characterization of the archaebacterial genus Sulfolobus: comparison of five wild-type strains. J Bacteriol 171:6710–6719
Gueguen Y, Rolland JL, Schroeck S, Flament D, Defretin S, Saniez MH, Dietrich J (2001) Characterization of the maltooligsyl trehalose synthase from the thermophilic archaeon Sulfolobus acidocaldricus. FEMS Microbiol Lett 194:201–206
Hansen T, Wendorff D, Schönheit P (2003) Bifunctional phosphoglucose/ phosphomannose isomerases from the Archaea Aeropyrum pernix and Thermoplasma acidophilum constitute a novel enzyme family within the phosphoglucose isomerase superfamily. J Biol Chem 279:2262–2272
Heath C, Posner MG, Aass HC, Upadhyay A, Scott DJ, Hough DW, Danson MJ (2007) The 2-oxoacid dehydrogenase multi-enzyme complex of the archaeon Thermoplasma acidophilum – recombinant expression, assembly and characterization. FEBS J 274(20):5406–5415
Helfert C, Gotsche S, Dahl M (1995) Cleavage of trehalose-phosphate in Bacillus subtilis is catalysed by a phospho-α (1-)-glucosidase encoded by the treA gene. Mol Microbiol 16:111–120
Hess M, Katzer M, Antranikian G (2008) Extremely thermostable esterases from the thermoacidophilic euryarchaeon Picrophilus torridus. Extremophiles 12:351–364
Hottiger T, Schmutz P, Wiemken A (1987) Heat-induced accumulation and futile cycling of trehalose in Saccharomyces cerevisiae. J Bacteriol 169:5518–5522
Huber G, Spinnler C, Gambacorta A, Stetter KO (1989) Metallosphaera sedula gen. and sp. nov. represents a new genus of aerobic, metalmobilizing, thermoacidophilic archaebacteria. Syst Appl Microbiol 12:38–47
Huegler M, Huber H, Stetter KO, Fuchs G (2003a) Autotrophic CO2 fixation pathways in archaea (Crenarchaeota). Arch Microbiol 179:160–173
Huegler M, Krieger RS, Jahn M, Fuchs G (2003b) Characterization of acetyl-CoA/propionyl-CoA carboxylase in Metallosphaera sedula. Carboxylating enzyme in the 3-hydroxypropionate cycle for autotrophic carbon fixation. Eur J Biochem 270:736–744
Huegler M, Fuchs G (2005) Assaying for the 3-hydroxypropionate cycle of carbon fixation. Methods Enzymol 397:212–221
Itoh T, Suzuki K, Sanchez PC, Nakase T (1999) Caldivirga maquilingensis gen. nov., sp. nov., a new genus of rod-shaped crenarchaeote isolated from a hot spring in the Philippines. Int J Syst Bacteriol 49:1157–63
Itoh T, Yoshikawa N, Takashina T (2007) Thermogymnomonas acidicola gen. nov., sp. nov., a novel thermoacidophilic, cell wall-less archaeon in the order Thermoplasmatales, isolated from a solfataric soil in Hakone, Japan. Int J Sys Evolution Microbiol 57:2557–2561
Janssen S, Schafer G, Anemuller S, Moll R (1997) A succinate dehydrogenase with novel structure and properties from the hyperthermophilic archaeon Sulfolobus acidocaldarius: genetic and biophysical characterization. J Bacteriol 179(17):5560–5569
JGI (2007) DOE Joint Genome Institute available at www.jgi.doe.gov/
Jones CE, Fleming TM, Cowan DA, Littlechild JA, Piper PW (1995) The phosphoglycerate kinase and glyceraldehyde-3-phosphtae dehydrogenase genes from the thermophilic archaeon Sulfolobus solfataricus overlap by 8-bp. Eur J Biochem 233:800–808
Jung JH, Lee SB (2005) Identification and characterization of Thermoplasma acidophilum 2-keto-3-deoxy-D-gluconate kinase: A new class of sugar kinases. Biotechnol Bioprocess Eng 10:535–539
Jung JH, Lee SB (2006) Identification and characterization of Thermoplasma acidophilum glyceraldehyde dehydrogenase: a new class of NADP+-specific aldehyde dehydrogenase. Biochem J 397:131–138
Kaasen I, Mc Dougall J, Strom AR (1994) Analysis of the otsBA operon for osmoregulatory trehalose synthesis in Escherichia coli and homology of the OtsA and OtsB proteins to the yeast trehalose-6-phosphate synthase/phosphatase complex. Gene 145:9–15
Kardinahl S, Schmidt CL, Hansen T, Anemueller S, Petersen A, Schaefer G (1999) The strict molybdate-dependence of glucose-degradation by the thermoacidophilic Sulfolobus acidocaldarius reveals the first crenarchaeotic molybdenum containing enzyme – an aldehyde oxidoreductase. Eur J Biochem 260:540–548
Karp PD (2004) Call for an enzyme genomics initiative. Genome Biol 5:401.1–401.3
Kawashima T, Amano N, Koike H, Makino S, Higuchi S, Kawashima-Ohya Y, Watanabe K, Yamazaki M, Kanehori K, Kawamoto T, Nunoshiba T, Yamamoto Y, Aramaki H, Makino K, Suzuki M (2000) Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium. Proc Natl Acad Sci USA 97(26):14257–62
Kawarabayasi Y, Hino Y, Horikawa H, Jin-No K, Takahashi M, Sekine M, Baba S-I, Ankai A, Kosugi H, Hosoyama A, Fukui S, Nagai Y, Nishijima K, Otsuka R, Nakazawa H, Takamiya M, Kato Y, Yoshizawa T, Tanaka T, Kudoh Y, Yamazaki J, Kushida N, Oguchi A, Aoki K-I, Masuda S, Yanagii M, Nishimura M, Yamagishi A, Oshima T, Kikuchi H (2001) Complete genome sequence of an aerobic thermoacidophilic crenarchaeon, Sulfolobus tokodaii strain7. DNA Res 8:123–140
Kehrer D, Ahmed H, Brinkman H, Siebers B (2007) The glycerate kinase of the hyperthermophilic archaeon T. tenax: New insights into phylogenetic distribution of physiological role of members of the three different families. BMC Genomics 8:301
Kim S, Lee SB (2005) Identification and characterization of Sulfolobus solfataricus D-gluconate dehydratase: a key enzyme in the non-phosphorylated Entner-Doudoroff pathway. Biochem J 387:271–280
Kim S, Lee SB (2006) Characterization of Sulfolobus solfataricus 2-Keto-3-deoxy-D-gluconate Kinase in the modified Entner-Doudoroff pathway. Biosci Biotechnol Biochem 70(6):1308–1316
Kobayashi KM, Kato Y, Miura M, Kettoku T, Komeda A, Iwamatsu (1996) Gene cloning and expression of new trehalose-producing enzymes from the hyperthermophilic archaeon in Sulfolobus solfataricus. Biosci Biotechnol Biochem 60(11):1882–5
Koenig H, Sorko R, Zillig W, Reiter WD (1982) Glycogen in thermoacidophilic archaebacteria of the genera Sulfolobus, Thermoproteus, Desulfurococcus and Thermococcus. Arch Microbiol 132:297–303
Kouril T, Zaparty M, Marrero J, Brinkmann H, Siebers B (2008) A novel trehalose synthesizing pathway in the hyperthermophilic Crenarchaeon Thermoproteus tenax: the unidirectional TreT pathway. Arch Microbiol 190(3):355–69
Lamble HJ, Heyer NI, Bull SD, Hough DW, Danson M (2003) Metabolic pathway promiscuity in the Archaeon Sulfolobus solfataricus revealed by studies on glucose dehydrogenase and 2-keto-3-deoxygluconate Aldolase. J Biol Chem 278(36):34066–34072
Lamble HJ, Theodossis A, Milburn CC, Taylor GL, Bull SD, Hough DW, Danson M (2005) Promiscuity in the part-phosphorylative Entner-Doudoroff pathway of the archaeon Sulfolobus solfataricus. FEBS Lett 579:6865–6869
Leininger S, Urich T, Schloter M, Schwark L, Qi J, Nicol GW, Prosser JI, Schuster SC, Schleper C (2006) Archaea predominate among ammonia-oxidizing prokaryotes in soils. Nature 442(7104):806–9
Luebben M, Schaefer G (1989) Chemiosmotic energy conversion of the archaebacterial thermoacidophile Sulfolobus acidocaldarius: oxidative phosphorylation and presence of an f0-related N, N′-dicyclohexylcarbodiimide-binding proteolipid. JBacteriol 171(11):6106–6116
Maréchal LR, Belocopitow E (1972) Metabolism of trehalose in Euglena gracilis I. Partial purification and some properties of trehalose phosphorylase. J Biol Chem 247:3223–3228
Martins LO, Huber R, Huber H, Stetter KO, Da Costa MS, Santos H (1997) Organic solutes in hyperthermophilic archaea. Appl Environ Microbiol 63(3):896–902
Martusewitsch E, Sensen CW, Schleper C (2000) High spontaneous mutation rate in the hyperthermophilic archaeon Sulfolobus solfataricus is mediated by transposable elements. J Bacteriol 182(9):2574–81
Maruta K, Mitsuzumi H, Nakada T, Kubota M, Chaen H, Fukuda S, Sugimoto T, Kurimoto M (1996) Cloning and sequencing of a cluster of genes encoding novel enzymes of trehalose biosynthesis from thermophilic archaebacterium Sulfolobus acidocaldarius. Biochim Biophys Acta 1291:177–181
Matsubara H, Goto K, Matsumura T, Mochida K, Iwaki M, Niwa M, Yamasato K (2002) Alicyclobacillus acidiphilus sp. nov., a novel thermo-acidophilic, ω-alicyclic fatty acid-containing bacterium isolated from acidic beverages. J Syst Evol Microbiol 52:1681–1685
Menendez C, Bauer Z, Huber H, Gad’on N, Stetter K-O, Fuchs G (1999) Presence of acetyl coenzyme A (CoA) carboxylase and propionyl-CoA carboxylase in autotrophic Crenarchaeota and indication for operation of a 3-hydroxypropionate cycle in autotrophic carbon fixation. J Bacteriol 181:1088–1098
Mizanur RM, Zea CJ, Pohl NL (2004) Unusually broad substrate tolerance of a heat-stable archaeal sugar nucleotidyltransferase for the synthesis of sugar nucleotides. J Am Chem Soc 126(49):15993–8
Mizanur RM, Griffin AK, Pohl NL (2008) Recombinant production and biochemical characterization of a hyperthermostable alpha-glucan/maltodextrin phosphorylase from Pyrococcus furiosus. Archaea 2:169–76
Mukund S, Adams MW (1995) Glyceraldehyde-3-phosphate ferredoxin oxidoreductase, a novel tungsten-containing enzyme with a potential glycolytic role in the hyperthermophilic Archaeon Pyrococcus furiosus. J Biol Chem 270(15):8389–8392
Musfeldt M, Selig M, Schoenheit P (1999) Acetyl coenzyme A synthetase (ADP forming) from the hyperthermophilic Archaeon Pyrococcus furiosus: identification, cloning, separate expression of the encoding genes acdAI and acdBI, in Escherichia coli, and in vitro reconstitution of the active heterotetrameric enzyme from its recombinant subunits. J Bacteriol 181(18):5885–5888
Nicolaus B, Gambacorta A, Basso AL, Riccio R, De Rosa M, Grant WD (1988) Trehalose in archaebacteria. System Appl Microbiol 10:215–217
Nishimasu H, Fushinobu S, Shoun H, Wakagi T (2006) Identification and characterization of an ATP-dependent hexokinase with broad substrate specificity from the hyperthermophilic archaeon Sulfolobus tokodaii. J Bacteriol 188(5):2014–2019
Noh M, Jung JH, Lee SB (2006) Purification and characterization of glycerate kinase from the thermoacidophilic Archaeon Thermoplasma acidophilum: An enzyme belonging to the second glycerate kinase family. Biotechnol Bioprocess Eng 11:344–350
Orita I, Yurimoto H, Hirai R et al (2005) The archaeon Pyrococcus horikoshii possesses a bifunctional enzyme for formaldehyde fixation via the ribulose monophosphate pathway. J Bacteriol 187(11):3636–42
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y (2006) The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the Archaeon Thermococcus kodakaraensis. J Bacteriol 188(13):4698–4704
Park HS, Park J-T, Kang HK, Cha H, Kim DS, Kim JW, Park K-H (2007) TreX from Sulfolobus solfataricus ATCC 35092 displays isoamylase and 4-alpha-glucanotransferase activities. Biosci Biotechnol Biochem 71:1348–1352
Potters MB, Solow BT, Bischoff KM, Graham DE, Lower BH, Helm R, Kennelly PJ (2003) Phosphoprotein with phosphoglycerate mutase activity from the Archaeon Sulfolobus solfataricus. J Bacteriol 185(7):2112–2121
Puchegger S, Redl B, Stoffler G (1990) Purification and properties of a thermostable fumarate hydratase from the archaeobacterium Sulfolobus solfataricus. J Gen Microbiol 136:1537–1541
Qu Q, Lee SJ, Boos W (2004) TreT, a novel trehalose glycosyl-transferring synthase of the hyperthermophilic archaeon Thermococcus litoralis. J Biol Chem 279:46
Rashid N, Imanaka H, Kanai T, Fukui T, Atomi H, Imanaka T (2002) A novel candidate for the true fructose-1, 6-bisphosphatase in Archaea. J Biol Chem 277(34):30649–30655
Rashid N, Imanaka H, Fukui T, Atomi H, Imanaka T (2004) Presence of a novel phosphopentomutase and a 2-deoxyribose5-phosphate aldolase reveals a metabolic link between pentoses and central carbon metabolism in the hyperthermophilic Archaeon Thermococcus kodakarensis. J Bacteriol 186:13
Rawlings DE, Johnson DB (2007) The microbiology of biomining: development and optimization of mineral-oxidizing microbial consortia. Microbiology 153:315–324
Ray WK, Keith SM, DeSantis AM, Hunt JP, Larson TJ, Helm RF, Kennelly PJ (2005) A phosphohexomutase from the Archaeon Sulfolobus solfataricus is covalently modified by phosphorylation on serine. J Bacteriol 187(12):4270–4275
Redder P, She Q, Garrett RA (2001) Non-autonomous mobile elements in the crenarchaeon Sulfolobus solfataricus. J Mol Biol 306(1):1–6
Reher M, Schönheit P (2006) Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily. FEBS Lett 580:1198–1204
Reher M, Bott M, Schönheit P (2006) Characterization of glycerate kinase (2-phosphoglycerate forming), a key enzyme of the nonphosphorylative Entner-Doudoroff pathway, from the thermoacidophilic euryarchaeon Picrophilus torridus. FEMS Microbiol Lett 259:113–119
Reher M, Gebhard S, Schoenheit P (2007) Glyceraldehyde-3-phosphate ferredoxin oxidoreductase (GAPOR) and nonphosphorylating glyceraldehyde-3-phosphate dehydrogenase (GAPN), keyenzymes of the respective modified Embden-Meyerhof pathways in the hyperthermophilic crenarchaeota Pyrobaculum aerophilum and Aeropyrum pernix. FEMS Microbiol Lett 273:196–205
Reno ML, Held NL, Fields CJ, Burke PV, Whitaker RJ (2009) Biogeography of the Sulfolobus islandicus pan-genome. Proc Natl Acad Sci USA 106:8605–8610
Reher M, Fuhrer T, Bott M, Schoenheit P (2010) The nonphosphorylative entner-doudoroff pathway in the thermoacidophilic euryarchaeon picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase. J Bacteriol 192(4): 964–974
Rimmele M, Boos W (1994) Trehalose-6-phosphat hydrolase of Escherichia coli. J Bacteriol 176:5654–5664
Ruepp A, Graml W, Santos-Martinez ML, Koretke KK, Volker C, Mewes HW, Frishman D, Stocker S, Lupas AN, Baumeister W (2000) The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum. Nature 407:508–13
Russo AD, Rullo R, Masullo M, Ianniciello G, Arcari P, Bocchini V (1995) Glyceraldehyde-3-phosphate dehydrogenase in the hyperthermophilic archaeon Sulfolobus solfataricus: characterization and significance in glucose metabolism. Biochem Mol Biol Int 36:123–135
Say RF, Fuchs G (2010) Fructose 1, 6-bisphosphate aldolase/phosphatase may be an ancestral gluconeogenic enzyme. Nature 464:1077–1081
Schleper C, Pühler G, Kühlmorgen B, Zillig W (1995a) Life at extremely low pH. Nature 375:741–742
Schleper C, Puehler G, Holz I, Gambacorta A, Janekovic D, Santarius U, Klenk HP, Zillig W (1995b) Picrophilus gen. nov., fam. nov.: a novel aerobic, heterotrophic, thermoacidophilic genus and family comprising archaea capable of growth around pH 0. J Bacteriol 177:7050–7059
Schleper C, Puhler G, Klenk HP, Zillig W (1996) Picrophilus oshimae and Picrophilus torridus fam. nov., gen. nov., sp. nov., two species of hyperacidophilic, thermophilic, heterotrophic, aerobic archaea. Int J Syst Bacteriol 46:814–816
Segerer A, Neuner AM, Kristjansson JK, Stetter KO (1986) Acidianus infernus gen. nov., sp. nov., and Acidianus brierleyi comb. nov.: facultatively aerobic, extremely acidophilic thermophilic sulfur-metabolizing archaebacteria. Int J Syst Bacteriol 36:559–564
Segerer A, Langworthy TA, Stetter KO (1988) Thermoplasma acidophilum and Thermoplasma volcanium sp. nov. from Solfatara fields. Syst Appl Microbiol 10:161–171
Serour E, Antranikian G (2002) Novel thermoactive glucoamylases from the thermoacidophilic Archaea Thermoplasma acidophilum, Picrophilus torridus and Picrophilus oshimae. Antonie Leeuwenhoek 81:73–83
She Q, Singh RK, Confalonieri F, Zivanovic Y, Allard G, Awayez MJ, Chan-Weiher CCY, Groth Clausen I, Curtis B-A, De Moors A, Erauso G, Fletcher C, Gordon PMK, Heikamp-de Jong I, Jeffries AC, Kozera CJ, Medina N, Peng X, Thi-Ngoc HP, Redder P, Schenk ME, Theriault C, Tolstrup N, Charlebois RL, Doolittle WF, Duguet M, Gaasterland T, Garrett RA, Ragan MA, Sensen CW, Van der Oost J (2001a) The complete genome of the crenarchaeon Sulfolobus solfataricus P2. PNAS 98(14):7835–7840
She Q, Peng X, Zillig W, Garrett RA (2001b) Gene capture in archaeal chromosomes. Nature 409(6819):478
Siebers B, Tjaden B, Michalke K, Dörr C, Ahmed H, Zaparty M, Gordon P, Sensen C, Zibat A, Klenk HP, Schuster SC, Hensel R (2004) Reconstruction of the central carbohydrate metabolism of Thermoproteus tenax by use of genomic and biochemical data. J Bacteriol 186:2179–2194
Siebers B, Schönheit P (2005) Unusual pathways and enzymes of central carbohydrate metabolism in Archaea. Curr Opin Microbiol 8:695–705
Sisignano M, Morbitzer D, Gägens J, Oldiges M, Soppa J (2009) A 2-oxoacid dehydrogenase complex of Haloferax volcanii is essential for growth on isoleucine but not the other branched chain amino acids. Microbiology epub ahead of print, doi:10.1099/mic.0.033449–0
Smith PF, Langworthy TA, Smith MR (1975) Polypeptide nature of growth requirement in Yeast extract for Thermoplasma acidophilum. J Bacteriol 124:884–892
Smith LD, Stevenson KJ, Hough DW, Danson MJ (1987) Citrate synthase from the thermophilic archaebacteria Thermoplasma acidophilum and Sulfolobus acidocaldarius. FEBS Lett 225(1–2):277–281
Snijders APL, Walther J, Peter S, Kinnman I, de Vos MGJ, van de Werken HJG, Brouns SJJ, van der Oost J, Wright PC (2006) Reconstruction of central carbon metabolism in Sulfolobus solafatricus using a two-dimensional gel electrophoresis map, stable isotope labelling and DNA microarray analysis. Proteomics 6(15):1518–1529
Soderberg T (2005) Biosythesis of ribose-5-phosphate and erythrose-4-phosphate in Archaea: a phylogenetic analysis of archaeal genomes. Archaea 1:347–352
Solow B, Bichoff KM, Zylka MJ, Kennelly PJ (1998) Archaeal phosphoproteins Identification of a hexosephosphate mutase and the a-subunit of succinyl-CoA synthetase in the extreme acidothermophile Sulfolobus solfataricus. Protein Sci 7:105–111
Strom AR, Kaasen I (1993) Trehalose metabolism in Escherichia coli: stress protection and stress regulation of gene expression. Mol Microbiol 8:05–210
Suzuki T, Iwasaki T, Uzawa T, Hara K, Nemoto N, Kon T, Ueki T, Yamagishi A, Oshima T (2002) Sulfolobus tokodaii sp. nov. (f. Sulfolobus sp. strain 7), a new member of the genus Sulfolobus isolated from Beppu Hot Springs, Japan. Extremophiles 6:39–44
Tjaden B, Plagens A, Dörr C, Siebers B, Hensel R (2006) Phosphoenolpyruvate synthetase and pyruvate phosphate dikinase of Thermoproteus tenax: key pieces in the puzzle of archaeal carbohydrate metabolism. Mol Microbiol 60:287–298
Tomlinson GA, Koch TK, Hochstein LI (1974) The metabolism of carbohydrates by extremely halophilic bacteria: glucose metabolism via a modified Entner-Doudoroff pathway. Can J Microbiol 20:1085–1091
Tsusaki K, Nishimoto T, Nakada T, Kubota M, Chaen H, Fukuda S, Sugimoto T, Kurimoto M (1997) Cloning and sequencing of trehalose synthase gene from Thermus aquaticus. Biochem Biophys Acta 1334:28–32
Uhrigshardt H, Walden M, John H, Anemüller S (2001) Purification and characterization of the first archaeal aconitase from the thermoacidophilic Sulfolobus acidocaldarius. Eur J Biochem 268:1760–1771
Uhrigshardt H, Walden M, John H, Petersen A, Anemüller S (2002) Evidence for an operative glyoxylate cycle in the thermoacidophilic crenarchaeon Sulfolobus acidocaldarius. FEBS Lett 513(2):223–229
Van de Vossenberg JLCM, Driessen AJM, Zillig W, Konings WN (1998) Bioenergetics and cytoplasmic membrane stability of the extremely acidophilic, thermophilic archaeon Picrophilus oshimae. Extremophiles 2:67–74
Van der Oost J, Siebers B (2007) The glycolytic pathways of Archaea: evolution by tinkering. In: Garrett RA, Klenk H-P (eds) Archaea: evolution, physiology and molecular biology, vol 22, 1st edn. MA, Blackwell, Malden, pp 247–260
Verhees CH, Kengen SW, Tuininga JE, Schut GJ, Adams MWW, De Vos WM, Van der Oost J (2003) The unique features of glycolytic pathways in Archaea. Biochem J 375:231–246, Erratum in: Biochem. J. (2004) 377:819-822
Wagner M, Berkner S, Ajon M, Driessen AJM, Albers SV (2009) Expanding and understanding the genetic toolbox of the hyperthermophilic genus Sulfolobus. Biochem Biochem Soc Trans 37:97–101
Whitaker RJ, Grogan DW, Taylor JW (2003) Geographic barriers isolate endemic populations of hyperthermophilic archaea. Science 301:976–8
Wisotzkey JD, Jurtshuk P, Fox GE, Deinhard G, Poralla K (1992) Comparative sequences analyses on the 16S rRNA (rDNA) of Bacillus acidocaldarius, Bacillus acidoterrestris, and Bacillus cycloheptanicus and proposal for creation of a new genus Alicyclobacillus gen. nov. Int J Syst Bacteriol 42:263–269
Woo EJ, Lee S, Cha H, Park JT, Yoon SM, Song HN, Park KH (2008) Structural insight into the bifunctional mechanism of the glycogen-debranching enzyme TreX from the Archaeon Sulfolobus solfataricus. J Biol Chem 283(42):28641–28648
Worthington P, Hoang V, Perez-Pomares F, Blum P (2003) Targeted disruption of the alpha-amylase gene in the hyperthermophilic archaeon Sulfolobus solfataricus. J Bacteriol 185:482–488
Zaparty M (2007) PhD thesis, University of Duisburg-Essen (Germany), http://duepublico.uni-duisburg- essen.de/
Zaparty M, Zaigler A, Stamme C, Soppa J, Hensel R, Siebers B (2008a) DNA microarray analysis of the central carbohydrate metabolism: glycolytic/gluconeogenic carbon switch in the hyperthermophilic Crenarchaeum Thermoproteus tenax. J Bacteriol 190(6):2231–2238
Zaparty M, Tjaden B, Hensel R, Siebers B (2008b) The central carbohydrate metabolism of the hyperthermophilic crenarchaeote Thermoproteus tenax: pathways and insights into their regulation. Arch Microbiol 190:231–245
Zaparty M, Esser D, Gertig S, Haferkamp P, Kouril T, Manica A, Pham TK, Reimann J, Schreiber K, Sierocinski P, van Wolferen M, von Jan M, Wieloch P, Albers SV, Driessen AJM, Klenk H-P, Schleper C, Schomburg D, van der Oost J, Wright PC, Siebers B (2010) “Hot standards” for the thermoacidophilic archaeon Sulfolobus solfataricus. Extremophiles 14:119–142
Zillig W, Stetter KO, Wunderl S, Schulz W, Priess H, Scholz I (1980) The Sulfolobus-“Caldariella” Group: taxonomy on the basis of the structure of DNA-dependent RNA polymerases. Arch Microbiol 125:259–269
Zillig W, Kletzin A, Schleper C, Holz I, Janekovic D, Hain J, Lanzendörfer M, Kristiansson JK (1994) Screening for sulfolobales, their plasmids, and their viruses in Islandic solfataras. Syst Appl Microbiol 16:606–62
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Zaparty, M., Siebers, B. (2011). Physiology, Metabolism, and Enzymology of Thermoacidophiles. In: Horikoshi, K. (eds) Extremophiles Handbook. Springer, Tokyo. https://doi.org/10.1007/978-4-431-53898-1_28
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