Abstract
Phylogenetically diverse chemoautotrophic Epsilonproteobacteria occur dominantly in various redoxclines such as deep-sea hydrothermal vents, stratified ocean, terrestrial sulfidic caves, and oil fields. Except the order Nautiliales, the taxonomy of chemoautotrophic Epsilonproteobacteria has not been well established. Nautiliaceae, the sole family within the order Nautiliales, consists of the genera Caminibacter, Nautilia, and Lebetimonas. Members of the family form deeply branched lineages in the 16S rRNA-based phylogenetic tree of Epsilonproteobacteria. They are Gram-negative motile rods with one or more polar flagella and do not form endospores. All members of the family are exclusively found in the close proximity to deep-sea hydrothermal vents. Members of the family are moderate thermophiles growing optimally between 40 °C and 60 °C. Under autotrophic conditions, Nautiliaceae members have an ability to grow anaerobically via respiratory S0 reduction with H2.
This is a preview of subscription content, log in via an institution.
Buying options
Tax calculation will be finalised at checkout
Purchases are for personal use only
Learn about institutional subscriptionsReferences
Alain K, Callac N, Guégan M, Lesongeur F, Crassous P, Cambon-Bonavita M, Querellou J, Prieur D (2009) Nautilia abyssi sp. nov., a thermophilic, chemolithoautotrophic, sulfur-reducing bacterium isolated from an East Pacific Rise hydrothermal vent. Int J Syst Evol Microbiol 59:1310–1315
Alain K, Querellou J, Lesongeur F, Pignet P, Crassous P, Raguénes G, Cueff V, Cambon-Bonavita M (2002) Caminibacter hydrogeniphilus gen. nov., sp. nov., a novel thermophilic, hydrogen-oxidizing bacterium isolated from an East Pacific Rise hydrothermal vent. Int J Syst Evol Microbiol 52:1317–1323
Anderson I, Sikorski J, Zeytun A, Nolan M, Lapidus A, Lucas S, Hammon N, Deshpande S, Cheng J, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, Huntemann M, Mavromatis K, Ovchinikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Brambilla E, Ngatchou-Djao O, Rohde M, Tindall B, Göker M, Detter J, Woyke T, Bristow J, Eisen J, Markowitz V, Hugenholtz P, Klenk H, Kyrpides N (2011) Complete genome sequence of Nitratifractor salsuginis type strain (E9I37-1). Stand Genomic Sci 4:322–330
Balch W, Fox G, Magrum L, Woese C, Wolfe R (1979) Methanogens: reevaluation of a unique biological group. Microbiol Rev 43:260–296
Campbell B, Jeanthon C, Kostka J, Luther C, Cary S (2001) Growth and phylogenetic properties of novel bacteria belonging to the epsilon subdivision of the Proteobacteria enriched from Alvinella pompejana and deep-sea hydrothermal vents. Appl Environ Microbiol 67:4566–4572
Campbell B, Smith J, Hanson T, Klotz M, Stein L, Lee C, Wu D, Robinson J, Khouri H, Eisen J, Cary S (2009) Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola. PLoS Genet 5:e1000362
Corre E, Reysenbach A-L, Prieur D (2001) ε-Proteobacterial diversity from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge. FEMS Microbiol Lett 205:329–335
Giovannelli D, Ferriera S, Johnson J, Kravitz S, Pérez-Rodríguez I, Ricci J, O’Brien C, Voordeckers J, Bini E, Vetriani C (2011) Draft genome sequence of Caminibacter mediatlanticus strain TB-2, an epsilonproteobacterium isolated from a deep-sea hydrothermal vent. Stand Genomic Sci 5:135–143
Grote J, Schott T, Bruckner C, Glöckner F, Jost G, Teeling H, Labrenz M, Jürgens K (2012) Genome and physiology of a model Epsilonproteobacterium responsible for sulfide detoxification in marine oxygen depletion zones. Proc Natl Acad Sci USA 109:506–510
Haddad A, Camacho F, Durand P, Cary S (1995) Phylogenetic characterization of the epibiotic bacteria associated with the hydrothermal vent polychaete Alvinella pompejana. Appl Environ Microbiol 61:1679–1687
Miroshnichenko M, Kostrikina N, L’Haridon S, Jeanthon C, Hippe H, Stackebrandt E, Bonch-Osmolovskaya E (2002) Nautilia lithotrophica gen. nov., sp. nov., a thermophilic sulfur-reducing ε-proteobacterium isolated from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 52:1299–1304
Miroshnichenko M, L’Haridon S, Schumann P, Spring S, Bonch-Osmolovskaya E, Jeanthon C, Stackebrandt E (2004) Caminibacter profundus sp. nov., a novel thermophile of Nautiliales ord. nov. within the class ‘Epsilonproteobacteria’, isolated from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 54:41–45
Moyer C, Dobbs F, Karl D (1995) Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount. Hawaii Appl Environ Microbiol 61:1555–1562
Nakagawa S, Inagaki F, Takai K, Horikoshi K, Sako Y (2005a) Thioreductor micantisoli gen. nov., sp. nov., a novel mesophilic, sulfur-reducing chemolithoautotroph within the ε-Proteobacteria isolated from hydrothermal sediments in the Mid-Okinawa Trough. Int J Syst Evol Microbiol 55:599–605
Nakagawa S, Takai K, Inagaki F, Chiba H, Ishibashi J, Kataoka S, Hirayama H, Nunoura T, Horikoshi K, Sako Y (2005b) Variability in microbial community and venting chemistry in a sediment-hosted backarc hydrothermal system: Impacts of subseafloor phase-separation. FEMS Microbiol Ecol 54:141–155
Nakagawa S, Takai K, Inagaki F, Hirayama H, Nunoura T, Horikoshi K, Sako Y (2005c) Distribution, phylogenetic diversity and physiological characteristics of epsilon-Proteobacteria in a deep-sea hydrothermal field. Environ Microbiol 7:1619–1632
Nakagawa S, Takai K (2008) Deep-sea vent chemoautotrophs: diversity, biochemistry and ecological significance. FEMS Microbiol Ecol 65:1–14
Nakagawa S, Takaki Y (2009) Nonpathogenic Epsilonproteobacteria. Encycl Life Sci a0021895. doi: 10.1002/9780470015902.a0021895
Nakagawa S, Takaki Y, Shimamura S, Reysenbach A-L, Takai K, Horikoshi K (2007) Deep-sea vent epsilon-proteobacterial genomes provide insights into emergence of pathogens. Proc Natl Acad Sci USA 104:12146–12150
Pérez-Rodríguez I, Ricci J, Voordeckers J, Starovoytov V, Vetriani C (2010) Nautilia nitratireducens sp. nov., a thermophilic, anaerobic, chemosynthetic, nitrate-ammonifying bacterium isolated from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 60:1182–1186
Polz M, Cavanaugh C (1995) Dominance of one bacterial phylotype at a Mid-Atlantic Ridge hydrothermal vent site. Proc Natl Acad Sci USA 92:7232–7236
Reysenbach A-L, Longnecker K, Kirshtein J (2000) Novel bacterial and archaeal lineages from an in situ growth chamber deployed at a Mid-Atlantic Ridge hydrothermal vent. Appl Environ Microbiol 66:3798–3806
Sievert S, Scott K, Klotz M, Chain P, Hauser L, Hemp J, Hügler M, Land M, Lapidus A, Larimer F, Lucas S, Malfatti S, Meyer F, Paulsen I, Ren Q, Simon J, The USF Genomics Class (2008) The genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans. Appl Environ Microbiol 74:1145–1156
Sikorski J, Munk C, Lapidus A, Ngatchou Djao O, Lucas S, Glavina Del Rio T, Nolan M, Tice H, Han C, Cheng J, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Sims D, Meincke L, Brettin T, Detter J, Chen A, Palaniappan K, Land M, Hauser L, Chang Y, Jeffries C, Rohde M, Lang E, Spring S, Göker M, Woyke T, Bristow J, Eisen J, Markowitz V, Hugenholtz P, Kyrpides N, Klenk H (2010) Complete genome sequence of Sulfurimonas autotrophica type strain (OK10). Stand Genomic Sci 3:194–202
Smith J, Campbell B, Hanson T, Zhang C, Cary S (2008) Nautilia profundicola sp. nov., a thermophilic, sulfur-reducing epsilonproteobacterium from deep-sea hydrothermal vents. Int J Syst Evol Microbiol 58:1598–1602
Stamatakis A, Hoover P, Rougemont J (2008) A rapid bootstrap algorithm for the RAxML Web servers. Syst Biol 57:758–771
Stetter KO, König H, Stackebrandt E (1983) Pyrodictium gen. nov., a new genus of submarine disc-shaped sulfur-reducing Archaebacteria growing optimally at 105 °C. Syst Appl Microbiol 4:535–551
Takai K, Hirayama H, Nakagawa T, Suzuki Y, Nealson K, Horikoshi K (2005) Lebetimonas acidiphila gen. nov., sp. nov., a novel thermophilic, acidophilic, hydrogen-oxidizing chemolithoautotroph within the ‘Epsilonproteobacteria’, isolated from a deep-sea hydrothermal fumarole in the Mariana Arc. Int J Syst Evol Microbiol 55:183–189
Takai K, Inagaki F, Nakagawa S, Hirayama H, Nunoura T, Sako Y, Nealson K, Horikoshi K (2003) Isolation and phylogenetic diversity of members of previously uncultivated ε-Proteobacteria in deep-sea hydrothermal fields. FEMS Microbiol Lett 218:167–174
Takai K, Oida H, Suzuki Y, Hirayama H, Nakagawa S, Nunoura T, Inagaki F, Nealson K, Horikoshi K (2004) Spatial distribution of marine crenarchaeota group I in the vicinity of deep-sea hydrothermal systems. Appl Environ Microbiol 70:2404–2413
Voordeckers J, Starovoytov V, Vetriani C (2005) Caminibacter mediatlanticus sp. nov., a thermophilic, chemolithoautotrophic, nitrate-ammonifying bacterium isolated from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge. Int J Syst Evol Microbiol 55:773–779
Yarza P, Ludwig W, Euzéby J, Amann R, Schleifer KH, Glöckner FO, Rosselló-Móra R (2010) Update of the all-species living tree project based on 16S and 23S rRNA sequence analyses. Syst Appl Microbiol 33:291–299
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2014 Springer-Verlag Berlin Heidelberg
About this entry
Cite this entry
Nakagawa, S., Takai, K. (2014). The Family Nautiliaceae: The Genera Caminibacter, Lebetimonas, and Nautilia. In: Rosenberg, E., DeLong, E.F., Lory, S., Stackebrandt, E., Thompson, F. (eds) The Prokaryotes. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-39044-9_276
Download citation
DOI: https://doi.org/10.1007/978-3-642-39044-9_276
Published:
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-39043-2
Online ISBN: 978-3-642-39044-9
eBook Packages: Biomedical and Life SciencesReference Module Biomedical and Life Sciences