Skip to main content
SpringerLink
Log in

Kinetics: Simulation and Analysis

  • Living reference work entry
  • First Online:
Encyclopedia of Biophysics

  • 182 Accesses

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Log in via an institution

Institutional subscriptions

References

  • Barshop BA, Wrenn RF, Frieden C (1983) Analysis of numerical methods for computer simulation of kinetic processes: development of KINSIM – a flexible, portable system. Anal Biochem 130:134–145

    Article  CAS  Google Scholar 

  • Bernasconi CF (1976) Relaxation kinetics. Academic, New York

    Google Scholar 

  • Billo EJ (2007) Excel for scientists and engineers numerical methods. Wiley-Interscience, Hoboken

    Book  Google Scholar 

  • Capellos C, Bielski BH (1972) Kinetic systems: mathematical description of chemical kinetics in solution. Wiley, New York/London/Sidney/Toronto

    Google Scholar 

  • Gear CW (1971) Numerical initial value problems in ordinary differential equations. Prentice-Hall, Englewood Cliffs

    Google Scholar 

  • Gutfreund H, Ranatunga KW (1999) Simulation of molecular steps in muscle force generation. Proc R Soc Lond B Biol Sci 266:1471–1475

    Article  CAS  Google Scholar 

  • Hoops S, Sahle S, Gauges R, Lee C, Pahle J, Simus N et al (2006) COPASI–a complex pathway simulator. Bioinformatics 22:3067–3074

    Article  CAS  Google Scholar 

  • Jencks WP (1987) Catalysis in chemistry and enzymology. Dover, New York

    Google Scholar 

  • Johnson KA (2009) Fitting enzyme kinetic data with KinTek global kinetic explorer. Methods Enzymol 467:601–626

    Article  CAS  Google Scholar 

  • Johnson KA, Simpson ZB, Blom T (2009a) Fitspace explorer: an algorithm to evaluate multidimensional parameter space in fitting kinetic data. Anal Biochem 387:30–41

    Article  CAS  Google Scholar 

  • Johnson KA, Simpson ZB, Blom T (2009b) Global kinetic explorer: a new computer program for dynamic simulation and fitting of kinetic data. Anal Biochem 387:20–29

    Article  CAS  Google Scholar 

  • Kuzmic P (1996) Program DYNAFIT for the analysis of enzyme kinetic data: application to HIV proteinase. Anal Biochem 237:260–273

    Article  CAS  Google Scholar 

  • Kuzmic P (2009) DynaFit – a software package for enzymology. Methods Enzymol 467:247–280

    Article  CAS  Google Scholar 

  • Kuzmic P, Lorenz T, Reinstein J (2009) Analysis of residuals from enzyme kinetic and protein folding experiments in the presence of correlated experimental noise. Anal Biochem 395:1–7

    Article  CAS  Google Scholar 

  • Otto SR, Denier JP, MyiLibrary L (2005) An introduction to programming and numerical methods in MATLAB. Springer, London

    Google Scholar 

  • Press WH, Flannery BP, Teukolsky SA, Vetterling WT (1989) Numerical recipes in Pascal; the art of scientific computing. Cambridge University Press, Cambridge

    Google Scholar 

  • Price KV, Lampinen J, Storn RM, MyiLibrary L (2005) Differential evolution a practical approach to global optimization. Springer, Berlin

    Google Scholar 

  • Steinfeld JI, Francisco JS, Hase WL (1989) Chemical kinetics and dynamics. Prentice-Hall, Englewood Cliffs. 07632

    Google Scholar 

  • Zimmerle CT, Frieden C (1989) Analysis of progress curves by simulations generated by numerical integration. Biochem J 258:381–387

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

  1. Department of Biomolecular Mechanisms, Max-Planck-Institute for Medical Research, Heidelberg, Germany

    Jochen Reinstein

Authors
  1. Jochen Reinstein
    View author publications

    You can also search for this author in PubMed Google Scholar

Corresponding author

Correspondence to Jochen Reinstein .

Editor information

Editors and Affiliations

  1. University Leicester MRC Centre, Leicester, United Kingdom

    Gordon Roberts

  2. Dept Biochemistry, University of Oxford, Oxford, United Kingdom

    Anthony Watts

Section Editor information

  1. Department of Chemistry and Biochemistry, University of California at Santa Cruz, Santa Cruz, CA, USA

    Clive R. Bagshaw

Rights and permissions

Reprints and permissions

Copyright information

© 2018 European Biophysical Societies' Association (EBSA)

About this entry

Check for updates. Verify currency and authenticity via CrossMark

Cite this entry

Reinstein, J. (2018). Kinetics: Simulation and Analysis. In: Roberts, G., Watts, A. (eds) Encyclopedia of Biophysics. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-35943-9_66-1

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-35943-9_66-1

  • Received:

  • Accepted:

  • Published:

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-35943-9

  • Online ISBN: 978-3-642-35943-9

  • eBook Packages: Springer Reference Biomedicine and Life SciencesReference Module Biomedical and Life Sciences

Publish with us

Policies and ethics

Search

Navigation