Abstract
The family Clostridiaceae, containing beside the type genus Clostridium more than 30 additional genera of the Firmicutes, constitutes a physiologically and phylogenetically heterogeneous taxon, which are generally monospore-forming, anaerobic Gram-positive-staining rods, with meso-diaminopimelic acid as the diagnostic diamino acid in their peptidoglycan. Morphological variations, such as clusters consisting of multiples of four cells (Sarcina) and cells with multiple spores (Anaerobacter) or no spores, do occur. Many Clostridium species which do not belong to the authentic genus defined by the type species Clostridium butyricum are scattered among validly named Clostridiaceae genera and are taxonomically treated as “incertae sedis.” This brief overview concentrates on genera and species described since 2006, which are not covered in the chapter Clostridiaceae in Bergey’s Manual of Systematic Bacteriology, 2nd edition.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Barcenilla A, Pryde SE, Martin JC, Duncan SH, Stewart CS, Henderson C, Flint HJ (2000) Phylogenetic relationships of butyrate-producing bacteria from the human gut. Appl Environ Microbiol 66:1654–1661
Chen S, Niu L, Zhang Y (2010) Saccharofermentans acetigenes gen. nov., sp. nov., an anaerobic bacterium isolated from sludge treating brewery wastewater. Int J Syst Evol Microbiol 60:2735–2738
Clavel T, Lippman R, Gavini F, Doré J, Blaut M (2007) Clostridium saccharogumia sp. nov. and Lactonifactor longoviformis gen. nov., sp. nov., two novel human faecal bacteria involved in the conversion of the dietary phytoestrogen secoisolariciresinol diglucoside. Syst Appl Microbiol 30, 16–26. Validation List no. 115. Int J Syst Evol Microbiol 57:893–897
Collins MD, Lawson PA, Willems A, Cordoba JJ, Fernandez-Garayzabal J, Garcia P, Cai J, Hippe H, Farrow JAE (1994) The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations. Int J Syst Bacteriol 44:812–826
Crespo C, Pozzo T, Nordberg Karlsson E, Alvarez MT, Mattiasson B (2012) Caloramator boliviensis sp. nov., a thermophilic, ethanol-producing bacterium isolated from a hot spring. Int J Syst Evol Microbiol 62:1679–1686
Eeckhaut V, Van ImmerseeL F, Teirlynck E, Pasmans F, Fievez V, Snauwaert C, Haesebrouck F, Ducatelle R, Louis P, Vandamme P (2008) Butyricicoccus pullicaecorum gen. nov., sp. nov., an anaerobic, butyrate-producing bacterium isolated from the caecal content of a broiler chicken. Int J Syst Evol Microbiol 58:2799–2802
Fang MX, Zhang WW, Zhang YZ, Tan HQ, Zhang XQ, Wu M, Zhu XF (2012) Brassicibacter mesophilus gen. nov., sp. nov., a strictly anaerobic bacterium isolated from food industry wastewater. Int J Syst Evol Microbiol 62:3018–3023
Fisher E, Dawson AM, Polshyna G, Lisak J, Crable B, Perera E, Ranganathan M, Thangavelu M, Basu P, Stolz JF (2008) Transformation of inorganic and organic arsenic by Alkaliphilus oremlandii sp. nov. strain OhILAs. Ann N Y Acad Sci, 1125, 230–241 Validation List no 127 (2009). Int J Syst Evol Microbiol 59:923–925
Fox GE, Stackebrandt E, Hespell RB, Gibson J, Maniloff J, Dyer T, Wolfe RS, Balch W, Tanner R, Magrum L, Zablen LB, Blakemore R, Gupta R, Luehrsen KR, Bonen L, Lewis BJ, Chen KN, Woese CR (1980) The phylogeny of prokaryotes. Science 209:457–463
Fraj B, Ben Hania W, Postec A, Hamdi M, Ollivier B, Fardeau ML (2013) Fonticella tunisiensis gen. nov., sp. nov., isolated from a hot spring. Int J Syst Evol Microbiol 63:1947–1950
Goodsir J (1842) History of a case in which a fluid periodically ejected from the stomach contained vegetable organisms of an undescribed form. Edinb Med Surg J 57:430–443
Jeong H, Lim YW, Yi H, Sekiguchi Y, Kamagata Y, Chun J (2007) Anaerosporobacter mobilis gen. nov., sp. nov., isolated from forest soil. Int J Syst Evol Microbiol 57:1784–1787
Klouche N, Fardeau ML, Lascourrèges JF, Cayol JL, Hacene H, Thomas P, Magot M (2007) Geosporobacter subterraneus gen. nov., sp. nov., a spore-forming bacterium isolated from a deep subsurface aquifer. Int J Syst Evol Microbiol 57:1757–1761
Lapage SP, Sneath PHA, Lessel EF, Skerman VBD, Seeliger HPR, Clark WA (1992) International code of nomenclature of bacteria: bacteriological code, 1990 revision. ASM Press, Washington, DC
Liebgott PP, Joseph M, Fardeau ML, Cayol JL, Falsen E, Chamkh F, Qatibi AI, Labat M (2008) Clostridiisalibacter paucivorans gen. nov., sp. nov., a novel moderately halophilic bacterium isolated from olive mill wastewater. Int J Syst Evol Microbiol 58:61–67
Niu L, Song L, Liu X, Dong X (2009) Tepidimicrobium xylanilyticum sp. nov., an anaerobic xylanolytic bacterium, and emended description of the genus Tepidimicrobium. Int J Syst Evol Microbiol 59:2698–2701
Ogg CD, Patel BKC (2009a) Caloramator australicus sp. nov., a thermophilic, anaerobic bacterium from the Great Artesian Basin of Australia. Int J Syst Evol Microbiol 59:95–101
Ogg CD, Patel BKC (2009b) Thermotalea metallivorans gen. nov., sp. nov., a thermophilic, anaerobic bacterium from the Great Artesian Basin of Australia aquifer. Int J Syst Evol Microbiol 59:964–971
Ogg CD, Patel BKC (2010) Fervidicella metallireducens gen. nov., sp. nov., a thermophilic, anaerobic bacterium from geothermal waters. Int J Syst Evol Microbiol 60:1394–1400
Ogg CD, Patel BKC (2011) Caloramator mitchellensis sp. nov., a thermoanaerobe isolated from the geothermal waters of the Great Artesian Basin of Australia, and emended description of the genus Caloramator. Int J Syst Evol Microbiol 61:644–653
Prazmowski A (1880) Untersuchung über die Entwickelungsgeschichte und Fermentwirkung einiger Bacterien-Arten. Inaugural Dissertation. Hugo Voigt, Leipzig pp 1–58
Rezgui R, Ben Ali Gam Z, Ben Hamed S, Fardeau ML, Cayol JL, Maaroufi A, Labat M (2011) Sporosalibacterium faouarense gen. nov., sp. nov., a moderately halophilic bacterium isolated from oil-contaminated soil. Int J Syst Evol Microbiol 61:99–104
Rezgui R, Maaroufi A, Fardeau ML, Ben Ali Gam Z, CayolL JL, Ben Hamed S, Labat M (2012) Anaerosalibacter bizertensis gen. nov., sp. nov., a halotolerant bacterium isolated from sludge. Int J Syst Evol Microbiol 62:2469–2474
Rubiano-Labrador C, Baena S, Díaz-Cárdenas C, Patel BKC (2013) Caloramator quimbayensis sp. nov., an anaerobic, moderately thermophilic bacterium isolated from a terrestrial hot spring. Int J Syst Evol Microbiol 63:1396–1402
Shiratori H, Ohiwa H, Ikeno H, Ayame S, Kataoka N, Miya A, Beppu T, Ueda K (2008) Lutispora thermophila gen. nov., sp. nov., a thermophilic, spore-forming bacterium isolated from a thermophilic methanogenic bioreactor digesting municipal solid wastes. Int J Syst Evol Microbiol 58:964–969
Slobodkin AI, Tourova TP, Kostrikina NA, Lysenko AM, German KE, Bonch-Osmolovskaya E, Birkeland NK (2006) Tepidimicrobium ferriphilum gen. nov., sp. nov., a novel moderately thermophilic, FeIII-reducing bacterium of the order Clostridiales. Int J Syst Evol Microbiol 56:369–372
Stackebrandt E (2015) Family Gracilibacteraceae and transfer of the genus Lutispora into Gracilibacteraceae. In. Rosenberg E, DeLong EF, Lory S, Stackebrandt E, Thompson F (eds) The Prokaryotes, Springer, New York
Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688–2690
Watthanalamloet A, Tachaapaikoon C, Lee YS, Kosugi A, Mori Y, Tanasupawat S, Kyu KL, Ratanakhanokchai K (2012) Cellulosibacter alkalithermophilus gen. nov., sp. nov. an anaerobic alkalithermophilic, cellulolytic-xylanolytic bacterium isolated from soil of a coconut garden. Int J Syst Evol Microbiol 62:2330–2335
Wiegel J (2009) Family I Clostridiaceae. In: de Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer K-H, Whitman WB (eds) Bergey’s manual of systematic bacteriology, vol 3, 2nd edn. Springer, New York, pp 736–738
Wu XY, ShiKL XXW, Wu M, Oren A, Zhu XF (2010) Alkaliphilus halophilus sp. nov., a strictly anaerobic and halophilic bacterium isolated from a saline lake, and emended description of the genus Alkaliphilus. Int J Syst Evol Microbiol 60:2898–2902
Yarza P, Ludwig W, Euzéby J, Amann R, Schleifer K-H, Glöckner FO, Rosselló-Móra R (2010) Update of the All-species living-tree project based on 16S and 23S rRNA sequence analyses. Syst Appl Microbiol 33:291–299
Zhang K, Song L, Dong X (2010) Proteiniclasticum ruminis gen. nov., sp. nov., a strictly anaerobic proteolytic bacterium isolated from yak rumen. Int J Syst Evol Microbiol 60:2221–2225
Zhang YZ, Fang MX, Zhang WW, Li TT, Wu M, Zhu XF (2013) Salimesophilobacter vulgaris gen. nov., sp. nov., an anaerobic bacterium isolated from paper-mill wastewater. Int J Syst Evol Microbiol 63:1317–1322
Zhilina TN, Zavarzina DG, Kolganova TV, Lysenko AM, Tourova TP (2009a) Alkaliphilus peptidofermentans sp. nov., a new alkaliphilic bacterial soda lake isolate capable of peptide fermentation and FeIII reduction. Microbiology 78:445–454, [translated from Mikrobiologiya, 2009, 78, 496–505]. Validation List no 130 (2009) Int J Syst Evol Microbiol 59, 2647-2648
Zhilina TN, Zavarzina DG, Osipov GA, Kostrikina NA, Tourova TP (2009b) Natronincola ferrireducens sp. nov., and Natronincola peptidovorans sp. nov., new anaerobic alkaliphilic peptolytic iron-reducing bacteria isolated from soda lakes. Microbiology 78:455–467, [translated from Mikrobiologiya, 2009, 78, 506–518]. Validation List no 130 (2009) Int J Syst Evol Microbiol 59, 2647–2648
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2014 Springer-Verlag Berlin Heidelberg
About this entry
Cite this entry
Stackebrandt, E. (2014). The Family Clostridiaceae, Other Genera. In: Rosenberg, E., DeLong, E.F., Lory, S., Stackebrandt, E., Thompson, F. (eds) The Prokaryotes. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-30120-9_214
Download citation
DOI: https://doi.org/10.1007/978-3-642-30120-9_214
Published:
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-30119-3
Online ISBN: 978-3-642-30120-9
eBook Packages: Biomedical and Life SciencesReference Module Biomedical and Life Sciences