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Biological Development and Evolution, Complexity and Self-Organization in

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Definition of the Subject

Much work over the past half-century in developmental and evolutionary biology has focused on a subset of an organism’s components, its genes. The hierarchical regulatory relationships among genes have been a major emphasis in studies in development, while the variation of genes has played a corresponding role in evolutionary studies. In the past decade, however, investigators have increasingly considered the part played by physical and dynamical properties of cells and tissues, and their molecular components, in producing biological characteristics over the course of ontogeny and phylogeny. Living cells and tissues encompass numerous interpenetrating multicomponent systems in which dynamical interactions among intracellular gene products, metabolites, ions, etc., and interactions between cells, directly via their adhesive surfaces, or indirectly via secreted extracellular matrix (ECM) molecules or diffusible signaling molecules (“morphogens”), generate...

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Abbreviations

Biochemical Oscillation:

The variation in the concentration of a given molecule in principle either in space or time, although typically the term is reserved for the latter.

Canalization:

An evolved property of developmental pathways that permits the robust generation of a phenotype in the face of perturbations. The perturbations can be those internal to the organism, in the form of gene mutation or developmental noise, or external to it, in the form of environmental variability.

Differential Adhesion:

The capacity of cells to adhere to each other in a cell type-dependent manner. The strength of adhesion between two cells of type A typically differs from that between cells of type B. This may be due to differences either in the number or type of cell adhesion molecules.

Differential Gene Expression:

The main regulatory basis of cell differentiation. Cells of different type in a given organism carry the same set of genes (the genome) but vary in which of these genes are active, that is, expressed.

Reaction-Diffusion Mechanism:

A conceptual framework for describing spatiotemporal pattern formation in a system of several interacting and diffusing chemical species.

Bibliography

Primary Literature

  • Artavanis-Tsakonas S, Rand MD, Lake RJ (1999) Notch signaling: cell fate control and signal integration in development. Science 284:770–776

    ADS  Google Scholar 

  • Aulehla A, Wehrle C, Brand-Saberi B, Kemler R, Gossler A, Kanzler B, Herrmann BG (2003) Wnt3a plays a major role in the segmentation clock controlling somitogenesis. Dev Cell 4:395–406

    Google Scholar 

  • Bateson W (1894) Materials for the study of variation. Macmillan, London

    Google Scholar 

  • Boissonade J, Dulos E, DeKepper P (1994) Turing patterns: from myth to reality. In: Kapral R, Showalter K (eds) Chemical waves and patterns. Kluwer, Boston

    Google Scholar 

  • Borisuk MT, Tyson JJ (1998) Bifurcation analysis of a model of mitotic control in frog eggs. J Theor Biol 195:69–85

    Google Scholar 

  • Brown SJ, Patel NH, Denell RE (1994) Embryonic expression of the single Tribolium engrailed homolog. Dev Genet 15:7–18

    Google Scholar 

  • Carroll SB, Grenier JK, Weatherbee SD (2001) From DNA to diversity: molecular genetics and the evolution of animal design. Blackwell Science, Malden

    Google Scholar 

  • Choe CP, Brown SJ (2007) Evolutionary flexibility of pair-rule patterning revealed by functional analysis of secondary pair-rule genes, paired and sloppy-paired in the short-germ insect, Tribolium castaneum. Dev Biol 302:281–294

    Google Scholar 

  • Christen B, Slack J (1999) Spatial response to fibroblast growth factor signalling in Xenopus embryos. Development 126:119–125

    Google Scholar 

  • Cinquin O, Demongeot J (2005) High-dimensional switches and the modelling of cellular differentiation. J Theor Biol 233:391–411

    Google Scholar 

  • Clements D, Friday RV, Woodland HR (1999) Mode of action of VegT in mesoderm and endoderm formation. Development 126:4903–4911

    Google Scholar 

  • Conway Morris S (2006) Darwin’s dilemma: the realities of the cambrian ‘explosion’. Philos Trans R Soc Lond B Biol Sci 361:1069–1083

    Google Scholar 

  • Cooke J, Zeeman EC (1976) A clock and wavefront model for control of the number of repeated structures during animal morphogenesis. J Theor Biol 58:455–476

    Google Scholar 

  • Davidson EH (2006) The regulatory genome: gene regulatory networks in development and evolution. Elsevier Academic Press, Amsterdam

    Google Scholar 

  • Dawes R, Dawson I, Falciani F et al (1994) Dax, a locust Hox gene related to fushi-tarazu but showing no pair-rule expression. Development 120:1561–1572

    Google Scholar 

  • de Gennes PG (1992) Soft matter. Science 256:495–497

    ADS  Google Scholar 

  • DeMarais AA, Moon RT (1992) The armadillo homologs beta-catenin and plakoglobin are differentially expressed during early development of Xenopus laevis. Dev Biol 153:337–346

    Google Scholar 

  • Dubrulle J, McGrew MJ, Pourquié O (2001) FGF signaling controls somite boundary position and regulates segmentation clock control of spatiotemporal Hox gene activation. Cell 106:219–232

    Google Scholar 

  • Duguay D, Foty RA, Steinberg MS (2003) Cadherin-mediated cell adhesion and tissue segregation: qualitative and quantitative determinants. Dev Biol 253:309–323

    Google Scholar 

  • Elowitz MB, Leibler S (2000) A synthetic oscillatory network of transcriptional regulators. Nature 403:335–338

    ADS  Google Scholar 

  • Forgacs G, Newman SA (2005) Biological physics of the developing embryo. Cambridge University Press, Cambridge

    Google Scholar 

  • Foty RA, Pfleger CM, Forgacs G, Steinberg MS (1996) Surface tensions of embryonic tissues predict their mutual envelopment behavior. Development 122:1611–1620

    Google Scholar 

  • Frasch M, Levine M (1987) Complementary patterns of even-skipped and fushi tarazu expression involve their differential regulation by a common set of segmentation genes in Drosophila. Genes Dev 1:981–995

    Google Scholar 

  • Giancotti FG, Ruoslahti E (1999) Integrin signaling. Science 285:1028–1032

    Google Scholar 

  • Gilbert SF (2006) Developmental biology, 8th edn. Sinauer Associates, Sunderland

    Google Scholar 

  • Giudicelli F, Ozbudak EM, Wright GJ, Lewis J (2007) Setting the tempo in development: an investigation of the zebrafish somite clock mechanism. PLoS Biol 5:e150

    Google Scholar 

  • Goodwin BC (1963) Temporal organization in cells; a dynamic theory of cellular control processes. Academic, London

    Google Scholar 

  • Green J (2002) Morphogen gradients, positional information, and Xenopus: interplay of theory and experiment. Dev Dyn 225:392–408

    Google Scholar 

  • Gurdon JB (1988) A community effect in animal development. Nature 336:772–774

    ADS  Google Scholar 

  • Harding K, Hoey T, Warrior R et al (1989) Autoregulatory and gap gene response elements of the even-skipped promoter of Drosophila. EMBO J 8:1205–1212

    Google Scholar 

  • Harland R, Gerhart J (1997) Formation and function of Spemann’s organizer. Annu Rev Cell Dev Biol 13:611–667

    Google Scholar 

  • Holland PW (1999) Gene duplication: past, present and future. Semin Cell Dev Biol 10:541–547

    MathSciNet  Google Scholar 

  • Holley SA, Geisler R, Nusslein-Volhard C (2000) Control of her1 expression during zebrafish somitogenesis by a Delta-dependent oscillator and an independent wave-front activity. Genes Dev 14:1678–1690

    Google Scholar 

  • Holley SA, Julich D, Rauch GJ et al (2002) her1 and the notch pathway function within the oscillator mechanism that regulates zebrafish somitogenesis. Development 129:1175–1183

    Google Scholar 

  • Howard K, Ingham P (1986) Regulatory interactions between the segmentation genes fushi tarazu, hairy, and engrailed in the Drosophila blastoderm. Cell 44:949–957

    Google Scholar 

  • Ingham PW (1988) The molecular genetics of embryonic pattern formation in Drosophila. Nature 335:25–34

    ADS  Google Scholar 

  • Irvine KD, Wieschaus E (1994) Cell intercalation during Drosophila germband extension and its regulation by pair-rule segmentation genes. Development 120:827–841

    Google Scholar 

  • Ish-Horowicz D, Pinchin SM, Ingham PW et al (1989) Autocatalytic ftz activation and instability induced by ectopic ftz expression. Cell 57:223–232

    Google Scholar 

  • Israelachvili JN (1991) Intermolecular and surface forces. Academic, London

    Google Scholar 

  • Itow T (1986) Inhibitors of DNA synthesis change the differentiation of body segments and increase the segment number in horseshoe crab embryos. Roux’s Arch Dev Biol 195:323–333

    Google Scholar 

  • Jablonka E, Lamb MJ (1995) Epigenetic inheritance and evolution. Oxford University Press, Oxford

    Google Scholar 

  • Kaneko K (2003) Organization through intra-inter dynamics. In: Müller GB, Newman SA (eds) Origination of organismal form: beyond the gene in developmental and evolutionary biology. MIT Press, Cambridge, pp 195–220

    Google Scholar 

  • Kaneko K (2006) Life: an introduction to complex systems biology. Springer, New York

    Google Scholar 

  • Kaneko K, Yomo T (1994) Cell division, differentiation and dynamic clustering. Phys D 75:89–102

    MATH  Google Scholar 

  • Karr TL, Weir MP, Ali Z et al (1989) Patterns of engrailed protein in early Drosophila embryos. Development 105:605–612

    Google Scholar 

  • Kauffman SA (1969) Metabolic stability and epigenesis in randomly constructed genetic nets. J Theor Biol 22:437–467

    MathSciNet  Google Scholar 

  • Keller AD (1995) Model genetic circuits encoding autoregulatory transcription factors. J Theor Biol 172:169–185

    Google Scholar 

  • Kerszberg M, Wolpert L (1998) Mechanisms for positional signaling by morphogen transport: a theoretical study. J Theor Biol 191:103–114

    Google Scholar 

  • Lander AD (2007) Morpheus unbound: reimagining the morphogen gradient. Cell 128:245–256

    Google Scholar 

  • Lawrence PA (1992) The making of a fly: the genetics of animal design. Blackwell Scientific Publications, Oxford

    Google Scholar 

  • Lengyel I, Epstein IR (1992) A chemical approach to designing Turing patterns in reaction-diffusion systems. Proc Natl Acad Sci U S A 89:3977–3979

    ADS  MATH  Google Scholar 

  • Lewis J (2003) Autoinhibition with transcriptional delay: a simple mechanism for the zebrafish somitogenesis oscillator. Curr Biol 13:1398–1408

    Google Scholar 

  • Liu PZ, Kaufman TC (2005) Short and long germ segmentation: unanswered questions in the evolution of a developmental mode. Evol Dev 7:629–646

    Google Scholar 

  • Mangan S, Zaslaver A, Alon U (2003) The coherent feedforward loop serves as a sign-sensitive delay element in transcription networks. J Mol Biol 334:197–204

    Google Scholar 

  • McDowell N, Gurdon JB, Grainger DJ (2001) Formation of a functional morphogen gradient by a passive process in tissue from the early Xenopus embryo. Int J Dev Biol 45(1 Spec No):199–207

    Google Scholar 

  • Meinhardt H (2001) Organizer and axes formation as a self-organizing process. Int J Dev Biol 45(1 Spec No):177–188

    Google Scholar 

  • Mikhailov AS (1990) Foundations of synergetics I. Springer, Berlin

    MATH  Google Scholar 

  • Monk NA (2003) Oscillatory expression of Hes1, p53, and NF-kappaB driven by transcriptional time delays. Curr Biol 13:1409–1413

    Google Scholar 

  • Morisco C, Seta K, Hardt SE et al (2001) Glycogen synthase kinase 3beta regulates GATA4 in cardiac myocytes. J Biol Chem 276:28586–28597

    Google Scholar 

  • Newman SA (1993) Is segmentation generic? Bioessays 15:277–283

    Google Scholar 

  • Newman SA (1994) Generic physical mechanisms of tissue morphogenesis: a common basis for development and evolution. J Evol Biol 7:467–488

    Google Scholar 

  • Newman SA (1998) Epithelial morphogenesis: a physico-evolutionary interpretation. In: Chuong C-M (ed) Molecular basis of epithelial appendage morphogenesis. Landes, Austin, pp 341–358

    Google Scholar 

  • Newman SA (2003) From physics to development: the evolution of morphogenetic mechanisms. In: Müller GB, Newman SA (eds) Origination of organismal form: beyond the gene in developmental and evolutionary biology. MIT Press, Cambridge

    Google Scholar 

  • Newman SA (2006) The developmental-genetic toolkit and the molecular homology-analogy paradox. Biol Theory 1:12–16

    Google Scholar 

  • Newman SA (2007) William Bateson’s physicalist ideas. In: Laubichler M, Maienschein J (eds) From embryology to Evo-Devo: a history of evolutionary development. MIT Press, Cambridge, MA, pp 83–107

    Google Scholar 

  • Newman SA, Bhat R (2008) Dynamical patterning modules: physico-genetic determinants of morphological development and evolution. Phys Biol 5:15008

    ADS  Google Scholar 

  • Newman SA, Müller GB (2000) Epigenetic mechanisms of character origination. J Exp Zool 288:304–317

    Google Scholar 

  • Newman SA, Forgacs G, Müller GB (2006) Before programs: the physical origination of multicellular forms. Int J Dev Biol 50:289–299

    Google Scholar 

  • Nieuwkoop PD (1969) The formation of mesoderm in Urodelean amphibians. I. Induction by the endoderm. Wilhelm Roux’ Arch Entwicklungsmech Organ 162:341–373

    Google Scholar 

  • Nowak MA, Boerlijst MC, Cooke J, Smith JM (1997) Evolution of genetic redundancy. Nature 388:167–171

    ADS  Google Scholar 

  • Oates AC, Ho RK (2002) Hairy/E(spl)-related (Her) genes are central components of the segmentation oscillator and display redundancy with the Delta/Notch signaling pathway in the formation of anterior segmental boundaries in the zebrafish. Development 129:2929–2946

    Google Scholar 

  • Palmeirim I, Henrique D, Ish-Horowicz D et al (1997) Avian hairy gene expression identifies a molecular clock linked to vertebrate segmentation and somitogenesis. Cell 91:639–648

    Google Scholar 

  • Patel NH (1994) Developmental evolution: insights from studies of insect segmentation. Science 266:581–590

    ADS  Google Scholar 

  • Patel NH, Kornberg TB, Goodman CS (1989) Expression of engrailed during segmentation in grasshopper and crayfish. Development 107:201–212

    Google Scholar 

  • Patel NH, Ball EE, Goodman CS (1992) Changing role of even-skipped during the evolution of insect pattern formation. Nature 357:339–342

    ADS  Google Scholar 

  • Pennisi E (2003) A low number wins the GeneSweep pool. Science 300:1484

    Google Scholar 

  • Phillips HM (1969) Equilibrium measurements of embryonic cell adhesiveness: physical formulation and testing of the differential adhesion hypothesis. PhD thesis, Johns Hopkins University

    Google Scholar 

  • Pourquié O (2003) The segmentation clock: converting embryonic time into spatial pattern. Science 301:328–330

    ADS  Google Scholar 

  • Primmett DR, Norris WE, Carlson GJ et al (1989) Periodic segmental anomalies induced by heat shock in the chick embryo are associated with the cell cycle. Development 105:119–130

    Google Scholar 

  • Reinitz J, Mjolsness E, Sharp DH (1995) Model for cooperative control of positional information in Drosophila by bicoid and maternal hunchback. J Exp Zool 271:47–56

    Google Scholar 

  • Rutherford SL, Lindquist S (1998) Hsp90 as a capacitor for morphological evolution. Nature 396:336–342

    ADS  Google Scholar 

  • Sakuma R, Ohnishi Yi Y, Meno C et al (2002) Inhibition of nodal signalling by lefty mediated through interaction with common receptors and efficient diffusion. Genes Cells 7:401–412

    Google Scholar 

  • Salazar-Ciudad I, Garcia-Fernandez J, Sole RV (2000) Gene networks capable of pattern formation: from induction to reaction-diffusion. J Theor Biol 205:587–603

    Google Scholar 

  • Salazar-Ciudad I, Newman SA, Solé R (2001a) Phenotypic and dynamical transitions in model genetic networks. I. Emergence of patterns and genotype-phenotype relationships. Evol Dev 3:84–94

    Google Scholar 

  • Salazar-Ciudad I, Solé R, Newman SA (2001b) Phenotypic and dynamical transitions in model genetic networks. II. Application to the evolution of segmentation mechanisms. Evol Dev 3:95–103

    Google Scholar 

  • Schmalhausen II (1949) Factors of evolution. Blakiston, Philadelphia

    Google Scholar 

  • Schulte-Merker S, Smith JC (1995) Mesoderm formation in response to Brachyury requires FGF signalling. Curr Biol 5:62–67

    Google Scholar 

  • Small S, Kraut R, Hoey T et al (1991) Transcriptional regulation of a pair-rule stripe in Drosophila. Genes Dev 5:827–839

    Google Scholar 

  • Small S, Blair A, Levine M (1992) Regulation of even-skipped stripe 2 in the Drosophila embryo. EMBO J 11:4047–4057

    Google Scholar 

  • Solnica-Krezel L (2003) Vertebrate development: taming the nodal waves. Curr Biol 13:R7–R9

    Google Scholar 

  • Spemann H, Mangold H (1924) Über Induktion von Embryonalanlagen durch Implantation artfremder Organisatoren. Wilhelm Roux’ Arch Entwicklungsmech Organ 100:599–638

    Google Scholar 

  • St Johnston D, Nusslein-Volhard C (1992) The origin of pattern and polarity in the Drosophila embryo. Cell 68:201–219

    Google Scholar 

  • Steinberg MS (1963) Reconstruction of tissues by dissociated cells. Some morphogenetic tissue movements and the sorting out of embryonic cells may have a common explanation. Science 141:401–408

    ADS  Google Scholar 

  • Stern CD, Bellairs R (1984) Mitotic activity during somite segmentation in the early chick embryo. Anat Embryol (Berl) 169:97–102

    Google Scholar 

  • Stollewerk A, Schoppmeier M, Damen WG (2003) Involvement of Notch and Delta genes in spider segmentation. Nature 423:863–865

    ADS  Google Scholar 

  • Strogatz SH (1994) Nonlinear dynamics and chaos: with applications to physics, biology, chemistry, and engineering. Perseus, Cambridge

    Google Scholar 

  • Sun B, Bush S, Collins-Racie L et al (1999) Derriere: a TGF-beta family member required for posterior development in Xenopus. Development 126:1467–1482

    Google Scholar 

  • Tsarfaty I, Resau JH, Rulong S, Keydar I, Faletto DL, Vande Woude GF (1992) The met proto-oncogene receptor and lumen formation. Science 257:1258–1261

    ADS  Google Scholar 

  • Turing AM (1952) The chemical basis of morphogenesis. Phil Trans R Soc B 237:37–72

    ADS  Google Scholar 

  • Van Obberghen-Schilling E, Roche NS, Flanders KC et al (1988) Transforming growth factor beta-1 positively regulates its own expression in normal and transformed cells. J Biol Chem 263:7741–7746

    Google Scholar 

  • Waddington CH (1957) The strategy of the genes. Allen and Unwin, London

    Google Scholar 

  • Wilkins AS (1997) Canalization: a molecular genetic perspective. Bioessays 19:257–262

    Google Scholar 

  • Winfree AT (1980) The geometry of biological time. Springer, New York

    MATH  Google Scholar 

  • Wolpert L (2002) Principles of development. Oxford University Press, Oxford

    Google Scholar 

Book and Reviews

  • Meinhardt H (1982) Models of biological pattern formation. Academic, New York

    Google Scholar 

  • Müller GB, Newman SA (2003) Origination of organismal form: beyond the gene in developmental and evolutionary biology. MIT Press, Cambridge, pp 221–239

    Google Scholar 

  • Newman SA, Comper WD (1990) ‘Generic’ physical mechanisms of morphogenesis and pattern formation. Development 110:1–18

    Google Scholar 

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Newman, S.A., Forgacs, G. (2013). Biological Development and Evolution, Complexity and Self-Organization in. In: Meyers, R. (eds) Encyclopedia of Complexity and Systems Science. Springer, New York, NY. https://doi.org/10.1007/978-3-642-27737-5_35-3

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