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Introduction
In his Nobel Prize–winning hypothesis, the biochemist Christian Anfinsen postulated that the native, biologically active conformation of a polypeptide chain represents a kinetically accessible unique free energy minimum (Anfinsen 1973). Its simplified form, “one sequence–one structure,” has played an extremely useful role, helping make sense of the structural principles of protein function; but there is growing evidence that it is not always true. Three-dimensional (3D) domain swapping is a phenomenon that violates the dogma in a particularly elegant way. It is quite ironic that the flagship of 3D domain swapping is ribonuclease A (RNase A), the very protein used by Anfinsen to work out his dogma. 3D domain swapping is a mechanism of protein oligomerization, in which a structural element of a protein fold is replaced by an identical element from another subunit. Some proteins, for instance, RNase A, can assume many...
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References
Anfinsen CB. Principles that govern the folding of protein chains. Science. 1973;181:223–30.
Bennett MJ, Choe S, Eisenberg DS. Domain swapping. Entangling alliances between proteins. Proc Natl Acad Sci USA. 1994;91:3127–31.
Cohen FE, Prusiner SB. Pathologic conformations of prion proteins. Annu Rev Biochem. 1998;67:793–819.
Crestfield AM, Stein WH, Moore S. On the aggregation of bovine pancreatic ribonuclease. Arch Biochem Biophys. 1962;1(Suppl):217–22.
Crestfield AM, Stein WH, Moore S. Properties and conformation of the histidine residues at the active site of ribonuclease. J Biol Chem. 1963;238:2421–8.
Janowski R, Kozak M, Jankowska E, Grzonka Z, Grubb A, Abrahamson M, Jaskolski M. Human cystatin C, an amyloidogenic protein, dimerizes through three-dimensional domain swapping. Nat Struct Biol. 2001;8:316–20.
Klafki H-W, Pick AI, Pardowitz I, Cole T, Awni LA, Barnikol HV, Mayer F, Kratzin HD, Hilschmann N. Reduction of disulfide bonds in an amyloidogenic Bence Jones protein leads to formation of “amyloid-like” fibrils in vitro. Biol Chem Hoppe Seyler. 1993;372:1117–22.
Knaus KJ, Morillas M, Swietnicki W, Malone M, Surewicz WK, Mee VC. Crystal structure of the human prion protein reveals a mechanizm for oligomerization. Nature Struct Biol. 2001;8:770–4.
Laganowsky A, Benesch JL, Landau M, Ding L, Sawaya MR, Cascio D, Huang Q, Robinson CV, Horowitz J, Eisenberg D. Crystal structures of truncated alphaA and alphaB crystallins reveal structural mechanisms of polydispersity important for eye lens function. Protein Sci. 2010;19:1031–43.
Lee S, Eisenberg D. Seeded conversion of recombinant prion protein to a disulfide-bonded by a reduction-oxidation process. Nat Struct Biol. 2003;10:725–30.
Liu Y, Hart PJ, Schlunehher MP, Eisenberg D. The crystal structure of a 3D domain-swapped dimer of RNase A at 2.1 Å resolution. Proc Natl Acad Sci USA. 1998;95:3437–42.
Liu Y, Gotte G, Libonati M, Eisenberg D. Structures of the two 3D domain swapped Rnase trimers. Protein Sci. 2002;11:371–80.
Mazzarella L, Capasso S, Demasi D, Di Lorenzo G, Mattia CA, Zagari A. Bovine seminal ribonuclease: structure at 1.9 Å resolution. Acta Cryst. 1993;D49:389–402.
Nelson R, Eisenberg D. Recent atomic models of amyloid fibril structure. Curr Opin Struct Biol. 2006;16:260–5.
Wahlbom M, Wang X, Lindstrom V, Carlemalm E, Jaskolski M, Grubb A. Fibrillogenic oligomers of human cystatin C are formed by propagated domain swapping. J Biol Chem. 2007;282:18318–26.
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Jaskolski, M. (2013). 3D Domain Swapping. In: Roberts, G.C.K. (eds) Encyclopedia of Biophysics. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-16712-6_431
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DOI: https://doi.org/10.1007/978-3-642-16712-6_431
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