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Chemotaxis to Hydrocarbons

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Part of the book series: Handbook of Hydrocarbon and Lipid Microbiology ((HHLM))

Abstract

Chemotaxis is the ability of organisms to move towards or away from chemical gradients in the environment. Hydrocarbon compounds, which are sources of carbon and energy for many bacterial species, have been shown to be chemoattractants for specific organisms. While much is known about catabolic pathways for the degradation of hydrocarbons and related compounds, less is known about the molecular basis for chemotactic responses to these volatile and toxic chemicals.

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References

  • Adadevoh JS, Triolo S, Ramsburg CA, Ford RM (2016) Chemotaxis increases the residence time of bacteria in granular media containing distributed contaminant sources. Environ Sci Technol 50:181–187

    Article  CAS  PubMed  Google Scholar 

  • Adler J (1973) A method for measuring chemotaxis and use of the method to determine optimum conditions for chemotaxis by Escherichia coli. J Gen Microbiol 74:77–91

    Article  CAS  PubMed  Google Scholar 

  • Alexandre G (2010) Coupling metabolism and chemotaxis-dependent behaviours by energy taxis receptors. Microbiology 156:2283–2293

    Article  CAS  PubMed  Google Scholar 

  • Armitage JP, Schmitt R (1997) Bacterial chemotaxis: Rhodobacter sphaeroides and Sinorhizobium meliloti – variations on a theme? Microbiology 143:3671–3682

    Article  CAS  PubMed  Google Scholar 

  • Arora PK, Bae H (2014) Biotransformation and chemotaxis of 4-chloro-2-nitrophenol by Pseudomonas sp. JHN Microb Cell Fact 13:110

    Google Scholar 

  • Arora PK, Srivastava A, Singh VP (2014) Degradation of 4-chloro-3-nitrophenol via a novel intermediate, 4-chlororesorcinol by Pseudomonas sp. JHN Sci Rep 4:4475

    Article  PubMed  CAS  Google Scholar 

  • Bhushan B, Halasz A, Thiboutot S, Ampleman G, Hawari J (2004) Chemotaxis-mediated biodegradation of cyclic nitramine explosives RDX, HMX, and CL-20 by Clostridium sp. EDB2. Biochem Biophys Res Commun 316:816–821

    Article  CAS  PubMed  Google Scholar 

  • Bhushan B, Samanta SK, Chauhan A, Chakraborti AK, Jain RK (2000) Chemotaxis and biodegradation of 3-methyl-4-nitrophenol by Ralstonia sp. SJ98. Biochem Biophys Res Commun 275:129–133

    Article  CAS  PubMed  Google Scholar 

  • Chauhan S, Barbieri P, Wood TK (1998) Oxidation of trichloroethylene, 1,1-dichloroethylene, and chloroform by toluene/o-xylene monooxygenase from Pseudomonas stutzeri OX1. Appl Environ Microbiol 64:3023–3024

    CAS  PubMed  PubMed Central  Google Scholar 

  • Chávez FP, Gordillo F, Jerez CA (2006) Adaptive responses and cellular behaviour of biphenyl-degrading bacteria toward polychlorinated biphenyls. Biotechnol Adv 24:309–320

    Article  PubMed  CAS  Google Scholar 

  • Criddle CS, DeWitt JT, Grbic-Galic D, McCarty PL (1990) Transformation of carbon tetrachloride by Pseudomonas sp. strain KC under denitrification conditions. Appl Environ Microbiol 56:3240–3246

    CAS  PubMed  PubMed Central  Google Scholar 

  • Dybas MJ, Tatara GM, Criddle CS (1995) Localization and characterization of the carbon tetrachloride transformation activity of Pseudomonas sp. strain KC. Appl Environ Microbiol 61:758–762

    CAS  PubMed  PubMed Central  Google Scholar 

  • Fahrner KA, Block SM, Krishnaswamy S, Parkinson JS, Berg HC (1994) A mutant hook-associated protein (HAP3) facilitates torsionally induced transformations of the flagellar filament of Escherichia coli. J Mol Biol 238:173–186

    Article  CAS  PubMed  Google Scholar 

  • Gilbert D, Jakobsen HH, Winding A, Mayer P (2014) Co-transport of polycyclic aromatic hydrocarbons by motile microorganisms leads to enhanced mass transfer under diffusive conditions. Environ Sci Technol 48:4368–4375

    Article  CAS  PubMed  Google Scholar 

  • Gkorezis P, Daghio M, Franzetti A, Van Hamme JD, Sillen W, Vangronsveld J (2016) The interaction between plants and bacteria in the remediation of petroleum hydrocarbons: an environmental perspective. Front Microbiol 7:1836

    Article  PubMed  PubMed Central  Google Scholar 

  • Gordillo F, Chávez FP, Jerez CA (2007) Motility and chemotaxis of Pseudomonas sp. B4 towards polychlorobiphenyls and chlorobenzoates. FEMS Microbiol Ecol 60:322–328

    CAS  Google Scholar 

  • Grimm AC, Harwood CS (1997) Chemotaxis of Pseudomonas putida to the polyaromatic hydrocarbon naphthalene. Appl Environ Microbiol 63:4111–4115

    CAS  PubMed  PubMed Central  Google Scholar 

  • Grimm AC, Harwood CS (1999) NahY, a catabolic plasmid-encoded receptor required for chemotaxis of Pseudomonas putida to the aromatic hydrocarbon naphthalene. J Bacteriol 181:3310–3316

    CAS  PubMed  PubMed Central  Google Scholar 

  • Haigler BE, Spain JC (1993) Biodegradation of 4-nitrotoluene by Pseudomonas sp. strain 4NT. Appl Environ Microbiol 59:2239–2243

    CAS  PubMed  PubMed Central  Google Scholar 

  • Hanzel J, Harms H, Wick LY (2010) Bacterial chemotaxis along vapor-phase gradients of naphthalene. Environ Sci Technol 44:9304–9310

    Article  CAS  PubMed  Google Scholar 

  • Hanzel J, Thullner M, Harms H, Wick LY (2012) Walking the tightrope of bioavailability: growth dynamics of PAH degraders on vapour-phase PAH. Microb Biotechnol 5:79–86

    Article  CAS  PubMed  Google Scholar 

  • Harwood CS (1989) A methyl-accepting protein is involved in benzoate taxis in Pseudomonas putida. J Bacteriol 171:4603–4608

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Harwood CS, Fosnaugh K, Dispensa M (1989) Flagellation of Pseudomonas putida and analysis of its motile behavior. J Bacteriol 171:4063–4066

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Harwood CS, Nichols NN, Kim M-K, Ditty JL, Parales RE (1994) Identification of the pcaRKF gene cluster from Pseudomonas putida: involvement in chemotaxis, biodegradation, and transport of 4-hydroxybenzoate. J Bacteriol 176:6479–6488

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Harwood CS, Ornston LN (1984) TOL plasmid can prevent induction of chemotactic responses to aromatic acids. J Bacteriol 160:797–800

    CAS  PubMed  PubMed Central  Google Scholar 

  • Harwood CS, Parales RE, Dispensa M (1990) Chemotaxis of Pseudomonas putida toward chlorinated benzoates. Appl Environ Microbiol 56:1501–1503

    CAS  PubMed  PubMed Central  Google Scholar 

  • Hazen TC (1994) Chemotactic selection of pollutant degrading soil bacteria. U.S. Patent, 5,324,661

    Google Scholar 

  • Hazen TC, Lopez-de-Victoria G (1994) Method of degrading pollutants in soil. U.S. Patent, 5,236,703

    Google Scholar 

  • Huang Z, Ni B, Jiang CY, Wu YF, He YZ, Parales RE, Liu SJ (2016) Direct sensing and signal transduction during bacterial chemotaxis toward aromatic compounds in Comamonas testosteroni. Mol Microbiol 101:224–237

    Article  CAS  PubMed  Google Scholar 

  • Imae Y, Oosawa K, Mizuno T, Kihara M, Macnab RM (1987) Phenol: a complex chemoeffector in bacterial chemotaxis. J Bacteriol 169:371–379

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Iwaki H, Muraki T, Ishihara S, Hasegawa Y, Rankin KN, Sulea T, Boyd J, Lau PC (2007) Characterization of a pseudomonad 2-nitrobenzoate nitroreductase and its catabolic pathway-associated 2-hydroxylaminobenzoate mutase and a chemoreceptor involved in 2-nitrobenzoate chemotaxis. J Bacteriol 189:3502–3514

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Krell T, Lacal J, Guazzaroni ME, Busch A, Silva-Jiménez H, Fillet S, Reyes-Darías JA, Muñoz-Martínez F, Rico-Jiménez M, García-Fontana C, Duque E, Segura A, Ramos JL (2012) Responses of Pseudomonas putida to toxic aromatic carbon sources. J Biotechnol 160:25–32

    Article  CAS  PubMed  Google Scholar 

  • Krell T, Lacal J, Munoz-Martinez F, Reyes-Darias JA, Cadirci BH, Garcia-Fontana C, Ramos JL (2011) Diversity at its best: bacterial taxis. Environ Microbiol 13:1115–1124

    Article  CAS  PubMed  Google Scholar 

  • Krell T, Lacal J, Reyes-Darias JA, Jimenez-Sanchez C, Sungthong R, Ortega-Calvo JJ (2013) Bioavailability of pollutants and chemotaxis. Curr Opin Biotechnol 24:451–456

    Article  CAS  PubMed  Google Scholar 

  • Lacal J, Muñoz-Martínez F, Reyes-Darías JA, Duque E, Matilla M, Segura A, Calvo JJ, Jímenez-Sánchez C, Krell T, Ramos JL (2011) Bacterial chemotaxis towards aromatic hydrocarbons in Pseudomonas. Environ Microbiol 13:1733–1744

    Article  CAS  PubMed  Google Scholar 

  • Lacal J, Reyes-Darias JA, Garcia-Fontana C, Ramos JL, Krell T (2013) Tactic responses to pollutants and their potential to increase biodegradation efficiency. J Appl Microbiol 114:923–933

    Article  CAS  PubMed  Google Scholar 

  • Lanfranconi MP, Alvarez HM, Studdert CA (2003) A strain isolated from gas oil-contaminated soil displays chemotaxis towards gas oil and hexadecane. Environ Microbiol 5:1002–1008

    Article  CAS  PubMed  Google Scholar 

  • Lau PCK, Wang Y, Patel A, Labbé D, Bergeron H, Brousseau R, Konishi Y, Rawlings M (1997) A bacterial basic region leucine zipper histidine kinase regulating toluene degradation. Proc Natl Acad Sci U S A 94:1453–1458

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Law AM, Aitken MD (2003) Bacterial chemotaxis to naphthalene desorbing from a nonaqueous liquid. Appl Environ Microbiol 69:5968–5973

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Leahy JG, Byrne AM, Olsen RH (1996) Comparison of factors influencing trichloroethylene degradation by toluene-oxidizing bacteria. Appl Environ Microbiol 62:825–833

    CAS  PubMed  PubMed Central  Google Scholar 

  • Lee DY, Ramos A, Macomber L, Shapleigh JP (2002) Taxis response of various denitrifying bacteria to nitrate and nitrite. Appl Environ Microbiol 68:2140–2147

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Leungsakul T, Keenan BG, Smets BF, Wood TK (2005) TNT and nitroaromatic compounds are chemoattractants for Burkholderia cepacia R34 and Burkholderia sp. strain DNT. Appl Microbiol Biotechnol 69:321–325

    Article  CAS  PubMed  Google Scholar 

  • Lewis TA, Paszczynski A, Gordon-Wylie SW, Jeedigunta S, Lee CH, Crawford RL (2001) Carbon tetrachloride dechlorination by the bacterial transition metal chelator pyridine-2,6-bis(thiocarboxylic acid). Environ Sci Technol 35:552–559

    Article  CAS  PubMed  Google Scholar 

  • Li P, Ma L, Feng YL, Mo MH, Yang FX, Dai HF, Zhao YX (2012) Diversity and chemotaxis of soil bacteria with antifungal activity against Fusarium wilt of banana. J Ind Microbiol Biotechnol 39:1495–1505

    Article  CAS  PubMed  Google Scholar 

  • Li S, Wackett LP (1992) Trichloroethylene oxidation by toluene dioxygenase. Biochem Biophys Res Comm 185:443–451

    Article  CAS  PubMed  Google Scholar 

  • Luu RA, Kootstra JD, Nesteryuk V, Brunton C, Parales JV, Ditty JL, Parales RE (2015) Integration of chemotaxis, transport and catabolism in Pseudomonas putida and identification of the aromatic acid chemoreceptor PcaY. Mol Microbiol 96:134–147

    Article  CAS  PubMed  Google Scholar 

  • Marx RB, Aitken MD (1999) Quantification of chemotaxis to naphthalene by Pseudomonas putida G7. Appl Environ Microbiol 65:2847–2852

    CAS  PubMed  PubMed Central  Google Scholar 

  • Marx RB, Aitken MD (2000a) Bacterial chemotaxis enhances naphthalene degradation in a heterogeneous aqueous system. Environ Sci Technol 34:3379–3383

    Article  CAS  Google Scholar 

  • Marx RB, Aitken MD (2000b) A material-balance approach for modeling bacterial chemotaxis to a consumable substrate in the capillary assay. Biotechnol Bioeng 68:308–315

    Article  CAS  PubMed  Google Scholar 

  • Mason OU, Hazen TC, Borglin S, Chain PS, Dubinsky EA, Fortney JL, Han J, Holman HY, Hultman J, Lamendella R, Mackelprang R, Malfatti S, Tom LM, Tringe SG, Woyke T, Zhou J, Rubin EM, Jansson JK (2012) Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater horizon oil spill. ISME J 6:1715–1727

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Matilla MA, Krell T (2017) Chemoreceptor-based signal sensing. Curr Opin Biotechnol 45:8–14

    Article  CAS  PubMed  Google Scholar 

  • Meng L, Li H, Bao M, Sun P (2017) Metabolic pathway for a new strain Pseudomonas synxantha LSH-7′: from chemotaxis to uptake of n-hexadecane. Sci Rep 7:39068

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ni B, Huang Z, Fan Z, Jiang CY, Liu SJ (2013) Comamonas testosteroni uses a chemoreceptor for tricarboxylic acid cycle intermediates to trigger chemotactic responses towards aromatic compounds. Mol Microbiol 90:813–823

    Article  CAS  PubMed  Google Scholar 

  • Ni B, Huang Z, Wu YF, Fan Z, Jiang CY, Liu SJ (2015) A novel chemoreceptor MCP2983 from Comamonas testosteroni specifically binds to cis-aconitate and triggers chemotaxis towards diverse organic compounds. Appl Microbiol Biotechnol 99:2773–2781

    Article  CAS  PubMed  Google Scholar 

  • Nisenbaum M, Sendra GH, Gilbert GA, Scagliola M, González JF, Murialdo SE (2013) Hydrocarbon biodegradation and dynamic laser speckle for detecting chemotactic responses at low bacterial concentration. J Environ Sci 25:613–625

    Article  CAS  Google Scholar 

  • Olson MS, Ford RM, Smith JA, Fernandez EJ (2004) Quantification of bacterial chemotaxis in porous media using magnetic resonance imaging. Environ Sci Technol 38:3864–3870

    Article  CAS  PubMed  Google Scholar 

  • Ortega-Calvo JJ, Marchenko AI, Vorobyov AV, Borovick RV (2003) Chemotaxis in polycyclic aromatic hydrocarbon-degrading bacteria isolated from coal-tar- and oil-polluted rhizospheres. FEMS Microbiol Ecol 44:373–381

    Article  CAS  PubMed  Google Scholar 

  • Pandey G, Chauhan A, Samanta SK, Jain RK (2002) Chemotaxis of a Ralstonia sp. SJ98 toward co-metabolizable nitroaromatic compounds. Biochem Biophys Res Commun 299:404–409

    Article  CAS  PubMed  Google Scholar 

  • Pandey G, Jain RK (2002) Bacterial chemotaxis toward environmental pollutants: role in bioremediation. Appl Environ Microbiol 68:5789–5795

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Pandey J, Chauhan A, Jain RK (2009) Integrative approaches for assessing the ecological sustainability of in situ bioremediation. FEMS Microbiol Rev 33:324–375

    Article  CAS  PubMed  Google Scholar 

  • Pandey J, Sharma NK, Khan F, Ghosh A, Oakeshott JG, Jain RK, Pandey G (2012) Chemotaxis of Burkholderia sp. strain SJ98 towards chloronitroaromatic compounds that it can metabolise. BMC Microbiol 12:19

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Parales RE (2004) Nitrobenzoates and aminobenzoates are chemoattractants for Pseudomonas strains. Appl Environ Microbiol 70:285–292

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Parales RE, Ditty JL, Harwood CS (2000) Toluene-degrading bacteria are chemotactic to the environmental pollutants benzene, toluene, and trichoroethylene. Appl Environ Microbiol 66:4098–4104

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Parales RE, Harwood CS (2002) Bacterial chemotaxis to pollutants and plant-derived aromatic molecules. Curr Opin Microbiol 5:266–273

    Article  CAS  PubMed  Google Scholar 

  • Parales RE, Ju K-S, Rollefson J, Ditty JL (2008) Bioavailability, transport and chemotaxis of organic pollutants. In: Diaz E (ed) Microbial Bioremediation. Caister Academic Press, Norfolk, pp 145–187

    Google Scholar 

  • Parkinson JS, Hazelbauer GL, Falke JJ (2015) Signaling and sensory adaptation in Escherichia coli chemoreceptors: 2015 update. Trends Microbiol 3:257–266

    Article  CAS  Google Scholar 

  • Paul D, Singh R, Jain RK (2006) Chemotaxis of Ralstonia sp. SJ98 towards p-nitrophenol in soil. Environ Microbiol 8:1797–1804

    Article  CAS  PubMed  Google Scholar 

  • Pedit JA, Marx RB, Miller CT, Aitken MD (2002) Quantitative analysis of experiments on bacterial chemotaxis to naphthalene. Biotechnol Bioeng 78:626–634

    Article  CAS  PubMed  Google Scholar 

  • Pham HT, Parkinson JS (2011) Phenol sensing by Escherichia coli chemoreceptors: a nonclassical mechanism. J Bacteriol 193:6597–6604

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Philips J, Miroshnikov A, Haest PJ, Springael D, Smolders E (2014) Motile Geobacter dechlorinators migrate into a model source zone of trichloroethene dense non-aqueous phase liquid: experimental evaluation and modeling. J Contam Hydrol 170:28–38

    Google Scholar 

  • Pieper DH, Timmis KN, Ramos JL (1996) Designing bacteria for the degradation of nitro- and chloroaromatic pollutants. Naturwissenschaften 83:201–213

    Article  CAS  Google Scholar 

  • Rabinovitch-Deere CA, Parales RE (2012) Three types of taxis used in the response of Acidovorax sp. strain JS42 to 2-nitrotoluene. Appl Environ Microbiol 78:2308–2315

    Article  CAS  Google Scholar 

  • Rhys-Williams W, Taylor SC, Williams PA (1993) A novel pathway for the catabolism of 4-nitrotoluene by Pseudomonas. J Gen Microbiol 139:1967–1972

    Article  CAS  PubMed  Google Scholar 

  • Roberts MA, Papachristodoulou A, Armitage JP (2010) Adaptation and control circuits in bacterial chemotaxis. Biochem Soc Trans 38:1265–1269

    Article  CAS  PubMed  Google Scholar 

  • Roush CJ, Lastoskie CM, Worden RM (2006) Denitrification and chemotaxis of Pseudomonas stutzeri KC in porous media. J Environ Sci Health A Tox Hazard Subst Environ Eng 41:967–983

    Article  CAS  PubMed  Google Scholar 

  • Ryoo D, Shim H, Canada K, Barberi P, Wood TK (2000) Aerobic degradation of tetrachloroethylene by toluene-o-monooxygenase of Pseudomonas stutzeri OX1. Nat Biotechnol 18:775–778

    Article  CAS  PubMed  Google Scholar 

  • Samanta SK, Bhushan B, Chauhan A, Jain RK (2000) Chemotaxis of a Ralstonia sp. SJ98 toward different nitroaromatic compounds and their degradation. Biochem Biophys Res Commun 269:117–123

    Article  CAS  PubMed  Google Scholar 

  • Samanta SK, Jain RK (2000) Evidence for plasmid-mediated chemotaxis of Pseudomonas putida towards naphthalene and salicylate. Can J Microbiol 46:1–6

    Article  CAS  PubMed  Google Scholar 

  • Sarand I, Osterberg S, Holmqvist S, Holmfeldt P, Skärfstad E, Parales RE, Shingler V (2008) Metabolism-dependent taxis towards (methyl)phenols is coupled through the most abundant of three polar localized Aer-like proteins of Pseudomonas putida. Environ Microbiol 10:1320–1334

    Article  CAS  PubMed  Google Scholar 

  • Shields MS, Francesconi SC (1996) Microbial degradation of trichloroethylene, dichloroethylenes, and aromatic pollutants. U.S. Patent 5,543,317

    Google Scholar 

  • Shioi J, Dang CV, Taylor BL (1987) Oxygen as attractant and repellent in bacterial chemotaxis. J Bacteriol 169:3118–3123

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Shitashiro M, Kato J, Fukumura T, Kuroda A, Ikeda T, Takiguchi N, Ohtake H (2003) Evaluation of bacterial aerotaxis for its potential use in detecting the toxicity of chemicals to microorganisms. J Biotechnol 101:11–18

    Article  CAS  PubMed  Google Scholar 

  • Shitashiro M, Tanaka H, Hong CS, Kuroda A, Takiguchi N, Ohtake H, Kato J (2005) Identification of chemosensory proteins for trichloroethylene in Pseudomonas aeruginosa. J Biosci Bioeng 99:396–402

    Article  CAS  PubMed  Google Scholar 

  • Sikkema J, De Bont JAM, Poolman B (1995) Mechanisms of membrane toxicity of hydrocarbons. Microbiol Rev 59:201–222

    CAS  PubMed  PubMed Central  Google Scholar 

  • Singh R, Olson MS (2010) Kinetics of trichloroethylene and toluene toxicity to Pseudomonas putida F1. Environ Toxicol Chem 29:56–63

    Article  CAS  PubMed  Google Scholar 

  • Smits TH, Witholt B, van Beilen JB (2003) Functional characterization of genes involved in alkane oxidation by Pseudomonas aeruginosa. Antonie Van Leeuwenhoek 84:193–200

    Article  CAS  PubMed  Google Scholar 

  • Spain JC, Hughes JB, Knackmuss H-J (2000) Biodegradation of nitroaromatic compounds and explosives. CRC Press, Boca Raton

    Google Scholar 

  • Strobel KL, McGowan S, Bauer RD, Griebler C, Liu J, Ford RM (2011) Chemotaxis increases vertical migration and apparent transverse dispersion of bacteria in a bench-scale microcosm. Biotechnol Bioeng 108:2070–2077

    Article  CAS  PubMed  Google Scholar 

  • Szurmant H, Ordal GW (2004) Diversity in chemotaxis mechanisms among the bacteria and archaea. Microbiol Mol Biol Rev 68:301–319

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Taguchi K, Fukatomi H, Kuroda A, Kato J, Ohtake H (1997) Genetic identification of chemotactic transducers for amino acids in Pseudomonas aeruginosa. Microbiology 143:3223–3229

    Article  CAS  PubMed  Google Scholar 

  • Taylor BL (2007) Aer on the inside looking out: paradigm for a PAS-HAMP role in sensing oxygen, redox and energy. Mol Microbiol 65:1415–1424

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Taylor BL, Miller JB, Warrick HM, Koshland DEJ (1979) Electron acceptor taxis and blue light effect on bacterial chemotaxis. J Bacteriol 140:567–573

    CAS  PubMed  PubMed Central  Google Scholar 

  • Taylor BL, Watts KJ, Johnson MS (2007) Oxygen and redox sensing by two-component systems that regulate behavioral responses: behavioral assays and structural studies of Aer using in vivo disulfide cross-linking. Methods Enzymol 422:190–232

    Article  CAS  PubMed  Google Scholar 

  • Taylor BL, Zhulin IB (1999) PAS domains: internal sensors of oxygen, redox potential, and light. Microbiol Mol Biol Rev 63:479–506

    CAS  PubMed  PubMed Central  Google Scholar 

  • Taylor BL, Zhulin IB, Johnson MS (1999) Aerotaxis and other energy-sensing behavior in bacteria. Annu Rev Microbiol 53:103–128

    Article  CAS  PubMed  Google Scholar 

  • Tremaroli V, Vacchi Suzzi C, Fedi S, Ceri H, Zannoni D, Turner RJ (2010) Tolerance of Pseudomonas pseudoalcaligenes KF707 to metals, polychlorobiphenyls and chlorobenzoates: effects on chemotaxis-, biofilm- and planktonic-grown cells. FEMS Microbiol Ecol 74:291–301

    Article  CAS  PubMed  Google Scholar 

  • van Beilen JB, Panke S, Lucchini S, Franchini AG, Röthlisberger M, Witholt B (2001) Analysis of Pseudomonas putida alkane-degradation gene clusters and flanking insertion sequences: evolution and regulation of the alk genes. Microbiology 147:1621–1630

    Article  PubMed  Google Scholar 

  • Vangnai AS, Takeuchi K, Oku S, Kataoka N, Nitisakulkan T, Tajima T, Kato J (2013) Identification of CtpL as a chromosomally encoded chemoreceptor for 4-chloroaniline and catechol in Pseudomonas aeruginosa PAO1. Appl Environ Microbiol 79:7241–7248

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Vardar G, Barbieri P, Wood TK (2005) Chemotaxis of Pseudomonas stutzeri OX1 and Burkholderia cepacia G4 toward chlorinated ethenes. Appl Microbiol Biotechnol 66:696–701

    Article  CAS  PubMed  Google Scholar 

  • Wackett LP, Gibson DT (1988) Degradation of trichloroethylene by toluene dioxygenase in whole cell studies with Pseudomonas putida F1. Appl Environ Microbiol 54:1703–1708

    CAS  PubMed  PubMed Central  Google Scholar 

  • Wang X, Atencia J, Ford RM (2015) Quantitative analysis of chemotaxis towards toluene by Pseudomonas putida in a convection-free microfluidic device. Biotechnol Bioeng 112:896–904

    Article  CAS  PubMed  Google Scholar 

  • Wang X, Lanning LM, Ford RM (2016) Enhanced retention of chemotactic bacteria in a pore network with residual NAPL contamination. Environ Sci Technol 50:165–172

    Article  CAS  PubMed  Google Scholar 

  • Wang X, Long T, Ford RM (2012) Bacterial chemotaxis toward a NAPL source within a pore-scale microfluidic chamber. Biotechnol Bioeng 109:1622–1628

    Article  CAS  PubMed  Google Scholar 

  • Witt ME, Dybas MJ, Worden RM, Criddle CS (1999) Motility-enhanced bioremediation of carbon tetrachloride-contaminated aquifer sediments. Environ Sci Technol 33:2958–2964

    Article  CAS  Google Scholar 

  • Wood PL, Parales JV, Parales RE (2006) Investigation of Ralstonia sp. strain U2 chemotaxis to naphthalene. Abstract, 106th general meeting of the American Society for Microbiology

    Google Scholar 

  • Wu G, Feng Y, Boyd SA (2003) Characterization of bacteria capable of degrading soil-sorbed biphenyl. Bull Environ Contam Toxicol 71:768–775

    Article  CAS  PubMed  Google Scholar 

  • Wuichet K, Zhulin IB (2010) Origins and diversification of a complex signal transduction system in prokaryotes. Sci Signal 3:50

    Article  CAS  Google Scholar 

  • Yamamoto K, Macnab RM, Imae Y (1990) Repellent response functions of the Trg and Tap chemoreceptors of Escherichia coli. J Bacteriol 172:383–388

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Young LY, Mitchell R (1973) Negative chemotaxis of marine bacteria to toxic chemicals. Appl Microbiol 25:972–975

    CAS  PubMed  PubMed Central  Google Scholar 

  • Yu HS, Alam M (1997) An agarose-in-plug bridge method to study chemotaxis in the archaeon Halobacterium salinarum. FEMS Microbiol Lett 156:265–269

    Article  CAS  PubMed  Google Scholar 

  • Zhang JJ, Xin YF, Liu H, Wang SJ, Zhou NY (2008) Metabolism-independent chemotaxis of Pseudomonas sp. strain WBC-3 toward aromatic compounds. J Environ Sci 20:1238–1242

    Article  CAS  Google Scholar 

  • Zhulin IB (2001) The superfamily of chemotaxis transducers: from physiology to genomics and back. Adv Microbial Phys 45:157–198

    CAS  Google Scholar 

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Acknowledgments

Chemotaxis research in the authors’ laboratories has been supported by the National Science Foundation (award MCB-0919930 to REP and JLD) and the University of California Davis Committee on Research New Funding Initiative (to REP).

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Correspondence to Rebecca E. Parales .

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Parales, R.E., Ditty, J.L. (2018). Chemotaxis to Hydrocarbons. In: Krell, T. (eds) Cellular Ecophysiology of Microbe: Hydrocarbon and Lipid Interactions. Handbook of Hydrocarbon and Lipid Microbiology . Springer, Cham. https://doi.org/10.1007/978-3-319-50542-8_43

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