Abstract
Despite the harmful effects observed when bacteria grow in a hydrocarbon-rich environment, some have been able to overcome the potential toxicity; however, specific interactions that operate at the hydrocarbon/aqueous interface remain unknown due to the difficulty of studying these interactions. Fortunately, there have been vast improvements in sample preparation such as the introduction of high-pressure freezing/freeze substitution (HPF/FS) which are able to preserve the ultrastructure while imaging. This process has been a gateway to a greater understanding of the ultrastructure of these interactions which could present deeper insight into the many processes that involve hydrocarbons. These processes include events such as catastrophic oil spills that give the opportunity to study the hydrocarbon/aqueous interface for the potential of utilizing new mechanisms in future disasters. This follows the possibility of reducing industrial oil souring by studying sulfate-producing bacterium, as well as furthering our understanding in biofuel production, where engineered microbes are used to produce hydrocarbon fuels.
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Abbasian F, Lockington R, Mallavarapu M, Naidu R (2015) A comprehensive review of aliphatic hydrocarbon biodegradation by bacteria. Appl Biochem Biotechnol 176(3):670–699. https://doi.org/10.1007/s12010-015-1603-5
Andrews RE, Parks LW, Spence KD (1980) Some effects of douglas fir terpenes on certain microorganisms. Appl Environ Microbiol 40(2):301–304. http://www.ncbi.nlm.nih.gov/pubmed/16345609. Accessed 22 Aug 2017
Atlas RM (1981) Microbial degradation of petroleum hydrocarbons: an environmental perspective. Microbiol Rev 45(1):180–209. http://www.ncbi.nlm.nih.gov/pubmed/7012571. Accessed 22 Aug 2017
Baelum J, Borglin S, Chakraborty R et al (2012) Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill. Environ Microbiol 14(9):2405–2416. https://doi.org/10.1111/j.1462-2920.2012.02780.x
Cheville NF, Stasko J (2014) Techniques in electron microscopy of animal tissue. Veterinary Pathology, 51(1):28–41. https://doi.org/10.1177/0300985813505114
Chhabra et al (2011) Generalized schemes for high-throughput manipulation of Desulfovibrio vulgaris genome. Appl Environ Microbiol 77(221):7595-7604. https://doi.org/10.1128/AEM.05495-11
Das N, Chandran P (2011) Microbial degradation of petroleum hydrocarbon contaminants: an overview. Biotechnol Res Int 2011:941810. https://doi.org/10.4061/2011/941810
De Smet MJ, Kingma J, Witholt B (1978) The effect of toluene on the structure and permeability of the outer and cytoplasmic membranes of Escherichia coli. Biochim Biophys Acta Biomembr 506(1):64–80. https://doi.org/10.1016/0005-2736(78)90435-2
Dunlop MJ, Dossani ZY, Szmidt HL et al (2011) Engineering microbial biofuel tolerance and export using efflux pumps. Mol Syst Biol 7:487. https://doi.org/10.1038/msb.2011.21
Gill CO, Ratledge C (1972) Effect of n-alkanes on the transport of glucose in Candida sp. strain 107. Biochem J 127(3):59P–60P. http://www.ncbi.nlm.nih.gov/pubmed/5076204. Accessed 22 Aug 2017
Harrop AJ, Hocknult MD, Lilly MD (1989) Biotransformations in organic solvents: a difference between gram-positive and gram-negative bacteria. Biotechnol Lett 11:807–810. https://link.springer.com/content/pdf/10.1007/BF01026102.pdf. Accessed 22 Aug 2017
Hazen TC, Dubinsky EA, DeSantis TZ et al (2010) Deep-Sea oil plume enriches indigenous oil-degrading bacteria. Science 330(6001):204. http://science.sciencemag.org/content/330/6001/204. Accessed 22 Aug 2017
Heidelberg JF, Seshadri R, Haveman SA et al (2004) The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. Nat Biotechnol 22(5):554–559. https://doi.org/10.1038/nbt959
Hunter RC, Beveridge TJ (2005) High-resolution visualization of Pseudomonas aeruginosa PAO1 biofilms by freeze-substitution transmission electron microscopy. J Bacteriol. https://doi.org/10.1128/JB.187.22.7619-7630.2005
Jhamb K, Auer M (2015) Electron microscopy protocols for the study of hydrocarbon-producing and hydrocarbon-decomposing microbes: classical and advanced methods. In: Springer, Berlin/Heidelberg, Hydrocarbon and Lipid Microbiology Protocols, pp 5–28. https://doi.org/10.1007/8623_2015_96
Lamendella R, Strutt S, Borglin S et al (2014) Assessment of the Deepwater Horizon oil spill impact on Gulf coast microbial communities. Front Microbiol 5:130. https://doi.org/10.3389/fmicb.2014.00130
Leahy JG, Colwell RR (1990) Microbial degradation of hydrocarbons in the environment. Microbiol Rev 54(3):305–315. http://www.ncbi.nlm.nih.gov/pubmed/2215423. Accessed 22 Aug 2017
Lee SK, Chou H, Ham TS, Lee TS, Keasling JD (2008) Metabolic engineering of microorganisms for biofuels production: from bugs to synthetic biology to fuels. Curr Opin Biotechnol 19(6):556–563. https://doi.org/10.1016/j.copbio.2008.10.014
Leffler WL (2008) Petroleum refining in nontechnical language. PennWell, Tulsa
Liamleam W, Annachhatre AP (2007) Electron donors for biological sulfate reduction. Biotechnol Adv 25(5):452–463. https://doi.org/10.1016/j.biotechadv.2007.05.002
Marchant, Banat (2015) Protocols for measuring biosurfactant production in microbial cultures. In: Hydrocarbon and lipid microbiology protocols – Springer protocols handbooks. https://doi.org/10.1007/8623
Matias VRF, Al-Amoudi A, Dubochet J, Beveridge TJ (2003) Cryo-transmission electron microscopy of frozen-hydrated sections of Escherichia coli and Pseudomonas aeruginosa cryo-transmission electron microscopy of frozen-hydrated sections of Escherichia coli and Pseudomonas aeruginosa. J Bacteriol. https://doi.org/10.1128/JB.185.20.6112
McDonald KL, Zalpuri R (1997) Electron Microscope Lab. Methods generic processing protocol. University of California, Berkeley, unpublished. http://em-lab.berkeley.edu/EML/protocols/pgeneric.php
McDonald Z. Electron Microscope Lab, 26 Giannini Hall, University of California, Berkeley, unpublished
McDonald KL, Auer M (2006) High-pressure freezing, cellular tomography, and structural cell biology. Biotechniques. https://doi.org/10.2144/000112226
McDonald KL, Morphew M, Verkade P, Müller-Reichert T (2007) Recent advances in high-pressure freezing: equipment- and specimen-loading methods. In: Electron microscopy: methods and protocols. Springer, Microscope Laboratory, University of California, Berkeley.https://doi.org/10.1007/978-1-59745-294-6_8
Muyzer G, Stams AJM (2008) The ecology and biotechnology of sulphate-reducing bacteria. Nat Rev Microbiol. https://doi.org/10.1038/nrmicro1892
Palsdottir H, Remis JP, Schaudinn C et al (2009) Three-dimensional macromolecular organization of cryofixed Myxococcus xanthus biofilms as revealed by electron microscopic tomography. J Bacteriol. https://doi.org/10.1128/JB.01333-08
Ratcliffe RM (2017) Successful bioaugmentation with microbes. http://bioremediate.com/hydrocarbon.html. Accessed 25 Aug 2017
Sauer K, Camper AK, Ehrlich GD, Costerton JW, Davies DG (2002) Pseudomonas aeruginosa. J Bacteriol. https://doi.org/10.1128/JB.184.4.1140
Sikkema J, De Bontt J, Poolmann B (1994) Interactions of cyclic hydrocarbons with biological membranes*. J Biol Chem 269(11):8022–8028. http://www.jbc.org/content/269/11/8022.full.pdf. Accessed 22 Aug 2017
Varjani SJ (2017) Microbial degradation of petroleum hydrocarbons. Bioresour Technol 223:277–286. https://doi.org/10.1016/j.biortech.2016.10.037
Zehr JP (2010) Microbes in Earth’s aqueous environments. Front Microbiol 1:4. https://doi.org/10.3389/fmicb.2010.00004
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Ataii, N., McHugh, T., Song, J., Nasarabadi, A., Auer, M. (2018). Ultrastructural Insights into Microbial Life at the Hydrocarbon: Aqueous Environment Interface. In: Krell, T. (eds) Cellular Ecophysiology of Microbe: Hydrocarbon and Lipid Interactions. Handbook of Hydrocarbon and Lipid Microbiology . Springer, Cham. https://doi.org/10.1007/978-3-319-50542-8_11
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