Definition
Biomarkers. Complex organic compounds which retained structural similarities to biological precursors identified in living organisms.
Lipids. Small molecules that originate from biochemical subunits, including fats, waxes, sterols, etc. These molecules can be extracted by organic solvents.
Coal. Combustible black sedimentary rock formed by humification of plant materials. According to increased maturation, coals are classified as lignites, subbituminous coals, bituminous coals, and anthracites, respectively.
Introduction
Organic geochemical methods have become important tools for the reconstruction of paleovegetation, environmental changes, and transformation processes of organic matter during diagenesis. The application of gas chromatography and mass spectrometry techniques on extractable organic matter (i.e. lipids) from low-rank coals or compounds released during pyrolysis has been used to gain information about coal-forming vegetation. Biomarkers were successfully used...
References
Alexander R, Kagi RI, Woodhouse GW, Volkman JK (1983) The geochemistry of some biodegraded Australian oils. APEA J 23:53ā63
Arens NC, Jahren AH, Amundson R (2000) Can C3 plants faithfully record the carbon isotopic composition of atmospheric carbon dioxide? Paleobiology 261:137ā164
Auras S, Wilde V, Scheffler K, Hoernes S, Kerp H, PĆ¼ttmann W (2006) Aromatized arborane/fernane hydrocarbons as biomarkers for cordaites. Naturwissenschaften 93:616ā621
Bechtel A, Markic M, Sachsenhofer RF, Jelen B, Gratzer R, PĆ¼ttmann W (2004) Paleoenvironment of the upper Oligocene Trbovlje coal seam (Slovenia). Int J Coal Geol 57:23ā48
Bechtel A, Sachsenhofer RF, Zdravkov A, Kostova I, Gratzer R (2005) Influence of floral assemblage, facies and diagenesis on petrography and organic geochemistry of the Eocene Bourgas coal and the Miocene Maritza East lignite (Bulgaria). Org Geochem 36:1498ā1522
Bechtel A, Hamor-Vido M, Sachsenhofer RF, Reischenbacher D, Gratzer R, PĆ¼ttmann W (2007) The middle Eocene Markushegy subbituminous coal (Hungary): paleoenvironmental implications from petrographical and geochemical studies. Int J Coal Geol 72:33ā52
Bechtel A, Gratzer R, Sachsenhofer RF, Gusterhuber J, LĆ¼cke A, PĆ¼ttmann W (2008) Biomarker and carbon isotope variation in coal and fossil wood of Central Europe through the Cenozoic. Palaeogeogr Palaeoclimatol Palaeoecol 262:166ā175
Bechtel A, KarayiÄit AI, Sachsenhofer RF, Inaner H, Christanis K, Gratzer G (2014) Spatial and temporal variability in vegetation and coal facies as reflected by organic petrological and geochemical data in the Middle Miocene Ćayirhan coal field (Turkey). Int J Coal Geol 134ā135:46ā60
Blumenstengel H, Krutzsch W, Volland L, Knoth W, Knuth G (1996) Revidierte Stratigraphie tertiƤrer Ablagerungen im sĆ¼dlischen Sachsen-Anhalt Teil 1: Raum Halle-Merseburg. Hallesches Jahrbuch der Geowissenschaften. Reihe B, Beiheft, Landesamt fĆ¼r Geologie und Bergwesen, Sachsen-Anhalt, Halle/Saale 1:101 pp
Boreham CJ, Crick IH, Powell TG (1988) Alternative calibration of the Methylphenanthrene index against vitrinite reflectance: application to maturity measurements on oils and sediments. Org Geochem 12:289ā294
Bruch A (1998) Palynologische Untersuchungen im OligozƤn Sloweniens ā PalƤoumwelt und PalƤoklima im Ostalpenraum. TĆ¼binger MikropalƤontol Mitt 18:1ā193
Cramer BS, Toggweiler JR, Wright JD, Katz ME, Miller KG (2009) Ocean overturning since the Late Cretaceous: inferences from a new benthic foraminiferal isotope compilation. Paleoceanography 24:PA4216. https://doi.org/10.1029/2008PA001683
Dehmer J (1989) Petrographical and organic geochemical investigation of the Oberpfalz brown coal deposit, West Germany. Int J Coal Geol 11:273ā290
Dick JM, Evans KA, Holman AI, Jaraula CMB, Grice K (2013) Estimation and application of the thermodynamic properties of aqueous phenanthrene and isomers of methylphenanthrenes at high temperature. Geochim Cosmochim Acta 122:247ā266
Didyk BM, Simoneit BRT, Brassell SC, Eglinton G (1978) Organic geochemical indicators of paleoenvironmental conditions of sedimentation. Nature 272:261ā222
Dzou LIP, Noble RA, Senftle JT (1995) Maturation effects on absolute biomarker concentration in a suite of coals and associated vitrinite concentrates. Org Geochem 23:681ā697
Eissmann L (1994) Leitfaden der Geologie des PrƤquartƤrs im Saale-Elbe-Gebiet. DEUQUA-Tagung 1994, Leipzig. Altenberger Naturwiss Forsch 7:11ā53
Feng X, Epstein S (1995) Carbon isotopes of trees from arid environments and implications for reconstructing atmospheric CO2 concentration. Geochim Cosmochim Acta 59:2599ā2608
Ficken KJ, Li B, Swain DL, Eglinton G (2000) An n-alkane proxy for the sedimentary input of submerged/ floating freshwater aquatic macrophytes. Org Geochem 31:745ā749
Goossens H, de Leeuw JW, Schenk PA, Brassell SC (1984) Tocopherols as likely precursors of pristane in ancient sediments an crude oils. Nature 312:440ā442
Grantham PJ, Douglas AG (1980) The nature and origin of sesquiterpenoids in some tertiary fossil resins. Geochim Cosmochim Acta 44:1801ā1810
Gupta V, Smemo KA, Yavitt JB, Fowle D, Branfireum B, Basiliko N (2013) Stable isotopes reveal widespread anaerobic methane oxidation across latitude and peatland type. Environ Sci Technol 47:8273ā8279
Haas M, Daxner-Hƶck G, Decker K, Kolcon I, Kovar-Eder J, Meller B, Sachsenhofer RF (1998) Palaeoenvironmental studies in the Early Miocene lignite opencast mine Oberdorf, N Voitsberg, Styria, Austria. In: Steininger FF (ed) The Early Miocene lignite deposit of Oberdorf N Voitsberg, 140. Jahrbuch Geologische Bundesanstalt, Wien, pp 413ā424
Hautevelle Y, Michels R, Malartre F, Trouiller A (2006) Vascular plant biomarker as proxies for palaeoflora and palaeoclimatic changes at the Dogger/Malm transition of the Paris Basin (France). Org Geochem 37:610ā625
Hayek EWH, Jordis U, Moche W, Sauter F (1989) A bicentennial of betulin. Phytochemistry 28:2229ā2242
Hayek EWH, Krenmayr P, Lohninger H, Jordis U, Moche W, Sauter F (1990) Identification of archaeological and recent wood tar pitches using gas chromatography/mass spectrometry and pattern recognition. Anal Chem 62:2038ā2043
Hemming DL, Switsur VR, Waterhouse JS, Heaton THE, Carter AH (1998) Climate variation and the stable carbon isotope composition of tree ring cellulose: an intercomparison of Quercus robur, Fagus sylvatica and Pinus silvestris. Tellus 50B:25ā33
Heppenheimer H, Steffens K, PĆ¼ttmann W, Kalkreuth W (1992) Comparison of resinite related aromatic biomarker distributions in Cretaceous-Tertiary coals from Canada and Germany. Org Geochem 18:273ā287
Jordan M (1995) Ī“13C-Markierungen in Jahrringen fossiler BaumstƤmme ā miozƤne Klimazeugen aus der Niederrheinischen Bucht. Hundt Druck GmbH, Kƶln
Kip N, van Winden JF, Pan Y, Bodrossy L, Reichart G-J, Smolders AJP, Jetten MSM, Sinninge Damste JS, Op den Caop HJM (2010) Global prevalence of methane oxidation by symbiotic bacteria in peat-moss ecosystems. Nat Geosci 3:617ā621
Koch BP, Rullkƶtter J, Lara RJ (2003) Evaluation of triterpenols and sterols as organic matter biomarkers in a mangrove ecosystem in northern Brazil. Wetl Ecol Manag 11:257ā263
Kolcon I, Sachsenhofer RF (1999) Petrography, palynology and depositional environment of the early Miocene Oberdorf lignite seam (Styrian Basin, Austria). Int J Coal Geol 41:275ā308
Krutzsch W, Blumenstengel H, Kiesel Y, RĆ¼ffle L (1992) PalƤobotanische Klimagliederung des AlttertiƤrs (MitteleozƤn bis OberoligozƤn) in Mitteldeutschland und das Problem der VerknĆ¼pfung mariner und kontinentaler Gliederungen (klassische Biostratigraphien ā palƤobotanisch-ƶkologische Klimastratigraphie ā Evolutions-Stratigraphie der Vertebraten). N Jb Geol PalƤontol 186:137ā253
Kvalheim OM, Christy AA, Telnaes N, Bjorseth A (1987) Maturity determination of organic matter in coals using the methylphenanthrene distribution. Geochim Cosmochim Acta 51:1883ā1888
Lim KLH, Pancost RD, Hornibrook ERC, Maxfield PJ, Evershed RP (2012) Archaeol: an indicator of methanogenesis in water-saturated soils. Archaea 2012. https://doi.org/10.1155/2012/896727
Lipson DA, Jha M, Raab TK, Oechel WC (2010) Reduction of iron (III) and humic substances plays a major role in anaerobic respiration in an Arctic peat soil. J Geophys Res Biogeosci 115:G00I06. https://doi.org/10.1029/2009JG001147
LĆ³pez-Dias V, Urbanczyk J, Blanco CG, Borrego AG (2013) Biomarkers as paleoclimate proxies in peatlands in coastal high plains in Asturias, N Spain. Int J Coal Geol 116ā117:270ā280
Loureiro MRB, Cardoso JN (1990) Aromatic hydrocarbons in the Paraiba Valley oil shale. Org Geochem 15:351ā359
Lu Y, Hautevelle Y, Michels R (2013) Determination of the molecular signature of fossil conifers by experimental palaeochemotaxonomy ā part 1: the Araucariaceae family. Biogeosciences 10:1943ā1962
Makou MC, Hughen KA, Xu L, Sylva SP, Eglinton TI (2007) Isotopic records of tropical vegetation and climate change from terrestrial vascular plant biomarkers preserved in Cariaco Basin sediments. Org Geochem 38:1680ā1691
Medeiros PM, Simoneit BRT (2007) Gas chromatography coupled to mass spectrometry for analyses of organic compounds and biomarkers as tracers for geological, environmental, and forensic research. J Sep Sci 30:1516ā1536
Moore TA, Shearer JC, Miller SL (1996) Fungal origin of oxidized plant material in the Palangkaraya peat deposit, Kalimantan Tengah, Indonesia: implications of āinertiniteā formation in coal. Int J Coal Geol 30:1ā23
Murray AP, Padley D, McKirdy DM, Booth WE, Summons RE (1994) Oceanic transport of fossil dammar resin: the chemistry of coastal resinites from South Australia. Geochim Cosmochim Acta 58:3049ā3059
Naafs BDA, Inglis GN, Zheng Y, Amesbury MJ, Biester H et al (2017) Introducing global peat-specific temperature and pH calibrations based on brGDGT bacterial lipids. Geochim Cosmochim Acta 208:285ā301
Nichols JE, Booth RK, Jackson ST, Pendall EG, Huang Y (2006) Paleohydrologic reconstruction based on n-alkane distributions in ombrotrophic peat. Org Geochem 37:1505ā1513
Noble RA, Alexander R, Kagi RI, Knox J (1985) Tetracyclic diterpenoid hydrocarbons in some Australian coals, sediments and crude oils. Geochim Cosmochim Acta 49:2141ā2147
Norgate CM, Boreham CJ, Wilkins AJ (1999) Changes in hydrocarbon maturity indices with coal rank and type, Buller Coalfield, New Zealand. Org Geochem 30:985ā1010
Nott CJ, Xie S, Avsejs LA, Maddy D, Chambers FM, Evershed RP (2000) n-Alkane distributions in ombrotrophic mires as indicators of vegetation change related to climatic variation. Org Geochem 31:231ā235
Orphan VJ, House CH, Hinrichs KU, McKeegan KD, DeLong EF (2001) Methano-consuming archaea revealed by direct coupled isotopic and phylogenetic analysis. Science 293:484ā487
Otto A, Wilde V (2001) Sesqui-, di-, and triterpenoids as chemosystematic markers in extant conifers ā a review. Bot Rev 67:141ā238
Otto A, Walther H, PĆ¼ttmann W (1997) Sesqui- and diterpenoid biomarkers in Taxodium-rich Oligocene oxbow lake clays, Weisselster basin, Germany. Org Geochem 26:105ā115
Pancost RD, Sinninge DamstĆ© JS (2003) Carbon isotopic compositions of prokaryotic lipids as tracers of carbon cycling in diverse settings. Chem Geol 195:29ā58
Pancost RD, Sinninghe DamstĆ© JS, de Lint S, van der Maarel MJEC, Gottschal JC, TMMS Party (2000a) Biomarker evidence for widespread anaerobic methane oxidation in Mediterranean sediments by a consortium of methanogenic archaea and bacteria. Appl Environ Microbiol 66:1126ā1132
Pancost RD, van Geel B, Baas M, Sinnighe-DamstĆ© JS (2000b) Delta13C values and radiocarbon dates of microbial biomarkers as tracers for carbon recycling in peat deposits. Geology 28:663ā666
Pancost RD, Baas M, van Geel B, Sinninghe DamstĆ© JS (2002) Biomarkers as proxies for plant inputs to peats: an example from a sub-boreal ombrotrophic bog. Org Geochem 33:675ā690
Pancost RD, McClymont EL, Bingham EM, Roberts Z, Charman DJ, Hornibrook ERC, Blundell A, Chambers FM, Lim KLH, Evershed RP (2011) Archeol as a methanogen biomarker in ombrotrophic bogs. Org Geochem 42:1279ā1287
Paull R, Michaelsen BH, McKirdy DM (1998) Fernenes and other triterpenoid hydrocarbons in Dicroidium-bearing Triassic mudstones and coals from South Australia. Org Geochem 29:1331ā1343
Peters KE, Walters C, Moldowan JM (2005) The biomarker guide, 2nd edn. Cambridge University Press, Cambridge, UK
Philp RP (1985) Fossil fuel biomarkers. Applications and spectra. Methods Geochem Geophys 23:1ā294
Poole I, Dolezych M, Kool J, van der Burgh J, van Bergen PF (2006) Do stable carbon isotopes of brown coal woods record changes in Lower Miocene palaeoecology? Palaeogeogr Palaeoclimatol Palaeoecol 236:345ā354
Radke M, Schaefer RG, Leythaueser D, TeichmĆ¼ller M (1980) Composition of soluble organic matter in coals: relation to rank and liptinite fluorescence. Geochim Cosmochim Acta 44:1787ā1800
Radke M, Wilsch H, Leythaueser D, TeichmĆ¼ller M (1982) Aromatic components of coal: relation of distribution pattern to rank. Geochim Cosmochim Acta 46:1831ā1848
Radke M, Leythaeuser D, TeichmĆ¼ller M (1984) Relationship between rank and composition of aromatic hydrocarbons for coals of different origins. Org Geochem 6:423ā430
Radke M, Welte HD, Willsch H (1986) Maturity parameters based on aromatic hydrocarbons: influence of organic matter type. Org Geochem 10:51ā64
Regnery J, PĆ¼ttmann W, Koutsodendris A, Mulch A, Pross J (2013) Comparison of the paleoclimatic significance of higher plant biomarker concentrations and pollen data: a case study of lake sediments from the Holsteinian interglacial. Org Geochem 61:73ā84
Sachse D, Billault I, Bowen GJ, Chikaraishi Y, Dawson TE, Feakins SJ, Freeman KH, Magill CR, McInerney FA, van der Meer MTJ, Polissar P, Robins RJ, Sachs JP, Schmidt H-L, Sessions AL, White JWC, West JB, Kahmen A (2012) Molecular paleohydrology: interpreting the hydrogen-isotopic composition of lipid biomarkers from photosynthesizing organisms. Annu Rev Earth Planet Sci 40:221ā249
Schulze T, Michaelis W (1990) Structure and origin of terpenoid hydrocarbons in some German coals. Org Geochem 16:1051ā1058
Schwarzbauer J, Littke R, Meier R, Strauss H (2013) Stable carbon isotope ratios of aliphatic biomarkers in late Paleozoic coals. Int J Coal Geol 107:127ā140
Segarra KEA, Schubotz F, Samarkin V, Yoshinga MY, Hinrichs K.U, Joye SB (2015) High rates of anerobic methane oxidation in freshwater wetlands reduce potential atmospheric methane emissions. Nat Commun 8. https://doi.org/10.1038/ncomms8477
Seki O, Meyers PA, Kawamura K, Zheng Y, Zhou W (2009) Hydrogen isotopic ratios of plant wax n-alkanes in a peat bog deposited in northeast China during the last 16 kyr. Org Geochem 33:671ā677
Simoneit BRT, Grimalt JO, Wang TG, Cox RE, Hatcher PG, Nissenbaum A (1986) Cyclic terpenoids of contemporary resinous plant detritus and of fossil woods, ambers, and coal. Org Geochem 10:877ā889
Smemo KA, Yavitt JB (2011) Anaerobic oxidation of methane: an underappreciated aspect of methane cycling in peatland ecosystems. Biogeosciences 8:779ā793
Smith LC, MacDonalds GM, Velicjko AA, Beilman DW, Borisowa OK, Frey KE, Krementski KV, Sheng Y (2004) Siberian peatlands: a net carbon sink and global methane source since the early. Holocene Sci 303:353ā356
StojanoviÄ K, ŽivotiÄ D (2013) Comparative study of Serbian Miocene coals ā insights from biomarker composition. Int J Coal Geol 107:3ā23
Strobl SAI, Sachsenhofer RF, Bechtel A, Meng Q (2014) Paeleoenvironment of the Eocene coal seam in the Fushun basin (NE China): implications from petrography and organic geochemistry. Int J Coal Geol 134ā135:24ā37
Szczerba M, Rospondek MJ (2010) Controls on distributions of methylphenanthrenes in sedimentary rock extracts: critical evaluation of existing geochemical data from molecular modelling. Org Geochem 41:1297ā1311
Talbot HM, McClymont EL, Inglis GN, Evershed RP, Pancost RD (2016) Origin and preservation of bacteriohopanepolyol signatures in Sphagnum peat from Bissendorf Moor (Germany). Org Geochem 97:95ā110
ten Haven HL, de Leeuw JW, Rullkƶtter J, Sinninghe Damste JS (1987) Restricted utility of the pristane/phytane ratio as a paleoenvironmental indicator. Nature 330:641ā643
Tomoaia-Cortisel M, Chifu E, Zsako J, Mocanu, Quin PJ, Kates M (1992) Monolayer properties of archaeol and caldarchaeol polar lipids of a methanogenic archaebacterium, Methanospirillum hungatei, at the air/water interface. Chem Phys Lipids 63:131ā138
Tornabene TG, Langworthy TA, Holzer G, Oro J (1979) Squalenes, phytanes and other isoprenoids as major neutral lipids of methanogenic and thermoacidophilic Archarbacteria. J Mol Evol 13:73ā83
van Aarssen BGK, Cox H, Hoogendoorn NP, de Leeuw JW (1990) A cadinene biopolymer in fossil and extant dammar resin as a source for cadinanes and biocadinanes in crude oils from South East Asia. Geochim Cosmochim Acta 54:3021ā3031
VĆ”vra N, Walther H (1993) Chemofossilien aus dem Harz von Cunninghamia miocenica ETTINGSHAUSEN (Taxodiaceae, Oligo/MiozƤn). N Jb Geol PalƤont 11:693ā704
Versteegh GJM, SchefuĆ E, Dupont L, Marret F, Sinnighe DamstĆ© JS, Jansen JHF (2004) Taraxerol and Rhizophora pollen as proxies for tracking past mangrove ecosystems. Geochim Cosmochim Acta 68:411ā422
Vliex M, Hageman HW, PĆ¼ttmann W (1994) Aromatized arborane/fernane hydrocarbons as molecular indicators of floral changes in the Upper Carboniferous/Lower Permian strata of the Saar/Nahe Basin, southwestern Germany. Geochim Cosmochim Acta 58:4689ā4702
van Winden JF, Kip N, Reichart GJ, Jetter MSM, Po den Camp HJM, Sinninghe Damste JS (2010) Lipids of symbiotic methane oxidizing bacteria in peat moss studied using stable carbon isotopic labelling. Org Geochem 41:1040ā1044
van Winden JF, Talbot HM, Vleeschouwer FD, Reichart G-J, Sinninge Damste JS (2012) Variation of methanotroph-related proxies in peat deposits from Misten Bog, Hautes-Fagnes, Belgium. Org Geochem 53:73ā79
Wolfe JA (1980) Tertiary climates and floristic relationships at high latitudes in the northern hemisphere. Palaeogeogr Palaeoclimatol Palaeoeol 30:313ā323
Wolff GA, Ruskin N, Marshall JD (1992) Biogeochemistry of an early diagenetic concretion from the Birchi Bed (L. Lias, W. Dorset, U.K.) Org Geochem 19:431ā444
Zachos J, Pagani M, Sloan L, Thomas E, Billups K (2001) Trends, rhythms, and aberrations in global climate 65 Ma to present. Science 292:686ā693
Zheng YH, Zhou WJ, Xie SC, Yu XF (2009) A comparative study of n-alkane biomarkers and pollen records: an example from southern China. Chin Sci Bull 54:1065ā1072
Zheng Y, Singarayer JS, Cheng P, Yu X, Liu Z, Valdes PJ, Pancost RD (2014) Holocene variations in peatland methane cycling associated with the Asian summer monsoon system. Nat Commun 5. https://doi.org/10.1038/ncomms5631
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Bechtel, A., PĆ¼ttmann, W. (2017). Biomarkers: Coal. In: White, W. (eds) Encyclopedia of Geochemistry. Encyclopedia of Earth Sciences Series. Springer, Cham. https://doi.org/10.1007/978-3-319-39193-9_150-1
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