Skip to main content

“Hairy Root” Technology: An Emerging Arena for Heterologous Expression of Biosynthetic Pathway Genes in Medicinal Plants

  • Reference work entry
  • First Online:
Transgenesis and Secondary Metabolism

Abstract

Plant-based secondary metabolites play an important role towards the drug development process, but their lower yield in the source plant and uncertainty in supply owing to miscellaneous intervening factors have necessitated biotechnological intervention for devising suitable and economical alternative production systems. The progression of innovative biotechnological tools in tandem with the understanding of the plant metabolic pathways at both biochemical and cellular levels through combining the accumulating knowledge of next-generation sequencing has opened up new avenues for metabolic engineering of biosynthetic pathways. In this context, hairy root (HR) cultures have emerged as a promising platform for tailoring the metabolic flux of a given plant system towards the overproduction of desired metabolites by heterologously or homologously expressing the rate-limiting genes. A rational utilization of such cultures of diverse medicinal plants for heterologous expression of targeted pathway genes has started gaining attention over the years in order to overcome the co-suppression related to normally encountered disadvantages of homologous overexpression. The potential and appropriateness of this approach have gathered the maximum momentum during recent years even though such studies have come into existence for more than two decades ago. The present review summarizes the overall reported advances made in the area of hairy root-mediated heterologous expression of rate-limiting key genes of diverse biosynthetic pathways which remained mainly concentrated on tropane alkaloid, terpene indole alkaloid, and mevalonate and phenylpropanoid pathways. Successful implementation of the entire procedure is also found to be reigned by several other underlying factors, amongst which characteristic/exclusivity of plant families, A. rhizogenes strains’ specificities, explant types, promoters’ specifications and media constituents which are some of the prominent deciding factors that differed amongst the reported observations and have been outlined in this review.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 199.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. David B, Wolfender JL, Dias DA (2015) The pharmaceutical industry and natural products: historical status and new trends. Phytochem Rev 14:299–315

    Article  CAS  Google Scholar 

  2. Newman DJ, Cragg GM (2012) Natural products as sources of new drugs over the 30 years from 1981 to 2010. J Nat Prod 75:311–335

    Article  CAS  Google Scholar 

  3. Atanasov AG, Waltenberger B, Wenzig EMP, Linder T, Wawrosch C, Uhrin P, Temml V, Wang L, Schwaiger S, Heiss EH, Rollinger JM, Schuster D, Breuss JM, Bochkov V, Mihovilovic MD, Kopp B, Bauer R, Dirscha VM, Stuppner H (2015) Discovery and resupply of pharmacologically active plant-derived natural products: a review. Biotechnol Adv 33:1582–1614

    Article  CAS  Google Scholar 

  4. Muller JL, Jahn L, Lippert A, Puschel J, Walter A (2014) Improvement of hairy root cultures and plants by changing biosynthetic pathways leading to pharmaceutical metabolites: strategies and applications. Biotechnol Adv 32:1168–1179

    Article  Google Scholar 

  5. Banerjee S, Singh S, Rahman LU (2012) Biotransformation studies using hairy root cultures – a review. Biotechnol Adv 30:461–468

    Article  CAS  Google Scholar 

  6. Verpoorte R, Contin A, Memelink J (2002) Biotechnology for the production of plant secondary metabolites. Phytochem Rev 1:13–25

    Article  CAS  Google Scholar 

  7. Zhou ML, Zhu XM, Shao JR, Tang YX, Wu YM (2011) Production and metabolic engineering of bioactive substances in plant hairy root culture. Appl Microbiol Biotechnol 90:1229–1239

    Article  CAS  Google Scholar 

  8. Miralpeix B, Rischer H, Hakkinen ST, Ritala A, Tuulikki SL, Oksman-Caldentey KM, Capell T, Christou P (2013) Metabolic engineering of plant secondary products: which way forward? Curr Pharmaceu Design 19:5622–5639

    Article  CAS  Google Scholar 

  9. Ikram NKBK, Zhan X, Pan XW, King BC, Simonsen HT (2015) Stable heterologous expression of biologically active terpenoids in green plant cells. Front Plant Sci 6:129–139

    Article  Google Scholar 

  10. Zhang L, Ding R, Chai Y, Bonfill M, Moyano E, Oksman-Caldentey KM, Xu T, Pi Y, Wang Z, Zhang H, Kai G, Liao Z, Sun X, Tang K (2004) Engineering tropane biosynthetic pathway in Hyoscyamus niger hairy root cultures. Proc Natl Acad Sci U S A 101:6786–6791

    Article  CAS  Google Scholar 

  11. Matzke MA, Matzke AJM (1995) How and why do plants inactivate homologous (Trans) genes? Plant Physiol 107:679–685

    Article  CAS  Google Scholar 

  12. Kang YM, Park DJ, Min JY, Song HJ, Jeong MJ, Kim YD, Kang SM, Karigar CS, Choi MS (2011) Enhanced production of tropane alkaloids in transgenic Scopolia parviflora hairy root cultures over-expressing putrescine N-methyl transferase (PMT) and hyoscyamine-6β-hydroxylase (H6H). In Vitro Cell Dev Biol Plant 47:516–524

    Article  CAS  Google Scholar 

  13. Jouhikainen K, Lindgren L, Jokelainen T, Hiltunen R, Teeri TH, Oksman-Caldentey KM (1999) Enhancement of scopolamine production in Hyoscyamus muticus L. hairy root cultures by genetic engineering. Planta 208:545–551

    Article  CAS  Google Scholar 

  14. Zhang L, Yang B, Lu B, Kai G, Wang Z, Xia Y, Ding R, Zhang H, Sun X, Chen W, Tang K (2007) Tropane alkaloids production in transgenic Hyoscyamus niger hairy root cultures over-expressing Putrescine N-methyltransferase is methyl jasmonate-dependent. Planta 225:887–896

    Article  CAS  Google Scholar 

  15. Moyano E, Fornale S, Palazon J, Cusido RM, Bagni N, Pinol MT (2002) Alkaloid production in Duboisia hybrid hairy root cultures overexpressing the pmt gene. Phytochemistry 59:697–702

    Article  CAS  Google Scholar 

  16. Moyano E, Jouhikainen K, Tammela P, Palazon J, Cusido RM, Pinol MT, Teeri TH, Oksman-Caldentey KM (2003) Effect of pmt gene overexpression on tropane alkaloid production in transformed root cultures of Datura metel and Hyoscyamus muticus. J Exp Bot 54:203–211

    Article  CAS  Google Scholar 

  17. Sato F, Hashimoto T, Hachiya A, Tamura K, Choi KB, Morishige T, Fujimoto H, Yamada Y (2001) Metabolic engineering of plant alkaloid biosynthesis. Proc Natl Acad Sci U S A 98:367–372

    Article  CAS  Google Scholar 

  18. Lee OS, Kang YM, Jung HY, Min JY, Kang SM, Karigar SC, Prasad DT, Bahk JD, Choi MS (2005) Enhanced production of tropane alkaloids in Scopolia parviflora by introducing the PMT (putrescine N-methyltransferase) gene. In Vitro Cell Dev Biol Plant 41:167–172

    Article  CAS  Google Scholar 

  19. Hashimoto T, Yun DJ, Yamada Y (1993) Products of tropane alkaloids in genetically engineered root cultures. Phytochemistry 32:713–718

    Article  CAS  Google Scholar 

  20. Palazon J, Moyano E, Cusido RM, Bonfilla M, Bagni N, Oksman-Caldentey KM, Pinol MT (2003) Alkaloid production in Duboisia hybrid hairy roots and plants overexpressing the h6h gene. Plant Sci 165:1289–1295

    Article  CAS  Google Scholar 

  21. Rahman LU, Kitamura Y, Yamaguchi J, Mukaia M, Akiyamaa K, Yamamotoa H, Muranaka T, Ikenaga T (2006) Exogenous plant H6H but not bacterial HCHL gene is expressed in Duboisia leichhardtii hairy roots and affects tropane alkaloid production. Enz Microbial Technol 39:1183–1189

    Article  CAS  Google Scholar 

  22. Hakkinen ST, Moyano E, Cusido RM, Palazon J, Pinol MT, Oksman-Caldentey KM (2005) Enhanced secretion of tropane alkaloids in Nicotiana tabacum hairy roots expressing heterologous hyoscyamine-6b-hydroxylase. J Exp Bot 56:2611–2618

    Article  Google Scholar 

  23. Moyano E, Palazon J, Bonfill M, Osuna L, Cusido RM, Oksman-Caldentey KM, Pinol MT (2007) Biotransformation of hyoscyamine into scopolamine in transgenic tobacco cell cultures. J Plant Physiol 164:521–524

    Article  CAS  Google Scholar 

  24. Zarate R, Jaber-Vazdekis NE, Medina B, Ravelo AG (2006) Tailoring tropane alkaloid accumulation in transgenic hairy roots of Atropa baetica by over-expressing the gene encoding hyoscyamine 6β-hydroxylase. Biotechnol Lett 28:1271–1277

    Article  CAS  Google Scholar 

  25. Yang C, Chen M, Zeng L, Zhang L, Liu X, Lan X, Tang K, Liao Z (2011) Improvement of tropane alkaloids production in hairy root cultures of Atropa belladonna by overexpressing pmt and h6h genes. Plant Omics J 4:29–33

    CAS  Google Scholar 

  26. Ritala A, Dong L, Imseng N, Seppanen-Laakso T, Vasilev N, van der Krol S, Rischer H, Maaheimo H, Virkki A, Brandli J, Schillberg S, Eibl R, Bouwmeester H, Oksman-Caldentey KM (2014) Evaluation of tobacco (Nicotiana tabacum L. cv. Petit Havana SR1) hairy roots for the production of geraniol, the first committed step in terpenoid indole alkaloid pathway. J Biotechnol 176:20–28

    Article  CAS  Google Scholar 

  27. Vasilev N, Schmitz C, Dong L, Ritala A, Imseng N, Hakkinen ST, van der Krol S, Eibl R, Oksman-Caldentey KM, Bouwmeester H, Fischer R, Schillberg S (2014) Comparison of plant-based expression platforms for the heterologous production of geraniol. Plant Cell Tiss Org Cult 117:373–380

    CAS  Google Scholar 

  28. Masakapalli SK, Ritala A, Dong L, van der Krol AR, Oksman-Caldentey KM, Ratcliffe RG, Sweetlove LJ (2014) Metabolic flux phenotype of tobacco hairy roots engineered for increased geraniol production. Phytochemistry 99:73–85

    Article  CAS  Google Scholar 

  29. Peebles CAM, Sander GW, Hughes EH, Peacock R, Shanks JV, San KY (2011) The expression of 1-deoxy-d-xylulose synthase and geraniol-10-hydroxylase or anthranilate synthase increases terpenoid indole alkaloid accumulation in Catharanthus roseus hairy roots. Met Eng 13:234–240

    Article  CAS  Google Scholar 

  30. Mehrotra S, Srivastava V, Rahman LU, Kukreja AK (2013) Overexpression of a Catharanthus tryptophan decarboxylase (tdc) gene leads to enhanced terpenoid indole alkaloid (TIA) production in transgenic hairy root lines of Rauwolfia serpentina. Plant Cell Tiss Org Cult 115:377–384

    Article  CAS  Google Scholar 

  31. Berlin J, Rugenhagen C, Dietze P, Fecker LF, Goddijn OJM, Hoge JHC (1993) Increased production of serotonin by suspension and root cultures of Peganum harmala transformed with a tryptophan decarboxylase cDNA clone from Catharanthus roseus. Transg Res 2:336–344

    Article  CAS  Google Scholar 

  32. Hughes EH, Hong SB, Gibson SI, Shanks JV, San KY (2004) Metabolic engineering of the indole pathway in Catharanthus roseus hairy roots and increased accumulation of tryptamine and serpentine. Met Eng 6:268–276

    Article  CAS  Google Scholar 

  33. Hong SB, Peebles CA, Shanks JV, San KY, Gibson SI (2006) Expression of the Arabidopsis feedback-insensitive anthranilate synthase holoenzyme and tryptophan decarboxylase genes in Catharanthus roseus hairy roots. J Biotechnol 122:28–38

    Article  CAS  Google Scholar 

  34. Geerlings A, Hallard D, Caballero AM, Cardoso IL, van der Heijden R, Verpoorte R (1999) Alkaloid production by a Cinchona officinalis ‘Ledergriana’ hairy root culture containing constitutive expression constructs of tryptophan decarboxylase and strictosidine synthase cDNAs from Catharanthus roseus. Plant Cell Rep 19:191–196

    Article  CAS  Google Scholar 

  35. Peebles CAM, Sander GW, Li M, Shanks JV, San KY (2009) Five year maintenance of the inducible expression of anthranilate synthase in Catharanthus roseus hairy roots. Biotechnol Bioeng 102:1521–1525

    Article  CAS  Google Scholar 

  36. Kim OT, Kim SH, Ohyama K, Muranaka T, Choi YE, Lee HY, Kim MY, Hwang B (2010) Upregulation of phytosterol and triterpene biosynthesis in Centella asiatica hairy roots overexpressed ginseng farnesyl diphosphate synthase. Plant Cell Rep 29:403–411

    Article  CAS  Google Scholar 

  37. Zang YX, Kim DH, Park BS, Hong SB (2009) Metabolic engineering of indole glucosinolates in Chinese cabbage hairy roots expressing Arabidopsis CYP79B2, CYP79B3 and CYP83B1. Biotechnol Bioprocess Eng 14:467–473

    Article  CAS  Google Scholar 

  38. Vranová E, Coman D, Gruissem W (2013) Network analysis of the MVA and MEP pathways for isoprenoid synthesis. Annu Rev Plant Biol 64:665–700

    Article  Google Scholar 

  39. Vaccaro M, Malafronte N, Alfieri M, Tommasi ND, Leone A (2014) Enhanced biosynthesis of bioactive abietane diterpenes by overexpressing AtDXS or AtDXR genes in Salvia sclarea hairy roots. Plant Cell Tiss Org Cult 119:65–77

    Article  CAS  Google Scholar 

  40. Mirjalili MH, Moyano E, Bonfill M, Cusido RM, Palazón J (2011) Overexpression of the Arabidopsis thaliana squalene synthase gene in Withania coagulans hairy root cultures. Biol Plant 5:357–360

    Article  Google Scholar 

  41. Argolo ACC, Charlwood BV, Pletsch M (2000) The regulation of solasodine production by Agrobacterium rhizogenes-transformed roots of Solanum aviculare. Planta Med 66:448–451

    Article  CAS  Google Scholar 

  42. Kim YK, Kim JK, Kim YB, Lee S, Kim SU, Park SU (2013) Enhanced accumulation of phytosterol and triterpene in hairy root cultures of Platycodon grandiflorum by overexpression of Panax ginseng 3-Hydroxy-3-methylglutaryl-coenzyme A Reductase. J Agric Food Chem 61:1928–1934

    Article  CAS  Google Scholar 

  43. Tuan PA, Kwon DY, Lee S, Arasu MV, Al-Dhabi NA, Park Nam I, Park SU (2014) Enhancement of chlorogenic acid production in hairy roots of Platycodon grandiflorum by over-expression of an Arabidopsis thaliana transcription factor AtPAP1. Int J Mol Sci 15:14743–14752

    Article  CAS  Google Scholar 

  44. Oller ALW, Agostini E, Milrad SR, Medina MI (2009) In situ and de novo biosynthesis of vitamin C in wild type and transgenic tomato hairy roots: a precursor feeding study. Plant Sci 177:28–34

    Article  Google Scholar 

Download references

Acknowledgments

The authors wish to express their sincere thanks to the Director, CSIR-CIMAP, for providing the facilities to carry out similar types of research at the Institute. SS and PP are thankful to the Council of Scientific and Industrial Research (CSIR, New Delhi, India) and the Department of Science and Technology (DST, New Delhi, India), respectively, for financial supports in the form of fellowships. Further acknowledgment also goes to the Academy of Scientific and Innovative Research (AcSIR-CIMAP).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Suchitra Banerjee .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2017 Springer International Publishing Switzerland

About this entry

Cite this entry

Banerjee, S., Singh, S., Pandey, P. (2017). “Hairy Root” Technology: An Emerging Arena for Heterologous Expression of Biosynthetic Pathway Genes in Medicinal Plants. In: Jha, S. (eds) Transgenesis and Secondary Metabolism. Reference Series in Phytochemistry. Springer, Cham. https://doi.org/10.1007/978-3-319-28669-3_7

Download citation

Publish with us

Policies and ethics