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Nucleosome

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Synonyms

Histone: DNA packaging unit

Definition

A nucleosome is the basic unit of chromatin consisting of ~147 bp of DNA wrapped around a core of eight histone proteins. The positioning of nucleosomes along the genome is involved in regulating accessibility of DNA to the transcription machinery and other regulatory proteins.

Introduction

Understanding the development of the malaria parasite during its complex life cycle continues to be an important focus of malaria research. Chromatin structure and nucleosome positioning play an important role in transcriptional regulation in all eukaryotic cells and thus in progression of the parasite through the different developmental stages in both the human and the mosquito host. Since Plasmodium falciparumis the major human malaria parasite and the only human malaria parasite that can be cultured in vitro, all studies on nucleosome positioning have been performed in this species. In addition, research has mainly focused on the intraerythrocytic...

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References

  • Cui L, Miao J. Chromatin-mediated epigenetic regulation in the malaria parasite Plasmodium falciparum. Eukaryot Cell. 2010;9(8):1138–49.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Duffy MF, Selvarajah SA, Josling GA, Petter M. The role of chromatin in Plasmodium gene expression. Cell Microbiol. 2012;14(6):819–28.

    Article  CAS  PubMed  Google Scholar 

  • Eitoku M, Sato L, Senda T, Horikoshi M. Histone chaperones: 30 years from isolation to elucidation of the mechanisms of nucleosome assembly and disassembly. Cell Mol Life Sci. 2008;65(3):414–44.

    Article  CAS  PubMed  Google Scholar 

  • Frankel MB, Knoll LJ. The ins and outs of nuclear trafficking: unusual aspects in apicomplexan parasites. DNA Cell Biol. 2009;28(6):277–84.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Furey TS. ChIP-seq and beyond: new and improved methodologies to detect and characterize protein-DNA interactions. Nat Rev Genet. 2012;13(12):840–52.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Henikoff S, Ahmad K. Assembly of variant histones into chromatin. Annu Rev Cell Dev Biol. 2005;21:133–53.

    Article  CAS  PubMed  Google Scholar 

  • Henikoff S, Furuyama T. The unconventional structure of centromeric nucleosomes. Chromosoma. 2012;121(4):341–52.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Hoeijmakers WA, Stunnenberg HG, Bartfai R. Placing the Plasmodium falciparum epigenome on the map. Trends Parasitol. 2012;28(11):486–95.

    Article  CAS  PubMed  Google Scholar 

  • Hoeijmakers WA, Salcedo-Amaya AM, Smits AH, Francoijs KJ, Treeck M, Gilberger TW, et al. H2A.Z/H2B.Z double-variant nucleosomes inhabit the AT-rich promoter regions of the Plasmodium falciparum genome. Mol Microbiol. 2013;87(5):1061–73.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Horrocks P, Wong E, Russell K, Emes RD. Control of gene expression in Plasmodium falciparum – ten years on. Mol Biochem Parasitol. 2009;164(1):9–25.

    Article  CAS  PubMed  Google Scholar 

  • Jansen A, Verstrepen KJ. Nucleosome positioning in Saccharomyces cerevisiae. Microbiol Mol Biol Rev. 2011;75(2):301–20.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Jiang C, Pugh BF. Nucleosome positioning and gene regulation: advances through genomics. Nat Rev Genet. 2009;10(3):161–72.

    Article  CAS  PubMed  Google Scholar 

  • Keck KM, Pemberton LF. Histone chaperones link histone nuclear import and chromatin assembly. Biochim Biophys Acta. 2012;1819(3–4):277–89.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Le Roch KG, Chung DW, Ponts N. Genomics and integrated systems biology in Plasmodium falciparum: a path to malaria control and eradication. Parasite Immunol. 2012;34(2–3):50–60.

    Article  PubMed Central  PubMed  Google Scholar 

  • Navadgi VM, Chandra BR, Mishra PC, Sharma A. The two Plasmodium falciparum nucleosome assembly proteins play distinct roles in histone transport and chromatin assembly. J Biol Chem. 2006;281(25):16978–84.

    Article  CAS  PubMed  Google Scholar 

  • Struhl K, Segal E. Determinants of nucleosome positioning. Nat Struct Mol Biol. 2013;20(3):267–73.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Sullivan Jr WJ. Chromatin remodeling. In: Ajioka JW, Soldati D, editors. Toxoplasma: molecular and cellular biology. Norfolk, UK: Horizon Scientific Press; 2007. p. 321–44.

    Google Scholar 

  • Talbert PB, Henikoff S. Histone variants–ancient wrap artists of the epigenome. Nat Rev Mol Cell Biol. 2010;11(4):264–75.

    Article  CAS  PubMed  Google Scholar 

  • Zentner GE, Henikoff S. Regulation of nucleosome dynamics by histone modifications. Nat Struct Mol Biol. 2013;20(3):259–66.

    Article  CAS  PubMed  Google Scholar 

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Correspondence to Evelien M. Bunnik .

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© 2013 Springer Science+Business Media New York

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Bunnik, E.M., Le Roch, K.G. (2013). Nucleosome. In: Hommel, M., Kremsner, P. (eds) Encyclopedia of Malaria. Springer, New York, NY. https://doi.org/10.1007/978-1-4614-8757-9_31-1

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  • DOI: https://doi.org/10.1007/978-1-4614-8757-9_31-1

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  • Publisher Name: Springer, New York, NY

  • Online ISBN: 978-1-4614-8757-9

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