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Metagenomic Research: Methods and Ecological Applications

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Encyclopedia of Metagenomics

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References

  • Banik JJ, Brady SF. Recent application of metagenomic approaches toward the discovery of antimicrobials and other bioactive small molecules. Curr Opin Microbiol. 2010;13:603–9.

    Article  PubMed Central  PubMed  CAS  Google Scholar 

  • Chen IC, Lin WD, Hsu SK, et al. Isolation and characterization of a novel lysine racemase from a soil metagenomic library. Appl Environ Microbiol. 2009;75:5161–6.

    Article  PubMed Central  PubMed  CAS  Google Scholar 

  • Cowan D, Meyer Q, Stafford W, et al. Metagenomic gene discovery: past, present and future. Trends Biotechnol. 2005;23:321–9.

    Article  PubMed  CAS  Google Scholar 

  • Delmont TO, Robe P, Clark I, et al. Metagenomic comparison of direct and indirect soil DNA extraction approaches. J Microbiol Methods. 2011;86:397–400.

    Article  PubMed  CAS  Google Scholar 

  • Ghazanfar S, Azim A, Ghazanfar MA, et al. Metagenomics and its application in soil microbial community studies: biotechnological prospects. J Anim Plant Sci. 2010;6:611–22.

    Google Scholar 

  • Guazzaroni ME, Beloqui A, Golyshin PN, et al. Metagenomics as a new technological tool to gain scientific knowledge. World J Microbiol Biotechnol. 2009;25:945–54.

    Article  CAS  Google Scholar 

  • Hirsch PR, Mauchline TH, Clark IM. Culture-independent molecular techniques for soil microbial ecology. Soil Biol Biochem. 2010;42:878–87.

    Article  CAS  Google Scholar 

  • Imfeld G, Vuilleumier S. Measuring the effects of pesticides on bacterial communities in soil: a critical review. Eur J Soil Biol. 2012;49:22–30.

    Article  CAS  Google Scholar 

  • Kakirde KS, Parsley LC, Liles MR. Size does matter: application-driven approaches for soil metagenomics. Soil Biol Biochem. 2010;42:1911–23.

    Article  PubMed Central  PubMed  CAS  Google Scholar 

  • Keshri J, Mishra A, Jha B. Microbial population index and community structure in saline-alkaline soil using gene targeted metagenomics. Microbiol Res. 2013;168:165–73.

    Article  PubMed  CAS  Google Scholar 

  • Larsen P, Hamada Y, Gilberta J. Modeling microbial communities: current, developing, and future technologies for predicting microbial community interaction. J Biotechnol. 2012;160:17–24.

    Article  PubMed  CAS  Google Scholar 

  • Lewin A, Wentzel A, Valla S. Metagenomics of microbial life in extreme temperature environments. Curr Opin Biotechnol. 2012;24:1–10.

    Article  CAS  Google Scholar 

  • Logares R, Haverkamp THA, Kumar S, et al. Environmental microbiology through the lens of high-throughput DNA sequencing: synopsis of current platforms and bioinformatics approaches. J Microbiol Methods. 2012;91:106–13.

    Article  PubMed  CAS  Google Scholar 

  • Mocali S, Benedetti A. Exploring research frontiers in microbiology: the challenge of metagenomics in soil microbiology. Res Microbiol. 2010;161:497–505.

    Article  PubMed  Google Scholar 

  • Monier JM, Demaneche S, Delmont TO, et al. Metagenomic exploration of antibiotic resistance in soil. Curr Opin Microbiol. 2011;14:229–35.

    Article  PubMed  CAS  Google Scholar 

  • Nelson KE, Weinstock GM, Highlander SK, et al. A catalog of reference genomes from the human microbiome. Science. 2010;328:994–9.

    Article  PubMed  CAS  Google Scholar 

  • Sharma R, Ranjan R, Kapardar RK, et al. Unculturable bacterial diversity: an untapped resource. Curr Sci. 2005;89:72–7.

    CAS  Google Scholar 

  • Singh J, Behal A, Singla N, et al. Metagenomics: concept, methodology, ecological inference and recent advances. Biotechnol J. 2009;4:480–94.

    Article  PubMed  CAS  Google Scholar 

  • Streit WR, Schmitz RA. Metagenomics - the key to the uncultured microbes. Curr Opin Microbiol. 2004;7:492–8.

    Article  PubMed  CAS  Google Scholar 

  • Thomas T, Gilbert J, Meyer F. Metagenomics - a guide from sampling to data analysis. Microbiol Inform Exp. 2012;2:3.

    Article  Google Scholar 

  • Uhlik O, Leewis MC, Strejcek M, et al. Stable isotope probing in the metagenomics era: a bridge towards improved bioremediation. Biotechnol Adv. 2013;31:154–65.

    Article  PubMed Central  PubMed  CAS  Google Scholar 

  • Vasconcellos SP, Angolini CFF, García INS, et al. Screening for hydrocarbon biodegraders in a metagenomic clone library derived from Brazilian petroleum reservoirs. Org Geochem. 2010;41:675–81.

    Article  CAS  Google Scholar 

  • Willner D, Hugenholtz P. Metagenomics and community profiling: culture-independent techniques in the clinical laboratory. Clin Microbiol Newsl. 2013;35:1–9.

    Article  Google Scholar 

  • Xing MN, Zhang XZ, Huang H. Application of metagenomic techniques in mining enzymes from microbial communities for biofuel synthesis. Biotechnol Adv. 2012;30:920–9.

    Article  PubMed  CAS  Google Scholar 

  • Yilmaz P, Kottmanna R, Pruesse E, et al. Analysis of 23S rRNA genes in metagenomes – a case study from the global ocean sampling expedition. Syst Appl Microbiol. 2011;34:462–9.

    Article  PubMed  CAS  Google Scholar 

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Correspondence to Navneet Batra .

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Batra, N., Bhatia, S., Behal, A., Singh, J., Joshi, A. (2013). Metagenomic Research: Methods and Ecological Applications. In: Nelson, K. (eds) Encyclopedia of Metagenomics. Springer, New York, NY. https://doi.org/10.1007/978-1-4614-6418-1_766-2

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  • DOI: https://doi.org/10.1007/978-1-4614-6418-1_766-2

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  • Online ISBN: 978-1-4614-6418-1

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