Encyclopedia of Metagenomics

Living Edition
| Editors: Karen E. Nelson

New Method for Comparative Functional Genomics and Metagenomics Using KEGG MODULE

  • Hideto Takami
Living reference work entry
DOI: https://doi.org/10.1007/978-1-4614-6418-1_183-3

Synonyms

Functional potential evaluator

Definition

Although one of the main goals of genomic analysis is to elucidate the comprehensive functions (functionome) in individual organisms or a whole community in various environments, a standard evaluation method for discerning the functional potentials harbored within the genome or metagenome has not yet been established. Thus, a new evaluation method for the potential functionome, based on the completion ratio of Kyoto Encyclopedia of Genes and Genomes (KEGG) functional modules, was developed. Basic methodology and application of this method for comparative functional genomics and metagenomics are expounded in this entry.

Introduction

One of the main goals of genomic and metagenomic analyses is to extract the comprehensive functions (functionome) harbored in an individual organism or a whole community in various environments. However, evaluating the potential functionome is still difficult when compared with the functional annotation of...

Keywords

Nicotinamide Adenine Dinucleotide Pathway Module Gaba Production Prokaryotic Species Completion Ratio 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.
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Copyright information

© Springer Science+Business Media New York 2014

Authors and Affiliations

  1. 1.Microbial Genome Research GroupJapan Agency for Marine-Earth Science and Technology (JAMSTEC)YokosukaJapan