Skip to main content
SpringerLink
Log in

Metagenomes: 23S Sequences

23S rRNA Genes in Metagenomes

  • Living reference work entry
  • First Online:
Encyclopedia of Metagenomics

  • 194 Accesses

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Log in via an institution

Institutional subscriptions

References

  • Amann R, Fuchs BM. Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques. Nat Rev Microbiol. 2008;6(5):339–48.

    Article  CAS  PubMed  Google Scholar 

  • Barr JJ, Blackall LL, et al. Further limitations of phylogenetic group-specific probes used for detection of bacteria in environmental samples. ISME J. 2010;4:959–61.

    Article  PubMed  Google Scholar 

  • DeLong E, Taylor L, et al. Visualization and enumeration of marine planktonic Archaea and Bacteria by using polyribonucleotide probes and fluorescent in situ hybridization. Appl Environ Microbiol. 1999;65(12):5554–63.

    CAS  PubMed Central  PubMed  Google Scholar 

  • Hunt DE, Klepac-Ceraj V, et al. Evaluation of 23S rRNA PCR primers for use in phylogenetic studies of bacterial diversity. Appl Environ Microbiol. 2006;72(3):2221–5.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Lane DJ. 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M, editors. Nucleic acid techniques in bacterial systematics. Chichester/New York: Wiley; 1991. p. 115–75.

    Google Scholar 

  • Ludwig W, Klenk HP. A phylogenetic backbone and taxonomic framework for prokaryotic systematics. In: Boone DR, Castenholz RW, editors. The Archaea and the deeply branching and phototrophic Bacteria. New York: Springer; 2001. p. 49–65.

    Google Scholar 

  • Ludwig W, Schleifer KH. Bacterial phylogeny based on 16S and 23S rRNA sequence analysis. FEMS Microbiol Rev. 1994;15(2–3):155–73.

    Article  CAS  PubMed  Google Scholar 

  • Ludwig W, Schleifer K. Phylogeny of Bacteria beyond the 16S rRNA standard. ASM News. 1999;65(11):752–7.

    Google Scholar 

  • Ludwig W, Rossello-Mora R, et al. Comparative sequence analysis of 23S rRNA from Proteobacteria. Syst Appl Microbiol. 1995;18:164–88.

    Article  CAS  Google Scholar 

  • Manz W, Amann R, et al. Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria: problems and solutions. Syst Appl Microbiol. 1992;15(4):593–600.

    Article  Google Scholar 

  • Pei A, Nossa CW, et al. Diversity of 23S rRNA genes within individual prokaryotic genomes. PLoS ONE. 2009;4(5):e5437.

    Article  PubMed Central  PubMed  Google Scholar 

  • Peplies J, Glöckner FO, et al. Comparative sequence analysis and oligonucleotide probe design based on 23S rRNA genes of Alphaproteobacteria from North Sea bacterioplankton. Syst Appl Microbiol. 2004;27(5):573–80.

    Article  CAS  PubMed  Google Scholar 

  • Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glöckner FO. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acid Res. 2013;41:D590–D596.

    Google Scholar 

  • Rijk P, Peer Y, et al. Evolution according to large tribosomal subunit RNA. J Mol Evol. 1995;41(3):366–75.

    Article  PubMed  Google Scholar 

  • Van Camp G, Chapelle S, et al. Amplification and sequencing of variable regions in bacterial 23S ribosomal RNA genes with conserved primer sequences. Curr Microbiol. 1993;27(3):147–51.

    Article  PubMed  Google Scholar 

  • Venter JC, Remington K, et al. Environmental genome shotgun sequencing of the Sargasso Sea. Science. 2004;304(5667):66–74.

    Article  CAS  PubMed  Google Scholar 

  • Yeates C, Saunders AM, et al. Limitations of the widely used GAM42a and BET42a probes targeting bacteria in the Gammaproteobacteria radiation. Microbiology. 2003;149(5):1239–47.

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

  1. Microbial Genomics and Bioinformatics Group, Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, 28359, Bremen, Germany

    Pelin Yilmaz & Frank Oliver Glöckner

  2. Jacobs University Bremen gGmbH, Campus Ring 1, 28759, Bremen, Germany

    Frank Oliver Glöckner

Authors
  1. Pelin Yilmaz
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. Frank Oliver Glöckner
    View author publications

    You can also search for this author in PubMed Google Scholar

Corresponding author

Correspondence to Pelin Yilmaz .

Editor information

Editors and Affiliations

  1. J. Craig Venter Institute (JCVI), Rockville, Maryland, USA

    Karen E. Nelson

Rights and permissions

Reprints and permissions

Copyright information

© 2012 Springer Science+Business Media New York

About this entry

Cite this entry

Yilmaz, P., Glöckner, F.O. (2012). Metagenomes: 23S Sequences. In: Nelson, K. (eds) Encyclopedia of Metagenomics. Springer, New York, NY. https://doi.org/10.1007/978-1-4614-6418-1_168-2

Download citation

  • DOI: https://doi.org/10.1007/978-1-4614-6418-1_168-2

  • Received:

  • Accepted:

  • Published:

  • Publisher Name: Springer, New York, NY

  • Online ISBN: 978-1-4614-6418-1

  • eBook Packages: Springer Reference Biomedicine and Life SciencesReference Module Biomedical and Life Sciences

Publish with us

Policies and ethics

Search

Navigation