References
Angly FE, Willner D, et al. The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes. PLoS Comput Biol. 2009;5(12):e1000593.
Danzeisen JL, Kim HB, et al. Modulations of the chicken cecal microbiome and metagenome in response to anticoccidial and growth promoter treatment. PLoS ONE. 2011;6(11):e27949.
Day JM, Ballard LL, et al. Metagenomic analysis of the turkey gut RNA virus community. Virol J. 2010;7:313.
Drasar BS, Barrow PA. The bacteria flora of the normal intestine. Washington, DC: American Society for Microbiology; 1985.
Gong JRJ, Forster, et al. Diversity and phylogenetic analysis of bacteria in the mucosa of chicken ceca and comparison with bacteria in the cecal lumen. FEMS Microbiol Lett. 2002;208(1):1–7.
Hofacre CL, Froyman R, et al. Use of Aviguard and other intestinal bioproducts in experimental Clostridium perfringens-associated necrotizing enteritis in broiler chickens. Avian Dis. 1998a;42(3):579–84.
Hofacre CL, Froyman R, et al. Use of aviguard, virginiamycin, or bacitracin MD against Clostridium perfringens-associated necrotizing enteritis. J Appl Poult Res. 1998b;7(4):412–8.
Karasov WH, Martinez del Rio C, et al. Ecological physiology of diet and digestive systems. Annu Rev Physiol. 2011;73:69–93.
Kim T, Mundt E. Metagenomic analysis of intestinal microbiomes in chickens. Methods Mol Biol. 2011;733:185–94.
Kohl KD. Diversity and function of the avian gut microbiota. J Comp Physiol B Biochem Syst Environ Physiol. 2012; 1–12.
Lan PTH, Hayashi, et al. Phylogenetic analysis of cecal microbiota in chicken by the use of 16S rDNA clone libraries. Microbiol Immunol. 2002;46(6):371–382.
Lee MD. Managing disease resistance: applying advanced methods to understand gastrointestinal microbial communities. The Netherlands: Wageningen Academic Publishers; 2008.
Lee M, Lu J, et al. Molecular basis for AGP effects in poultry. Antimicrob Growth Promoters Where Do We Go From Here? 2006;978(90–76989):149.
Lu JU, Idris, et al. Diversity and succession of the intestinal bacterial community of the maturing broiler chicken. Appl Environ Microbiol. 2003;69(11):6816–6824.
Lu J, Domingo JS. Turkey fecal microbial community structure and functional gene diversity revealed by 16S rRNA gene and metagenomic sequences. J Microbiol. 2008;46(5):469–77.
Lu J, Hofacre CL, et al. Emerging technologies in microbial ecology aid in understanding the effect of monensin on necrotic enteritis. J Appl Poult Res. 2006;15:145–53.
Martiny AC, Martiny JBH, et al. Frontiers: functional metagenomics reveals previously unrecognized diversity of antibiotic resistance genes in gulls. Front Antimicrob Resist Chemother Front Microbiol. 2011;2:(238):1–11.
Metchnikoff E. The prolongation of life. New York/London: G. P. Putnam's Sons/The Knickerbocker Press; 1908.
Patterson JA, Burkholder KM. Application of prebiotics and probiotics in poultry production. Poult Sci. 2003;82(4):627–31.
Preidis GA, Hill C, et al. Probiotics, enteric and diarrheal diseases, and global health. Gastroenterology. 2011;140(1):8–14.
Qu A, Brulc JM, et al. Comparative metagenomics reveals host specific metavirulomes and horizontal gene transfer elements in the chicken cecum microbiome. PLoS ONE. 2008;3(8):e2945.
Scupham AJ. Succession in the intestinal microbiota of preadolescent turkeys. FEMS Microbiol Ecol. 2007;60(1):136–47.
Scupham AJ, Patton TG, et al. Comparison of the cecal microbiota of domestic and wild turkeys. Microb Ecol. 2008;56(2):322–31.
Xu J, Gordon JI. Inaugural Article: Honor thy symbionts. Proc Natl Acad Sci U S A. 2003;100(18):10452–9.
Zhu XY, Joerger, RD. Composition of microbiota in content and mucus from cecae of broiler chickens as measured by fluorescent in situ hybridization with group-specific, 16S rRNA-targeted oligonucleotide probes. Poult Sci. 2003;82(8):1242–1249.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2014 Springer Science+Business Media New York
About this entry
Cite this entry
Lee, M.D. (2014). Terrestrial Vertebrate Animal Metagenomics, Domesticated Phasianidae. In: Nelson, K. (eds) Encyclopedia of Metagenomics. Springer, New York, NY. https://doi.org/10.1007/978-1-4614-6418-1_103-3
Download citation
DOI: https://doi.org/10.1007/978-1-4614-6418-1_103-3
Received:
Accepted:
Published:
Publisher Name: Springer, New York, NY
Online ISBN: 978-1-4614-6418-1
eBook Packages: Springer Reference Biomedicine and Life SciencesReference Module Biomedical and Life Sciences