Skip to main content

Biomarkers (Organic, Compound-Specific Isotopes)

  • Reference work entry
Encyclopedia of Geobiology

Part of the book series: Encyclopedia of Earth Sciences Series ((EESS))

Synonyms

Stable isotopes of individual biomarkers

Definition

Stable isotopes as opposed to radiogenic (unstable) isotopes do not decay; thus, their natural abundances stay relatively constant, even over geological time. However, variations in stable isotopic composition, or isotopic fractionation, occur in nature as a consequence of chemical and physical processes, due to different isotopes of an element having different physical and chemical properties. Equilibrium processes and kinetic processes can lead to isotopic fractionation. Equilibrium isotope effects occur as a result of temperature-dependent equilibrium isotope-exchange reactions resulting in a change of the isotope distribution between different chemical materials, between varying phases, or between individual molecules (Hoefs, 1987). For example, the equilibrium reaction:

$${\rm A}_1 + {\rm B}_2 \rightleftharpoons {\rm A}_2 + {\rm B}_1, $$

Subscripts indicate that A and B contain either the light (1) or heavy (2) isotope.

I...

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 449.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
USD 329.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Bibliography

  • Alexander, R., Kagi, R. I., and Larcher, A., 1984. Clay catalysis of alkylhydrogen exchange reactions - reaction mechanisms. Organic Geochemistry, 6, 755–760.

    Article  Google Scholar 

  • Alexander, R., Larcher, A. V., Kagi, R. I., and Price, P. L., 1988. The use of plant-derived biomarkers for correlation of oils with source rocks in the Cooper/Eromanga Basin system, Australia. APEA Journal, 28, 310–323.

    Google Scholar 

  • Alexander, R., Noble, R. A., and Kagi, R. I., 1987. Fossil resin biomarkers and their application to oil-source rock correlation, Gippsland Basin, Australia. APEA Journal, 27, 63–72.

    Google Scholar 

  • Aloisi, G., Bouloubassi, I., Heijs, S. K., Pancost, R. D., Pierre, C., Damste, J. S. S., Gottschal, J. C., Forney, L. J., and Rouchy, J. M., 2002. CH4-consuming microorganisms and the formation of carbonate crusts at cold seeps. Earth and Planetary Science Letters, 203, 195–203.

    Article  Google Scholar 

  • Andersen, N., Paul, H. A., Bernasconi, P., and Albrecht, P., 2001. Large and rapid climate variability during the Messinian salinity crisis: evidence from deuterium concentrations of individual biomarkers. Geology, 29, 799–802.

    Article  Google Scholar 

  • Armanios, C., Alexander, R., Kagi, R. I., and Sosrowidjojo, I., 1993. Molecular sieving of higher plant derived pentacyclics from crude oil. In: Oygard, K. (ed.), Organic Geochemistry. Hurtigtrykk, Norway: Falch, pp. 745–746.

    Google Scholar 

  • Asif, M., Grice, K., and Fazeelat, T., 2009. Assessment of petroleum biodegradation using stable hydrogen isotopes and polycyclic aromatic hydrocarbons. Organic Geochemistry, 40, 301–311.

    Article  Google Scholar 

  • Atahan, P., Grice, K., and Dodson, J., 2007. Human influence on Holocene environmental change in the Yangtze River delta: a combined biomarker, δ13C, 14C, pollen and charcoal approach. The Holocene, 17, 507–515.

    Article  Google Scholar 

  • Audino, M., Grice, K., Alexander, R., Boreham, C. J., and Kagi, R. I., 2001a. An unusual distribution of monomethylalkanes in Botryococcus Braunii-rich sediments. Geochimica et Cosmochimica Acta, 12, 1995–2006.

    Article  Google Scholar 

  • Audino, M., Grice, K., Alexander, R., and Kagi, R. I., 2001b. Macrocyclic alkanes: a new class of biomarker. Organic Geochemistry, 32, 759–763.

    Article  Google Scholar 

  • Audino, M., Grice, K., Alexander, R., and Kagi, R. I., 2002a. Macrocyclic alkanes: markers for the freshwater alga Botryococcus braunii in the Gippsland Basin. APPEA, 1, 67–71.

    Google Scholar 

  • Audino, M., Grice, K., Alexander, R., and Kagi, R. I., 2002b. Macrocyclic alkanes in crude oils from the algaenan of Botryococcus braunii. Organic Geochemistry, 33, 978–984.

    Article  Google Scholar 

  • Audino, M., Grice, K., Alexander, R., and Kagi, R. I., 2004. Macrocyclic alkanes in crude oils and sediment extracts: enrichment using molecular sieves. Organic Geochemistry, 35, 661–663.

    Article  Google Scholar 

  • Bechtel, A., Widera, M., Sachsenhofer, R. F., Gratzer, R., Lucke, A., and Woszczyk, M., 2007. Biomarker and stable carbon isotope systematics of fossil wood from the second Lusatian lignite seam of the Lubstow deposit (Poland). Organic Geochemistry, 38, 1850–1864.

    Article  Google Scholar 

  • Beramendi-Orosco, L., Snape, C. E., and Large, D. J., 2006. Stable carbon isotope analysis of wood hydropyrolysis residues: a potential indicator for the extent of cross-linking between lignin and polysaccharides. Organic Geochemistry, 37, 64–71.

    Article  Google Scholar 

  • Bidigare, R. R., Fluegge, A., Freeman, K. H., Hanson, K. L., Hayes, J. M., Hollander, D., Jasper, J. P., King, L. L., Laws, E. A., Milder, J., Millero, F. J., Pancost, R., Popp, B. N., Steinberg, P. A., and Wakeham, S. G., 1997. Consistent fractionation of 13C in nature and in the laboratory: Growth-rate effects in some haptophyte algae. Global Biogeochemical Cycles, 11, 279–292.

    Article  Google Scholar 

  • Bird, C. W., Lynch, J. M., Pirt, F. J., Reid, W. W., Brooks, C. J. W., and Middleditch, B. S., 1971. Steroids and squalene in Methylococcus capsulatus grown on methane. Nature, 230, 473–474.

    Article  Google Scholar 

  • Birgel, D., and Peckmann, J., 2008. Aerobic methanotrophy at ancient marine methane seeps: a synthesis. Organic Geochemistry, in press.

    Google Scholar 

  • Birgel, D., Thiel, V., Hinrichs, K.-U., Elvert, M., Campbell, K. A., Reitner, J., Farmer, J. D., and Peckmann, J., 2006. Lipid biomarker patterns of methane-seep microbialites from the Mesozoic convergent margin of California. Organic Geochemistry, 37, 1289–1302.

    Article  Google Scholar 

  • Boetius, A., Ravenschlag, K., Schubert, C. J., Rickert, D., Widdel, F., Gieseke, A., Amann, R., Jørgensen, B. B., Witte, U., and Pfannkuche, O., 2000. A marine microbial consortium apparently mediating anaerobic oxidation of methane. Nature, 407, 623–626.

    Article  Google Scholar 

  • Boreham, C. J., Summons, R. E., Roksandic, Z., Dowling, L. M., and Hutton, A. C., 1994. Chemical, molecular and isotopic differentiation of organic facies in the Tertiary lacustrine Duaringa oil shale deposit. Organic Geochemistry, 21, 685–712.

    Article  Google Scholar 

  • Brand, W. A., Tegtmeyer, A. R., and Hilkert, A., 1994. Compound specific isotope analysis: extending toward 15N/14N and 18O/16O. Organic Geochemistry, 21, 585–594.

    Article  Google Scholar 

  • Brassell, S. C., Eglinton, G., Marlowe, I. T., Pflaumann, U., and Sarnthein, M., 1986. Molecular stratigraphy: a new tool for climatic assessment, Nature, 320, 129–133.

    Article  Google Scholar 

  • Brocks, J. J., and Schaeffer, P., 2008. Okenane, a biomarker for purple sulfur bacteria (Chromatiaceae), and other new carotenoid derivatives from the 1,640 Ma Barney Creek Formation. Geochimica et Cosmochimica Acta, 72, 1396–1414.

    Article  Google Scholar 

  • Burgøyne, T. W., and Hayes, J. M., 1998. Quantitative production of H2 by pyrolysis of gas chromatographic effluents. Analytical Chemistry, 70, 5136–5141.

    Article  Google Scholar 

  • Chikaraishi, Y., and Naraoka, H., 2006. Carbon and hydrogen isotope variation of plant biomarkers in a plant–soil system. Chemical Geology, 231, 190–202.

    Article  Google Scholar 

  • Chikaraishi, Y., Naraoka, H., and Poulson, S. R., 2004a. Carbon and hydrogen isotopic fractionation during lipid biosynthesis in a higher plant (Cryptomeria japonica). Phytochemistry, 65, 323–330.

    Article  Google Scholar 

  • Chikaraishi, Y., Naraoka, H., and Poulson, S. R., 2004b. Hydrogen and carbon isotopic fractionations of lipid biosynthesis among terrestrial (C3, C4 and CAM) and aquatic plants. Phytochemistry, 65, 1369–1381.

    Article  Google Scholar 

  • Collister, J. W., Rieley, G., Stern, B., Eglinton, G., and Fry, B., 1994. Compound- specific δ13C analyses of leaf lipids from plants with different carbon dioxide metabolisms. Organic Geochemistry, 21, 619–627.

    Article  Google Scholar 

  • Collister, J. W., Summons, R. E., Lichtfouse, E., and Hayes, J. M., 1992. An isotopic biogeochemical study of the Green River oil shale. Organic Geochemistry, 19, 265–276.

    Article  Google Scholar 

  • Conte, M. H., Weber, J. C., Carlson, P. J., and Flanagan, L. B., 2003. Molecular and carbon isotopic composition of leaf wax in vegetation and aerosols in a northern prairie ecosystem. Oecologia, 135, 67–77.

    Google Scholar 

  • Coolen, M. J. L., Hopmans, E. C., Rijpstra, W. I. C., Muyzer, G., Schouten, S., Volkman, J. K., and Damste, J. S. S., 2004. Evolution of the methane cycle in Ace Lake (Antarctica) during the Holocene: response of methanogens and methanotrophs to environmental change. Organic Geochemistry, 35, 1151–1167.

    Article  Google Scholar 

  • Craig, H., 1957. Isotopic standards for carbon and oxygen and correction factors for mass-spectrometric analysis of carbon dioxide. Geochimica et Cosmochimica Acta, 12, 133–149.

    Article  Google Scholar 

  • Dawson, D., Grice, K., Wang, S. X., Alexander, R., and Radke, J., 2004. Stable hydrogen isotopic composition of hydrocarbons in torbanites (Late Carboniferous to Late Permian) deposited under various climatic conditions. Organic Geochemistry, 35, 2189–2197.

    Article  Google Scholar 

  • Dawson, D., Grice, K., and Alexander, R., 2005. Effect of maturation on the indigenous δD signatures of individual hydrocarbons in sediments and crude oils from the Perth Basin (Western Australia). Organic Geochemistry, 36, 95–104.

    Article  Google Scholar 

  • Dawson, D., Grice, K., Edwards, D. S., and Alexander, R., 2007. The effect of source and maturity on the stable isotopic compositions of individual hydrocarbons in sediments and crude oils from the Vulcan Sub-basin, Timor Sea, Northern Australia. Organic Geochemistry, 38, 1015–1038.

    Article  Google Scholar 

  • de Leeuw, J. W., van der Meer, F. W., Rijpstra, W. I. C., and Schenck, P. A., 1980. On the occurrence and structural identification of long chain unsaturated ketones and hydrocarbons in sediments. In Douglas, A. G., and Maxwell, J. R. (eds.), Advances in Organic Geochemistry 1979. Oxford: Pergamon Press, pp. 211–217.

    Google Scholar 

  • Dongmann, G., Nurnber, H. W., Forstel, H., and Wagner, K., 1974. The contribution of land photosynthesis to the stationary enrichment of 18O in the atmosphere. Radiation and Environmental Biophysics, 11, 41–52.

    Article  Google Scholar 

  • Dowling, L. M., Boreham, C. J., Hope, J. M., Murray, A. P., and Summons, R. E., 1995. Carbon isotopic composition of hydrocarbons in ocean-transported bitumens from the coastline of Australia. Organic Geochemistry, 23, 729–737.

    Article  Google Scholar 

  • Eglinton, G., and Hamilton, R. J., 1967. Leaf epicuticular waxes. Science, 156, 1322–1335.

    Article  Google Scholar 

  • Ehleringer, J. R., Hall, A. E., and Farquhar, G. D., 1993. Stable Isotopes and Plant-Carbon Water Relations. San Diego: Academic Press.

    Google Scholar 

  • Ellis, L., Alexander, R., and Kagi, R. I., 1994. Separation of petroleum hydrocarbons using dealuminated mordenite molecular sieve-II. Alkylnaphthalenes and alkylphenanthrenes. Organic Geochemistry, 21, 849–855.

    Article  Google Scholar 

  • Estep, M. F., and Hoering, T. C., 1980. Biogeochemistry of the stable hydrogen isotopes. Geochimica et Cosmochimica Acta, 44, 1197–1206.

    Article  Google Scholar 

  • Evans, M. C. W., Buchanan, B. B., and Arnon, D. I., 1966. A new ferredoxin-dependent carbon reduction cycle in a photosynthetic bacterium. Biochemistry, 55, 928–934.

    Google Scholar 

  • Feakins, S. J., deMenocal, P. B., and Eglinton, T. I., 2005. Biomarker records of late Neogene change in northeast Africa vegetation. Geology, 33, 977–980.

    Article  Google Scholar 

  • Ficken, K. J., Barber, K. E., and Eglinton, G., 1998. Lipid biomarker, δ 13C and plant macrofossil stratigraphy of a Scottish montane peat bog over the last two millennia. Organic Geochemistry, 28, 217–237.

    Article  Google Scholar 

  • Freeman, K. H., Hayes, J. M., Trendel, J. M., and Albrecht, P., 1990. Evidence from carbon isotope measurements for diverse origins of sedimentary hydrocarbons. Nature, 343, 254–256.

    Article  Google Scholar 

  • Freeman, K. H., Wakeham, S. G., and Hayes, J. M., 1994. Predictive isotope biogeochemistry: hydrocarbons from anoxic marine basins. Organic Geochemistry, 21, 629–644.

    Article  Google Scholar 

  • Fusetti, L., Behar, F., Grice, R. K., and Derenne, S., 2010a. New insights into secondary gas generation from oil thermal cracking. A kinetic approach using 1,2,4-trimethylbenzene. Part II: A lumped kinetic scheme. Organic Geochemistry, 41, 168–176.

    Google Scholar 

  • Fusetti, L., Behar, F., Grice, K., and Derenne, S., 2010b. New insights into secondary gas generation from oil thermal cracking. A kinetic approach using 1,2,4-trimethylbenzene. Part III. Organic Geochemistry, 41, 431–436.

    Google Scholar 

  • Galimov, E. M., 2006. Isotope organic geochemistry. Organic Geochemistry, 37, 1200–1262.

    Article  Google Scholar 

  • Galimov, E. M., and Kvenvolden, K. A., 1983. Concentrations and carbon isotopic composition of CH4 and CO2 in gas from sediments of the Blake Outer Ridge. In Sheridan, R. E., and Gradstein, F. M. et al. (eds.), Initial Reports of the Deep Sea Drilling Project, 76. Washington: US Government Printing Office, pp. 403–417.

    Google Scholar 

  • Games, L. M., and Hayes, J. M., 1978. Methane-producing bacteria: natural fractionations of the stable carbon isotopes. Geochimica et Cosmochimica Acta, 42, 1295–1297.

    Article  Google Scholar 

  • Goericke, R., Montoya, J. P., and Fry, B., 1994. Physiology of isotopic fractionation in algae and cyanobacteria. In Lajtha, K., and Micener, R. H. (eds.), Stable Isotopes in Ecology and Environmental Science. Oxford: Blackwell Scientific Publications, pp. 187–221.

    Google Scholar 

  • Greenwood, P. F., Leenheer, J. A., McIntyre, C., Berwick, L., and Franzmann, P. D., 2006. Bacterial biomarkers thermally released from dissolved organic matter. Organic Geochemistry, 37, 597–609.

    Article  Google Scholar 

  • Grice, K., Audino, M., Alexander, R., Boreham, C. J., and Kagi, R. I., 2001. Distributions and stable carbon isotopic compositions of biomarkers in torbanites from different palaeogeographical locations. Organic Geochemistry, 32, 195–2110.

    Article  Google Scholar 

  • Grice, K., Backhouse, J., Alexander, R., Marshall, N., and Logan, G. A., 2005b. Correlating terrestrial signatures from biomarker distributions, δ13C, and palynology in fluvio-deltaic deposits from NW Australia (Triassic-Jurassic). Organic Geochemistry, 36, 1347–1358.

    Article  Google Scholar 

  • Grice, K., Cao, C., Love, G. D., Bottcher, M. E., Twitchett, R., Grosjean, E., Summons, R., Turgeon, S., Dunning, W. J., and Jin, Y., 2005a. Photic zone euxinia during the Permian-triassic superanoxic event. Science, 307, 706–709.

    Article  Google Scholar 

  • Grice, K., De Mesmay, R., Wang, S., and de Glucina, A., 2008a. New 5A molecular sieving method for CSIA. Organic Geochemistry, 39, 284–288.

    Article  Google Scholar 

  • Grice, K., Gibbison, R., Atkinson, J. E., Eckardt, C. B., Schwark, L., Schwark, L., and Maxwell, J. R., 1996a. 1H-Pyrrole-2,5-diones (maleimides) as indicators of anoxygenic photosynthesis in palaeowater columns. Geochimica et Cosmochimica Acta, 60, 3913–3924.

    Article  Google Scholar 

  • Grice, K., Klein Breteler, W. C., Schouten, S., Grossi, V., De Leeuw, J. W., and Sinninghe-Damsté, J. S., 1998a. The effects of zooplankton herbivory on biomarker proxy records. Paleoceanography, 13, 686–693.

    Article  Google Scholar 

  • Grice, K., Lu, H., Atahan, P., James, E., Hallmann, C., Greenwood, P. F., Maslen, E., and Dodson, J., 2008b. A molecular marker for lignin degradation and the evolution of vascular plants. Earth and Planetary Science Letters, submitted.

    Google Scholar 

  • Grice, K., Schaeffer, P., Schwark, L., and Maxwell, J. R., 1996b. Molecular indicators of palaeoenvironmental conditions in an immature Permian shale (Kupferschiefer, Lower Rhine Basin, N.W. Germany) from free and sulfide-bound lipids. Organic Geochemistry, 25, 131–147.

    Article  Google Scholar 

  • Grice, K., Schaeffer, P., Schwark, L., and Maxwell, J. R., 1997. Changes in palaeoenvironmental conditions during deposition of the Permian Kupferschiefer (Lower Rhine Basin, N.W. Germany) inferred from molecular and isotopic compositions of biomarker components. Organic Geochemistry, 26, 677–690.

    Article  Google Scholar 

  • Grice, K., Schouten, S., Blokker, P., Derenne, S., Largeau, C., Nissenbaum, A., Sinninghe-Damsté, J. S., 2003. Structural and isotopic analysis of kerogens in sediments rich in free sulfurised Botryococcus braunii biomarkers. Organic Geochemistry, 34, 471–482.

    Article  Google Scholar 

  • Grice, K., Schouten, S., Nissenbaum, A., Charach, J., and Sinninghe-Damsté, J. S., 1998b. A remarkable paradox: freshwater algal (Botryococcus braunii) lipids in an ancient hypersaline euxinic ecosystem. Organic Geochemistry, 28, 195–216.

    Article  Google Scholar 

  • Grice, K., Schouten, S., Nissenbaum, A., Charach, J., and Sinninghe-Damsté, J. S., 1998c. Isotopically heavy carbon in the C21 to C25 regular isoprenoids in halite-rich deposits from the Sdom Formation, Dead Sea Basin, Israel. Organic Geochemistry, 28, 349–359.

    Article  Google Scholar 

  • Grice, K., Schouten, S., Peters, K. E., and Sinninghe-Damsté, J. S., 1998d. Molecular isotopic characterisation of hydrocarbon biomarkers in Palaeocene-Eocene evaporitic lacustrine source rocks from the Jianghan Basin, China. Organic Geochemistry, 29, 1397–1406.

    Article  Google Scholar 

  • Grice, K., Schouten, S., Wong, C., Stuart-Williams, H., and Farquhar, G. D., 2003. Compound specific D/H isotopes of lipids and carbohydrates from extant plants grown under controlled conditions’, 21st International Meeting on Organic Geochemistry. Krakow: Society of Research on Environmental Changes “Geosphere”, pp. 47–48.

    Google Scholar 

  • Grice, K., Lu, H., Zhou, Y., Stuart Williams, H., and Farquhar, G. D., 2008c. Biosynthetic and environmental effects on the stable carbon isotopic compositions of the anteiso- (3-methyl) and iso- (2-methyl) alkanes in tobacco leaves. Phytochemistry, 69, 2807–2814.

    Article  Google Scholar 

  • Grice, K., Lu, H., Atahan, P., Hallmann, C., Asif, M., Greenwood, P. F., Tulipani, S., Maslen, E., Williford, K. H., and Dodson, J., 2009. New insights into the origin of perlyene in geological samples. Geochimica et Cosmochimica Acta, 73, 6531–6543.

    Article  Google Scholar 

  • Hartgers, W. A., Sinninghe Damsté, J. S., and de Leeuw, J. W., 1994a. A molecular and carbon isotopic study towards the origin and diagenetic fate of diaromatic carotenoids. Organic Geochemistry, 22, 703–725.

    Article  Google Scholar 

  • Hartgers, W. A., Sinninghe Damsté, J. S., Requejo, A. G., Allan, J., Hayes, J. M., and de Leeuw, J. W., 1994b. Evidence for only minor contributions from bacteria to sedimentary organic carbon. Nature, 369, 224–227.

    Article  Google Scholar 

  • Harvey, H. R., and McManus, G. B., 1991. Marine ciliates as a widespread source of tetrahymanol and hopan-3-β-ol in sediments. Geochimica et Cosmochimica Acta, 55, 3387–3390.

    Article  Google Scholar 

  • Hayes, J. M., 1983. In Meinschein, W. G. (ed.), Organic Geochemistry of Contemporaneous and Ancient Sediments, Great Lakes Section. Bloomington, Indiana: Society of Economic Palaeontologists and Mineralogists, pp. 5–31.

    Google Scholar 

  • Hayes, J. M., 1993. Factors controlling 13C contents of sedimentary organic compounds: principles and evidence. Marine Geology, 113, 111–125.

    Article  Google Scholar 

  • Hayes, J. M., 2001. Fractionation of carbon and hydrogen isotopes in biosynthetic processes. In Valley, J. W., and Cole, D. R. (eds.), Reviews in Mineralogy and Geochemistry 43, Stable Isotope Geochemistry, Washington: The Mineralogical Society of America, pp. 225–277.

    Google Scholar 

  • Hayes, J. M., Freeman, K. H., Popp, B. N., and Hoham, C. H., 1990. Compound-specific isotopic analyses: a novel tool reconstruction of ancient biogeochemical processes. Organic Geochemistry, 16, 115–1128.

    Article  Google Scholar 

  • Hinrichs, K.-U., Hayes, J. M., Sylva, S. P., Brewer, P. G., and DeLong, E. F., 1999. Methane-consuming archaebacteria in marine sediments. Nature, 398, 802–805.

    Article  Google Scholar 

  • Hoefs, J., 1987. Stable Isotope Geochemistry. Berlin: Springer-Verlag.

    Book  Google Scholar 

  • Hoefs, M. E. L., Schouten, S., King, L. L., Wakeham, S. G., de Leeuw, J. W., and Sinninghe Damsté J. S., 1997. Ether lipids of pelagic archeae in marine water columns. Applied Environmental Microbiology, 63, 3090–3095.

    Google Scholar 

  • Horsfield, B., and Dueppenbecker, S. J., 1991. The decomposition of posidonia shale and green river shale kerogens using microscale sealed vessel (MSSV) pyrolysis. Journal of Analytical Application of Pyrolosisosis, 20, 107–123.

    Article  Google Scholar 

  • Hou, J., Huang, Y., and Wang, Y., 2006. Postglacial climate reconstruction based on compound-specific D/H ratios of fatty acids from Blood Pond, New England. Geochemistry Geophysics Geosystems, 7, Q03008.

    Article  Google Scholar 

  • Huang, Y., DuPont, L., Sarnthein, M., Hayes, J. M., and Eglinton, G., 2000. Mapping of C4 plant input from North West Africa into North East Atlantic sediments. Geochimica et Cosmochimica Acta, 64, 3505–3513.

    Article  Google Scholar 

  • Huang, Y., Murray, M., and Eglinton, G., 1995. Sacredicene, a novel monocyclic C33 hydrocarbon from sediment of Sacred Lake, a tropical freshwater lake, Mount Kenya. Tetrahedron Letters, 36, 5973–5976.

    Google Scholar 

  • Huang, Y., Shuman, B., Wang, Y., and Webb III, T., 2002. Hydrogen isotope ratios of palmitic acid in lacustrine sediments record late Quaternary climate variations. Geology, 30, 1103–1106.

    Article  Google Scholar 

  • Huang, Y., Shuman, B., Wang, Y., Webb III, T., Grimm, E. C., and Jacobson, G. L., 2006. Climatic and environmental controls on the variation of C3 and C4 plant abundances in central Florida for the past 62,000 years. Palaeogeography, Palaeoclimatology, Palaeoecology, 237, 428–435.

    Article  Google Scholar 

  • Huang, Y., Street-Perrott, F. A., Perrott, R. A., Metzger, P., and Eglinton, G., 1999. Glacial-interglacial environmental changes inferred from molecular and compound-specific δ13C analyses of sediments from Sacred Lake, Mt. Kenya. Geochimica et Cosmochimica Acta, 63, 1383–1404.

    Article  Google Scholar 

  • Inaba, T., and Suzuki, N., 2003. Gel permeation chromatography for fractionation and isotope ratio analysis of steranes and triterpanes in oils. Organic Geochemistry, 34, 635–641.

    Article  Google Scholar 

  • Jaffé, R., Mead, R., Hernandez, M. E., Peralba, M. C., DiGuida, O. A., Carter, J. F., and Eglinton, G., 2001. Origin and transport of sedimentary organic matter in two subtropical estuaries: a comparative, biomarker-based study. Organic Geochemistry, 32, 507–526.

    Article  Google Scholar 

  • Jahnke, L. L., Summons, R. E., Hope, J. M., and Des Marais, D. J., 1999. Carbon isotopic fractionation in lipids from methanotrophic bacteria II: the effects of physiology and environmental parameters on the biosynthesis and isotopic signatures of biomarkers. Geochimica et Cosmochimica Acta, 63, 79–93.

    Article  Google Scholar 

  • Jasper, J. P., and Hayes, J. M., 1990. A carbon isotope record of CO2 levels during the late Quaternary. Nature, 347, 462–464.

    Article  Google Scholar 

  • Jasper, J. P., Hayes, J. M., Mix, A. C., and Prahl, F. G., 1994. Photosynthetic fractionation of 13C and concentrations of CO2 in central equatorial Pacific during the last 225,000 years. Paleocean, 9, 781–898.

    Article  Google Scholar 

  • Jones, D. M., Carter, J. F., Eglinton, G., Jumeau, E. J., and Fenwick, C. S., 1991. Determination of δ13C values of sedimentary straight chain and cyclic alcohols by gas chromatography/isotope ratio mass spectrometry. Biological Mass Spectrometry, 20, 641–646.

    Article  Google Scholar 

  • Kashiyama, Y., Ogawa, N. O., Kuroda, J., Shiro, M., Nomoto, S., Tada, R., Kitazato, H., and Ohkouchi, N., 2007. Diazotrophic cyanobacteria as the major photoautotrophs during mid-Cretaceous oceanic anoxic events: nitrogen and carbon isotopic evidence from sedimentary porphyrin. Organic Geochemistry, in press.

    Google Scholar 

  • Knoll, A. H., Bambach, R. K., Canfield, D. E., and Grotzinger, J. P., 1996. Comparative earth history and Late Permian mass extinction. Science, 273, 452–457.

    Article  Google Scholar 

  • Kump, L. R., Pavlov, A., and Arthur, M. A., 2005. Massive release of hydrogen sulfide to the surface ocean and atmosphere during intervals of oceanic anoxia. Geology, 33, 397–400.

    Article  Google Scholar 

  • Kuypers, M. M. M., Blokker, P., Erbacher, J., Kinkel, H., Pancost, R. D., Schouten, S., and Sinninghe Damsté, J. S., 2001. Massive expansion of marine archaea during a mid-Cretaceous oceanic anoxic event. Science, 293, 92–94.

    Article  Google Scholar 

  • Laws, E. A., Popp, B. N., Bigidare, R. R., Kennicutt, M. C., and Macko, S. A., 1995. Dependence of phytoplankton isotopic composition on growth rate and [CO2]aq: theoretical considerations and experimental results. Geochimica et Cosmochimica Acta, 59, 1131–1138.

    Article  Google Scholar 

  • Leif, R. N., and Simoneit, R. T., 2000. The role of alkenes produced during hydrous pyrolysis of a shale. Organic Geochemistry, 31, 1189–1208.

    Article  Google Scholar 

  • Lichtfouse, É., 1995. 13C labeling of soil n-hentriacontane (C31) by maize cultivation. Tetrahedron Letters, 36, 529–530.

    Article  Google Scholar 

  • Lichtfouse, É., 1997. Heterogeneous turnover of molecular organic substances from crop soils as revealed by 13C labeling at natural abundance with Zea mays. Naturwissenschaften, 84, 23–35.

    Article  Google Scholar 

  • Lichtfouse, É., 1998. Isotope and biosynthetic evidence for the origin of long-chain aliphatic lipids in soils. Naturwissenschaften, 85, 76–77.

    Article  Google Scholar 

  • Love, G. D., Bowden, S. A., Jahnke, L. L., Snape, C. E., Campbell, C. N., Day, J. G., and Summons, R. E., 2005. A catalytic hydropyrolysis method for the rapid screening of microbial cultures for lipid biomarkers. Organic Geochemistry, 36, 63–82.

    Article  Google Scholar 

  • Liu, W., and Huang, Y., 2005. Compound specific D/H ratios and molecular distributions of higher plant leaf waxes as novel paleoenvironmental indicators in the Chinese Loess Plateau. Organic Geochemistry, 36, 851–860.

    Article  Google Scholar 

  • Marlowe, I. T., Brassell, S. C., Eglinton, G., and Green, J. C., 1990. Long-chain alkenones and alkyl alkenoates and the fossil coccolith record of marine sediments. Chemical Geology, 88, 349–375.

    Article  Google Scholar 

  • Maslen, E., Grice, K., Gale, J., Hallmann, C., and Horsfield, B., 2009. Crocetane: A potential marker of photic zone euxinia in thermally mature sediments and crude oils of Devonian age. Organic Geochemistry, 49, 1–17.

    Article  Google Scholar 

  • Matthews, D. E., and Hayes, J. M., 1978. Isotope-ratio monitoring gas chromatography-mass spectrometry. Analytical Chemistry, 50, 1465–1473.

    Article  Google Scholar 

  • Melzer, E., and Schmidt, H. L., 1987. Carbon isotope effects on the pyruvate dehydrogenase reaction and their importance relative to the 13C depletion in lipids. The Journal of Biological Chemistry, 262, 8159–8164.

    Google Scholar 

  • Meredith, W., Sun, C. G., Snape, C. E., Sephton, M. A., and Love, G. D., 2006. The use of model compounds to investigate the release of covalently bound biomarkers via hydropyrolysis. Organic Geochemistry, 37, 1705–1714.

    Article  Google Scholar 

  • Merrit, D. A., 1993. Continuous and Highly Precise Analysis of Stable Isotopes of Carbon and Nitrogen in Gas Chromatographic Effluents. PhD Thesis. Indiana University, Bloomington.

    Google Scholar 

  • Monson, K. D., and Hayes, J. M., 1982. Carbon isotopic fractionation in the biosynthesis of bacterial fatty acids. Ozonolysis of unsaturated fatty acids as a means of determining the intramolecular distribution of carbon isotopes. Geochimica et Cosmochimica Acta, 46, 139–149.

    Article  Google Scholar 

  • Murray, A. P., Edwards, D., Hope, J. M., Boreham, C. J., Boothe, W. E., Alexander, R. A., and Summons, R. E., 1998. Carbon isotope biogeochemistry of plant resins and derived hydrocarbons. Organic Geochemistry, 29, 1199–1214.

    Article  Google Scholar 

  • Nabbefeld, B., Grice, K., Schimmelmann, A., Sauer, P. E., Böttcher, M. E., and Twitchett, R. J., 2010a. Significance of δDkerogen, δ13Ckerogen and δ34Spyrite from several Permian/Triassic (P/Tr) sections. Earth and Planetary Science Letters, 295, 21–29.

    Article  Google Scholar 

  • Nabbefeld, B., Grice, K., Twitchett, R. J., Summons, R. E., Hays, L., Böttcher, M. E., and Muhammad, A., 2010b. An integrated biomarker, isotopic and palaeoenvironmental study through the Late Permian event at Lusitaniadalen, Spitsbergen. Earth and Planetary Science Letters, 291, 84–96.

    Article  Google Scholar 

  • Nichols, P. D., Volkman, J. K., Palmisano, A. C., Smith, G. A., and White, D. C., 1988. Occurrence of an isoprenoid C25 di-unsaturated alkene and high neutral lipid content in Antarctic sea-ice diatom communities. Journal of Phycology, 24, 90–96.

    Article  Google Scholar 

  • Niemann, H., and Elvert, M., 2008. Diagnostic lipid biomarker and stable carbon isotope signatures of microbial communities mediating the anaerobic oxidation of methane with sulphate. Organic Geochemistry, in press.

    Google Scholar 

  • Noble, R. A., Wu, C. H., and Atkinson, C. D., 1991. Petroleum generation and migration from Talang Akar coals and shales offshore N.W. Java, Indonesia. Organic Geochemistry, 17, 363–374.

    Article  Google Scholar 

  • Ohkouchi, N., Kahiyama, Y., Chikaraishi, Y., Ogawa, N. O., Tada, R., and Kitazato, H., 2006. Nitrogen isotopic composition of chlorophylls and porphyrins in geological samples as tools for reconstructing paleoenvironment. Geochimica et Cosmochimica Acta, 70, A452.

    Article  Google Scholar 

  • Ohkouchi, N., Nakajima, Y., Ogawa, N. O., Chikaraishi, Y., Suga, H., Sakai, S., and Kitazato, H., 2007. Carbon isotopic composition of the tetrapyrrole nucleus in chloropigments from a saline meromictic lake: a mechanistic view for interpreting the isotopic signature of alkyl porphyrins in geological samples. Organic Geochemistry, in press.

    Google Scholar 

  • Oren, A., 1993. Availability, uptake and turnover of glycerol in hypersaline environment. FEMS Microbiology Ecology, 12, 15–23.

    Article  Google Scholar 

  • Orphan, V. J., Hinrichs, K.-U., Ussler III, W., Paull, C. K., Taylor, L. T., Sylva, S. P., Hayes, J. M., and DeLong, E. F., 2001. Comparative analysis of methane-oxidizing archaea and sulfate-reducing bacteria in anoxic sediments. Applied Environmental Microbiology, 67, 1922–1934.

    Article  Google Scholar 

  • Pagani, M., Pedentchouk, N., Huber, M., Sluijs, A., Schouten, S., Brinkhuis, H., Sinninghe Damsté, J. S., and Dickens, G. R., 2006. The Expedition 302 Scientists. Arctic hydrology during global warming at the Palaeocene/Eocene thermal maximum. Nature, 442, 671–675.

    Article  Google Scholar 

  • Peckmann, J., and Thiel, V., 2004. Carbon cycling at ancient methane-seeps. Chemical Geology, 205, 443–467.

    Article  Google Scholar 

  • Peckmann, D., Thiel, V. W., Clari, P., Gaillard, C., Martire, L., and Reitner, J., 1999. Cold seep deposits of Beauvoisin (Oxfordian; southeastern France) and Marmorito (Miocene; northern Italy): microbially induced authigenic carbonates. International Journal of Earth Sciences, 88, 60–75.

    Article  Google Scholar 

  • Pedentchouk, N., Freeman, K. H., and Harris, N. B., 2006. Different response of δD values of n-alkanes, isoprenoids, and kerogen during thermal maturation. Geochimica et Cosmochimica Acta, 70, 2063–2072.

    Article  Google Scholar 

  • Pedentchouk, N., Sumner, W., Tipple, B., and Pagani, M., 2008. δ13C and δD compositions of n-alkanes from modern angiosperms and conifers: an experimental set up in central Washington State, USA. Organic Geochemistry, in press.

    Google Scholar 

  • Popp, B. N., Laws, E. A., Bidigare, R. R., Dore, J. E., Hanson, K. L., and Wakeham, S. G., 1998. Effect of phytoplankton cell geometry on carbon isotopic fractionation. Geochimica et Cosmochimica Acta, 62, 69–79.

    Article  Google Scholar 

  • Prosser, S. J., and Scrimgeour, C. M., 1995. High-precision determination of 2H/1H in H2 and H2O by continuous-flow isotope ratio mass spectrometry. Analytical Chemistry, 67, 992–1997.

    Article  Google Scholar 

  • Quandt, L., Gottschalk, G., Ziegler, H., and Stichler, W., 1977. Isotope discrimination by photosynthetic bacteria. FEMS Microbiology Letters, 1, 125–128.

    Article  Google Scholar 

  • Quénéa, K., Largeau, C., Derenne, S., Spaccini, R., Bradoux, G., and Mariotti, A., 2006. Molecular and isotopic study of lipids in particle size fractions of a sandy cultivated soil (Cestas cultivation sequence, southwest France): Sources, degradation, and comparison with Cestas forest soil. Organic Geochemistry, 37, 20–44.

    Article  Google Scholar 

  • Ramos, C. S., Parrish, C. C., Quibuyen, T. A. O., and Abrajano, T. A., 2003. Molecular and carbon isotopic variations in lipids in rapidly settling particles during a spring phytoplankton bloom. Organic Geochemistry, 34, 195–207.

    Article  Google Scholar 

  • Rechka, J. A., and Maxwell, J. R., 1988a. Characterisation of alkenone temperature indicators in sediments and organisms. In Mattavelli, L., and Novelli, L (eds.),. Advances in Organic Geochemistry 1987. Organic Geochemistry, 13, 727–734.

    Google Scholar 

  • Rechka, J. A., and Maxwell, J. R., 1988b. Unusual long chain ketones of algal origin. Tetrahedron Letters, 29, 2599–2600.

    Article  Google Scholar 

  • Reitner, J., Peckmann, J., Blumenberg, M., Michaelis, W., Reimer, A., and Thiel, V., 2005. Concretionary methane-seep carbonates and associated microbial communities in Black Sea sediments. Palaeogeography, Palaeoclimatology, Palaeoecology, 227, 18–30.

    Article  Google Scholar 

  • Rieley, G., 1994. Derivatisation of organic compounds prior togas-chromatographic combustion-isotope ratio mass spectrometric analysis - identification of isotope fractionation processes. Analyst, 119, 915–919.

    Article  Google Scholar 

  • Rigby, D., Batts, B. D., and Smith, J. W., 1981. The effect of maturation on the isotopic composition of fossil fuels. Organic Geochemistry, 3, 29–36.

    Article  Google Scholar 

  • Ritger, S., Carson, B., and Suess, E., 1987. Methane-derived authigenic carbonates formed by subduction-induced pore-water expulsion along the Oregon/Washington margin. Geological Society of America Bulletin, 98, 147–156.

    Article  Google Scholar 

  • Robson, J. N., and Rowland, S. J., 1986. Identification of novel widely distributed sedimentary acyclic sesterpenoids. Nature, 324, 561–563.

    Article  Google Scholar 

  • Rommerskirchen, F., Eglinton, G., and Dupont, L., 2006. Glacial/interglacial changes in southern Africa: Compound-specific delta C-13 land plant biomarker and pollen records from southeast Atlantic continental margin sediments. Geochemistry, Geophysics, Geosystems, 7, Q08010.

    Article  Google Scholar 

  • Rowland, S. J., Yon, D. A., Lewis, C. A., and Maxwell, J. R., 1985. Occurrence of 2,6,10-trimethyl-7-(3-methylbutyl)-dodecane and related hydrocarbons in the green alga Enteromorpha prolifera and sediments. Organic Geochemistry, 8, 207–213.

    Article  Google Scholar 

  • Sachse, D., Radke, J., and Gleixner, G., 2006. δD values of individual n-alkanes from terrestrial plants along a climatic gradient – implications for the sedimentary biomarker record. Organic Geochemistry, 37, 469–483.

    Article  Google Scholar 

  • Sachse, D., Radke, J., Gaupp, R., Schwark, L., Lüniger, G., and Gleixner, G., 2004. Reconstruction of palaeohydrological conditions in a lagoon during the 2nd Zechstein cycle through simultaneous use of δD values of individual n-alkanes and δ 18O and δ 13C values of carbonates. International Journal of Earth Sciences, 93, 554–564.

    Google Scholar 

  • Santos Neto, E. V., and Hayes, J. M., 1999. Use of hydrogen and carbon stable isotopes characterizing oils from the Potiguar Basin (onshore), Northeastern Brazil. AAPGB, 83, 496–518.

    Google Scholar 

  • Santos Neto, E. V., Hayes, J. M., and Takaki, T., 1998. Isotopic biogeochemistry of the Neocomian lacustrine and Upper Aptian marine-evaporitic sediments of the Potiguar Basin, Northeastern Brazil. Organic Geochemistry, 28, 361–381.

    Article  Google Scholar 

  • Sauer, P. E., Eglinton, T. I., Hayes, J. M., Schimmelmann, A., and Sessions, A. L., 2001. Compound-specific D/H ratios of lipid biomarkers from sediments as a proxy for environmental and climatic conditions. Geochimica et Cosmochimica Acta, 65, 213–222.

    Article  Google Scholar 

  • Schaeffer, P., Adam, P., Werung, P., Bernasconi, S., and Albrecht, P., 1997. Molecular and isotopic investigation of free and S-bound lipids from an actual meromictic lake (Lake Cadagno, Switzerland). In Advances of Organic Geochemistry. 18 th International Meeting on Organic Geochemistry. pp. 57–58.

    Google Scholar 

  • Schefuß, E., Schouten, S., Jansen, J. H. F., and Sinninghe Damsté, J. S., 2003. African vegetation controlled by tropical sea surface temperatures in the mid-Pleistocene period. Nature, 422, 418–421.

    Article  Google Scholar 

  • Schimmelmann, A., Boudou, J.-P., Lewan, M. D., and Wintsch, R. P., 2001. Experimental controls on D/H and 13C/12C ratios of kerogen, bitumen and oil during hydrous pyrolysis. Organic Geochemistry, 32, 1009–1018.

    Article  Google Scholar 

  • Schimmelmann, A., Lewan, M. D., and Wintsch, R. P., 1999. D/H isotope ratios of kerogen, bitumen, oil, and water in hydrous pyrolysis of source rocks containing kerogen types I, II, IIS, and III. Geochimica et Cosmochimica Acta, 63, 3751–3766.

    Article  Google Scholar 

  • Schimmelmann, A., Sessions, A. L., Boreham, C. J., Edwards, D. S., Logan, G. A., and Summons, R. E., 2004. D/H ratios in terrestrially sourced petroleum systems. Organic Geochemistry, 35, 1169–1195.

    Article  Google Scholar 

  • Schoell, M., 1980. The hydrogen and carbon isotopic composition of methane from natural gases of various origins. Geochimica et Cosmochimica Acta, 44, 649–662.

    Article  Google Scholar 

  • Schoell, M., Schouten, S., Sinninghe-Damsté, J. S., de Leeuw, J. W., and Summons, R. E., 1994. A molecular organic carbon isotope record of Miocene climate changes. Science, 263, 1122–1125.

    Article  Google Scholar 

  • Schouten, S., Klein Breteler, W. C. M., Blokker, P., Schogt, N., Rijpstra, W. I. C., Grice, K., Baas, M., and Sinninghe Damsté, J. S., 1998. Biosynthetic effects on the stable carbon isotopic compositions of algal lipids: implications for deciphering the carbon isotopic biomarker record. Geochimica et Cosmochimica Acta, 62, 1397–1406.

    Article  Google Scholar 

  • Schouten, S., Schoell, M., Rijpstra, W. I. C., Sinninghe Damsté, J. S., and de Leeuw, J. W., 1997. A molecular stable carbon isotope study of organic matter from the Miocene Monterey Formation (Pismo Basin). Geochimica et Cosmochimica Acta, 61, 2065–2082.

    Article  Google Scholar 

  • Schouten, S., Özdirekcan, S., van der Meer, M. T. J., Blokker, P., Baas, M., Hayes, J. M., and Sinninghe Damsté J. S., 2008. Evidence for substantial intramolecular heterogeneity in the stable carbon isotopic composition of phytol in photoautotrophic organisms. Organic Geochemistry, 39, 135–146.

    Article  Google Scholar 

  • Schwender, J., Seemann, M., Lichtenthaler, H. K., and Rohmer, M., 1996. Biosynthesis of isoprenoids (carotenoids, sterols, prenyl side-chains of chlorophylls and plastoquinone) via a novel pyruvate/glyceraldehyde 3-phosphate non-mevalonate pathway in the green algae Scenedesmus obliquus. Biochemical Journal, 316, 73–80.

    Google Scholar 

  • Sessions, A. L., 2006. Seasonal changes in D/H fractionation accompanying lipid biosynthesis in Spatina alterniflora. Geochimica et Cosmochimica Acta, 70, 2153–2162.

    Article  Google Scholar 

  • Sessions, A. L., Burgoyne, T. W., Schimmelmann, A., and Hayes, J. M., 1999. Fractionation of hydrogen isotopes in lipid biosynthesis. Organic Geochemistry, 30, 1193–1200.

    Article  Google Scholar 

  • Sessions, A. L., Sylva, S. P., Summons, R. E., and Hayes, J. M., 2004. Isotopic exchange of carbon-bound hydrogen over geologic timescales. Geochimica et Cosmochimica Acta, 68, 1545–1559.

    Article  Google Scholar 

  • Simoneit, B. R. T., 1997. Compound-specific carbon isotope analysis of individual long-chain alkanes and alkanoic acids in Harmatten aerosols. Atmospheric Environment, 31, 2225–2233.

    Article  Google Scholar 

  • Sinninghe Damsté, J. S., Baas, M., Geenevasen, J. A. J., and Kenig, F., 2005. Structural identification of sedimentary C21 and C22 highly branched isoprenoid alkanes. Organic Geochemistry, 36, 511–517.

    Article  Google Scholar 

  • Sinninghe Damsté, J. S., Kenig, F., Koopmans, M., Köster, J., Schouten, S., Hayes, J. M., and de Leeuw, J. W., 1995. Evidence for gammacerane as an indicator of water column stratification. Geochimica et Cosmochimica Acta, 59, 1895–1900.

    Article  Google Scholar 

  • Sinninghe Damsté, J. S., Rijpstra, W. I. C., Coolen, M. J. L., Schouten, S., and Volkman, J. K., 2007. Rapid sulfurisation of highly branched isoprenoid (HBI) alkenes in sulfidic Holocene sediments from Ellis Fjord, Antarctica. Organic Geochemistry, 38, 128–139.

    Article  Google Scholar 

  • Sinninghe Damsté, J. S., Rijpstra, W. I. C., Kock-Van Dalen, A. C., de Leeuw, J. W., and Schenk, P., 1989. Quenching of labile functionalised lipids by inorganic sulfur species. Evidence for the formation of sedimentary organic sulfur compounds at the early stage of diagenesis. Geochimica et Cosmochimica Acta, 58, 1343–1355.

    Article  Google Scholar 

  • Sinninghe Damsté, J. S., van Dongen, B. E., Rijpstra, W. I. C., Schouten, S., Volkman, J. K., and Geenevasen, J. A. J., 2001. Novel intact glycolipids in sediments from an Antarctic lake (Ace Lake). Organic Geochemistry, 32, 321–332.

    Article  Google Scholar 

  • Sinninghe Damsté, J. S., Wakeham, S. G., Kohnen, M. E. L., Hayes, J. M., and de Leeuw, J. W., 1993. A 6,000-year sedimentary molecular record of chemocline excursions in the Black Sea. Nature, 362, 827–829.

    Article  Google Scholar 

  • Sirevag, R., Buchanan, B. B., Berry, J. A., and Troughton, J. H., 1977. Mechanisms of CO2 fixation in bacterial photosynthesis studied by the carbon isotope fractionation technique. Archives of Microbiology, 112, 35–38.

    Article  Google Scholar 

  • Smith, B. N., and Epstein, S., 1970. Biogeochemistry of the stable isotopes of hydrogen and carbon in salt marsh biota. Plant Physiology, 46, 738–742.

    Article  Google Scholar 

  • Smith, F., and Freeman, K. H., 2006. Influence of physiology and climate on δD of leaf wax n-alkanes from C3 and C4 grasses. Geochimica et Cosmochimica Acta, 70, 1172–1187.

    Article  Google Scholar 

  • Smittenberg, R., and Sachs, J., 2007. Purification of dinosterol for hydrogen isotopic analysis using high-performance liquid chromatography–mass spectrometry. Journal of Chromatography A, 1169, 70–76.

    Article  Google Scholar 

  • Smith, F. A., Wing, S. L., and Freeman, K. H., 2007. Magnitude of the carbon isotope excursion at the Paleocene–Eocene thermal maximum: the role of plant community change. Earth and Planetary Science Letters, 262, 50–65.

    Article  Google Scholar 

  • Spooner, N., Rieley, G., Collister, J. W., Lander, M., Cranwell, P. A., and Maxwell, J. R., 1994. Stable carbon isotopic correlation of individual biolipids in aquatic organisms and a lake bottom sediment. Organic Geochemistry, 21, 823–827.

    Article  Google Scholar 

  • Summons, R. E., and Powell, T. G., 1986. Chlorobiaceae in Palaeozoic seas revealed by biological markers, isotopes and geology. Nature, 319, 763–765.

    Article  Google Scholar 

  • Summons, R. E., and Powell, T. G., 1987. Identification of aryl-isoprenoids in source rocks and crude oils: biological markers for the green sulfur bacteria. Geochimica Cosmochimica Acta, 51, 557–566.

    Article  Google Scholar 

  • Summons, R. E., Barrow, R. A., Capon, R. J., Hope, J. M., and Stranger, C., 1993. The structure of a new C25 isoprenoid alkane biomarker from diatomaceous microbial communities. Australian Journal of Chemistry, 46, 907–915.

    Article  Google Scholar 

  • Summons, R. E., Freeman, K. H., Grice, K., and Pancost, R., 2008. Where would we be without the isotopes? Organic Geochemistry, in press.

    Google Scholar 

  • Summons, R. E., Hope, J. M., Dowling, L. M., Jahnke, L. L., Largeau, C., and Metzger, P., 1996. Carbon isotope fractionation in lipid biosynthesis by algae and cyanobacteria. In Grimalt, J. O., and Dorronsoro, C. (eds.), Organic Geochemistry: DeveloPMInts and Applications to Energy, Climate, Environment and Human History. San Sebastian, Spain: A.I.G.O.A., pp. 6–7.

    Google Scholar 

  • Summons, R. E., Jahnke, L. L., Hope, J. M., and Logan, G. A., 1998. Geoplipids from cyanobacteria: New studies of old rocks and hot spring microbial mats from Yellowstone National Park. Australian Organic Geochemistry Conference, Canberra: September 28–30, pp. 10–11.

    Google Scholar 

  • Summons, R. E., Jahnke, L. L., and Roksandic, Z., 1994. Carbon isotopic fractionation in lipids from methanotrophic bacteria: relevance for interpretation of the geochemical record of biomarkers. Geochimica et Cosmochimica Acta, 58, 2853–2863.

    Article  Google Scholar 

  • Summons, R., Love, G. D., Hays, L., Cao, C., Jin, Y., Shen, S. Z., Grice, K., and Foster, C. B., 2006. Molecular evidence for prolonged photic zone euxinia at the Meishan and East Greenland sections of the Permian Triassic Boundary. 16th Annual V.M Goldschmidt Conference of 2006, Melbourne.

    Google Scholar 

  • Summons, R. E., Metzger, P., Largeau, C., Murray, A. P., and Hope, J. M., 2002. Polymethylsqualanes from Botryococcus braunii in lacustrine sediments and oils. Organic Geochemistry, 33, 99–109.

    Article  Google Scholar 

  • Thiel, V., Jenisch, A., Landmann, G., Reimer, A., and Michaelis, W., 1997. Unusual distributions of long-chain alkenones and tetrahymanol from the highly alkaline Lake Van, Turkey. Geochimica et Cosmochimica Acta, 61, 2053–2064.

    Article  Google Scholar 

  • Tolosa, I., and Ogrinc, N., 2007. Utility of 5 Å molecular sieves to measure carbon isotope ratios in lipid biomarkers. Journal of Chromatography A, 1165, 172–181.

    Article  Google Scholar 

  • Tuo, J., Zhang, M., Wang, X., and Zhang, C., 2006. Hydrogen isotope ratios of aliphatic and diterpenoid hydrocarbons in coals and carbonaceous mudstones from the Liaohe Basin, China. Organic Geochemistry, 37, 165–176.

    Article  Google Scholar 

  • Urey, H. C., Lowenstam, H. A., Epstein, S., and McKinney, C. R., 1951. Measurement of palaeotemperatures and temperatures of the upper Cretaceous of England, Denmark, and Southeastern United States. AAPGB, 62, 399–416.

    Article  Google Scholar 

  • van der Meer, M. T. J., Schouten, S., and Sinninghe Damsté, J. S., 1998. The effect of the reversed tricarboxylic acid cycle on the C-13 contents of bacterial lipids. Organic Geochemistry, 28, 527–533.

    Article  Google Scholar 

  • van Dongen, B. E., Schouten, S., and Sinninghe Damsté, J. S., 2001. Gas chromatography/combustion/isotope-ratio-monitoring mass spectrometric analysis of methylboronic derivatives of monosaccharides: a new method for determining natural 13C abundances of carbohydrates. Rapid Communications in Mass Spectrometry, 15, 496–500.

    Article  Google Scholar 

  • Vinke, A., Schouten, S., Sephton, S., and Sinninghe Damsté, J. S., 1998. A newly discovered norisoprenoid, 2,6,15,19-tetramethylicosane, in Cretaceous black shales. Geochimica et Cosmochimica Acta, 6, 965–970.

    Article  Google Scholar 

  • Volkman, J. K., Barrett, S. M., Blackburn, S. I., Mansour, M. P., Sikes, E. L., and Gelin, F., 1998. Microalgal biomarkers: a review of recent research develoPMInts. Organic Geochemistry, 29, 1163–1179.

    Article  Google Scholar 

  • Volkman, J. K., Eglinton, G., Corner, E. D. S., and Forsberg, T. E. V., 1980. Long chain alkenes and alkenones in the marine coccolithophorid Emiliania huxleyi. Phytochemistry, 19, 2619–2622.

    Article  Google Scholar 

  • Volkman, J. K., Barrett, S. M., and Dunstan, G. A., 1994. C25 and C30 highly branched isoprenoid alkanes in laboratory cultures of two marine diatoms. Organic Geochemistry, 21, 407–413.

    Article  Google Scholar 

  • Volkman, J. K., Barrett, S. M., Dunstan, G. A., and Jeffrey, S. W., 1992. Advances in the biomarkers chemistry of marine algae. In Third Conference on Petroleum Geochemistry and Exploration in the Afro-Asian Region, Abstracts, February 1992, Melbourne.

    Google Scholar 

  • Werne, J. P., Baas, M., and Sinninghe Damsté, J. S., 2002. Molecular isotopic tracing of carbon flow and trophic relationships in a methane-supported benthic microbial community. Limnology and Oceanography, 47, 1694–1701.

    Article  Google Scholar 

  • Werne, J. P., and Hollander, D. J., 2004. Balancing supply and demand: Controls on carbon isotope fractionation in the Cariaco Basin (Venezuela) Younger Dryas to Present. Marine Chemistry, 92, 1–4, 275–293.

    Article  Google Scholar 

  • Werner, R. A., and Brand, W. A., 2001. Referencing strategies and techniques in stable isotope ratio analysis. Rapid Communications in Mass Spectrometry, 15, 501–519.

    Article  Google Scholar 

  • West, N., Alexander, R., and Kagi, R. I., 1990. The use of silicalite for the rapid isolation of branched and cyclic alkane fractions of petroleum. Organic Geochemistry, 15, 499–501.

    Article  Google Scholar 

  • Whiticar, M. J., Faber, E., and Schoell, M., 1986. Biogenic methane formation in marine and freshwater environments: CO2 reduction vs. acetate fermentation-Isotope evidence. Geochimica et Cosmochimica Acta, 50, 693–709.

    Article  Google Scholar 

  • Wiesenberg, G. L. B., Schwarzbauer, J., Schmidt, M. W. I., and Schwark, L., 2004. Source and turnover of organic matter in agricultural soils derived from n-alkane/n-carboxylic acid compositions and C-isotope signatures. Organic Geochemistry, 35, 1371–1393.

    Google Scholar 

  • Woltemate, I., Whiticar, M. J., and Schoell, M., 1984. Carbon and hydrogen isotopic composition of bacterial methane in a shallow freshwater lake. Limnology and Oceanography, 29, 985–992.

    Article  Google Scholar 

  • Xie, S., Nott, C. J., Avsejs, L. A., Maddy, D., Chamberes, F. M., and Evershed, R. P., 2004. Molecular and isotopic stratigraphy in an ombrotrophic mire for paleoclimate reconstruction. Geochimica et Cosmochimica Acta, 68, 2849–2862.

    Article  Google Scholar 

  • Xie, S., Nott, C. J., Avsejs, L. A., Volders, F., Maddy, D., Chambers, F. M., Gledhill, A., Carter, J. F., and Evershed, R. P., 2000. Palaeoclimate records in compound-specific δD values of a lipid biomarker in ombrotrophic peat. Organic Geochemistry, 31, 1053–1057.

    Article  Google Scholar 

  • Xiong, Y., Geng, A., Pan, C., Liu, D., and Peng, P., 2005. Characterization of the hydrogen isotopic composition of individual n-alkanes in terrestrial source rocks. Applied Geochemistry, 20, 455–464.

    Article  Google Scholar 

  • Yang, H., and Huang, Y., 2003. Preservation of lipid hydrogen isotope ratios in Miocene lacustrine sediments and plant fossils at Clarkia northern Idaho, USA. Organic Geochemistry, 34, 413–423.

    Article  Google Scholar 

  • Zhang, Z., Metzger, P., and Sachs, J. P., 2007. Biomarker evidence for the co-occurrence of three races (A, B and L) of Botryococcus braunii in El Junco Lake, Galápagos. Organic Geochemistry, 38, 1459–1478.

    Article  Google Scholar 

  • Zhao, M., Dupont, L., Eglinton, G., and Teece, M., 2003. n-Alkane and pollen reconstruction of terrestrial climate and vegetation for N.W. Africa over the last 160 kyr. Organic Geochemistry, 34, 131–143.

    Article  Google Scholar 

  • Zhao, M., Eglinton, G., Haslett, S. K., Jordan, R. W., Sarnthein, M., and Zhang, Z., 2000. Marine and terrestrial biomarker records for the last 35,000 years at ODP site 658C off NW Africa. Organic Geochemistry, 31, 919–930.

    Article  Google Scholar 

  • Zhou, Y., Grice, K., Stuart-Williams, H., Farquhar, G. D., Hocart, C. H., Lu, H., and Liu, W., 2010. Biosynthetic origin of the saw-toothed profile in 13C and of n-alkanes and systematic isotopic differences between-, iso- & anteiso-alkanes in leaf waxes of land plants. Phytochemistry, 71, 388–403.

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2011 Springer Science+Business Media B.V.

About this entry

Cite this entry

Grice, K., Brocks, J.J. (2011). Biomarkers (Organic, Compound-Specific Isotopes). In: Reitner, J., Thiel, V. (eds) Encyclopedia of Geobiology. Encyclopedia of Earth Sciences Series. Springer, Dordrecht. https://doi.org/10.1007/978-1-4020-9212-1_29

Download citation

Publish with us

Policies and ethics