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The Genus Flavobacterium

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The Prokaryotes

Introduction

The genus Flavobacterium Bergey, Harrison, Breed, Hammer, and Huntoon 1923, emend. Bernardet, Segers, Vancanneyt, Berthe, Kersters, and Vandamme 1996 (Bergey et al., 1923; Bernardet et al., 1996) is probably one of the best examples of the revolution brought to the classification of a bacterial taxon by the use of the phylogenetic techniques based on the comparison of 16S rRNA sequences. Of the seven species considered in the previous edition of Bergey’s Manual of Systematic Bacteriology (Holmes et al., 1984), only the type species F. aquatile was finally retained while several other taxa, previously misclassified in other genera, were added to form an extensively emended genus Flavobacterium (Bernardet et al., 1996). Since then, the genus has considerably expanded owing to the description of many new species mostly originating from polar habitats. The organisms currently included in the genus Flavobacteriumwere distributed among different chapters in previous editions...

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Literature Cited

  • Aarthi, T. Leelapriya, P. T. Kalaichelvan, K. S. Dhilip, and P. V. S. Narayan. 2004 Application of weak sinusoidal magnetic field on Flavobacterium species in the treatment of paper mill effluent Electromag. Biol. Med. 23 215–227

    Article  CAS  Google Scholar 

  • Abdurashitov, M. A., S. S. Okhapkina, N. A. Netesova, L. N. Golikova, D. A. Gonchar, and S. K. Degtyarev. 2003 The unique FauI restriction-modification system: Cloning and protein sequence comparisons Molec. Biol. 37 524–528

    Article  CAS  Google Scholar 

  • Adachi, M., K. Fukami, R. Kondo, and T. Nishijima. 2002 Identification of marine algicidal Flavobacterium sp. 5N-3 using multiple probes and whole-cell hybridization Fish. Science 68 713–720

    Article  CAS  Google Scholar 

  • Agbo, J. A. C., and M. O. Moss. 1979 The isolation and characterization of agarolytic bacteria from a lowland river J. Gen. Microbiol. 115 355–368

    Article  Google Scholar 

  • Al-Harbi, A. H., and N. Uddin. 2003 Quantitative and qualitative studies on bacterial flora of hybrid tilapia (Oreochromis niloticus x O. aureus) cultured in earthen ponds in Saudi Arabia Aquacult. Res. 34 43–48

    Article  Google Scholar 

  • Alvarez, B., P. Secades, M. J. McBride, and J. A. Guijarro. 2004 Development of genetic techniques for the psychrophilic fish pathogen Flavobacterium psychrophilum Appl. Environ. Microbiol. 70 581–587

    Article  PubMed  CAS  Google Scholar 

  • Amin, N. E., I. S. Abdallah, M. Faisal, M. EL-S. Easa, T. Alaway, and S. A. Alyan. 1988 Columnaris infection among cultured Nile tilapia Oreochromis niloticus Ant. v. Leeuwenhoek 54 509–520

    Article  CAS  Google Scholar 

  • Amita, K., M. Hoshino, T. Honma, and H. Wakabayashi. 2000 An investigation on the distribution of Flavobacterium psychrophilum in the Umikawa River [in Japanese, with abstract, tables and figures in English] Fish Pathol. 35 193–197

    Article  Google Scholar 

  • Anacker, R. L., and E. J. Ordal. 1955 Study of a bacteriophage infecting the myxobacterium Chondrococcus columnaris J. Bacteriol. 70 738–741

    PubMed  CAS  Google Scholar 

  • Anacker, R. L., and E. J. Ordal. 1959 Studies on the myxobacterium Chondrococcus columnaris. II: Bacteriocins J. Bacteriol. 78 33–40

    PubMed  CAS  Google Scholar 

  • Anderson, R. L., and E. J. Ordal. 1961 Cytophaga succinicans sp.n., a facultatively anaerobic, aquatic myxobacterium J. Bacteriol. 81 130–138

    PubMed  CAS  Google Scholar 

  • Aslam, Z., W.-T. Im, M. K. Kim, and S.-T. Lee. 2005 Flavobacterium granuli sp. nov., isolated from granules used in a wastewater treatment plant Int. J. Syst. Evol. Microbiol. 55 747–751

    Article  PubMed  CAS  Google Scholar 

  • Austin, B., and D. A. Austin. 1999 Bacterial Fish Pathogens: Disease of Farmed and Wild Fish, 3rd (revised) ed Praxis Publishing Chichester, UK

    Google Scholar 

  • Bader, J. A., P. H. Klesius, and S. Vinitnantharat. 1997 Comparison of whole-cell antigens of pressure-and formalin-killed Flexibacter columnaris from channel catfish (Ictalurus punctatus) Am. J. Vet. Res. 58 985–988

    PubMed  CAS  Google Scholar 

  • Bader, J. A., C. A. Shoemaker, and P. H. Klesius. 2005 Production, characterization and evaluation of virulence of an adhesion defective mutant of Flavobacterium columnare produced by β-lactam selection Let. Appl. Microbiol. 40 123–127

    Article  CAS  Google Scholar 

  • Baliarda, A., D. Faure, and M. C. Urdaci. 2002 Development and application of a nested PCR to monitor brood stock salmonid ovarian fluid and spleen for detection of the fish pathogen Flavobacterium psychrophilum J. Appl. Microbiol. 92 510–516

    Article  PubMed  CAS  Google Scholar 

  • Barker, G. A., S. M. Smith, and N. R. Bromage. 1989 The bacterial flora of rainbow trout, Salmo gairdneri Richardson, and brown trout, Salmon trutta L., eggs and its relationship to developmental success J. Fish Dis. 12 281–293

    Article  Google Scholar 

  • Bauwens, M., and J. De Ley. 1981 Improvements in the taxonomy of Flavobacterium by DNA:rRNA hybridization In: H. Reichenbach and O. B. Weeks (Eds.) The Flavobacterium-Cytophaga Group Gesellschaft für Biotechnologische Forschung Weinheim, Germany 27–31

    Google Scholar 

  • Becker, C. D., and M. P. Fujihara. 1978 The Bacterial Pathogen Flexibacter columnaris and its Epizootiology among Columbia River Fish: A Review and Synthesis American Fisheries Society Washington, DC Monograph no. 2

    Google Scholar 

  • Bell, G. R., G. E. Hoskins, and W. Hodgkiss. 1971 Aspects of the characterization, identification, and ecology of the bacterial flora associated with the surface of stream-incubating Pacific salmon (Oncorhynchus) eggs J. Fish. Res. Board Canada 28 1511–1525

    Article  Google Scholar 

  • Bergey, D. H., F. C. Harrison, R. S. Breed, B. W. Hammer, and F. M. Huntoon. 1923 Bergey’s Manual of Determinative Bacteriology, 1st ed Williams & Wilkins Baltimore, MD

    Google Scholar 

  • Bernardet, J.-F., F. Baudin-Laurencin, and G. Tixerant. 1988 First identification of “Cytophaga psychrophila” in France Bull. Eur. Ass. Fish Pathol. 8 104–105

    Google Scholar 

  • Bernardet, J.-F. 1989a Etude phénotypique et génomique des bactéries appartenant aux genres Cytophaga et Flexibacter (ordre des Cytophagales) et comparaison avec le genre Flavobacterium; application à l’identification et à la taxonomie des espèces ichtyopathogènes [PhD thesis] Université Paris 7 Paris, France

    Google Scholar 

  • Bernardet, J.-F. 1989b “Flexibacter columnaris”: First description in France and comparison with bacterial strains from other origins Dis. Aquat. Org. 6 37–44

    Article  Google Scholar 

  • Bernardet, J.-F., and P. A. D. Grimont. 1989 Deoxyribonucleic acid relatedness and phenotypic characterization of Flexibacter columnaris sp. nov., nom. rev., Flexibacter psychrophilus sp. nov., nom. rev., and Flexibacter maritimus Wakabayashi, Hikida, and Masumura 1986 Int. J. Syst. Bacteriol. 39 346–354

    Article  CAS  Google Scholar 

  • Bernardet, J.-F., and B. Kerouault. 1989 Phenotypic and genomic studies of “Cytophaga psychrophila” isolated from diseased rainbow trout (Oncorhynchus mykiss) in France Appl. Environ. Microbiol. 55 1796–1800

    PubMed  CAS  Google Scholar 

  • Bernardet, J.-F., P. Segers, M. Vancanneyt, F. Berthe, K. Kersters, and P. Vandamme. 1996 Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978) Int. J. Syst. Bacteriol. 46 128–148

    Article  Google Scholar 

  • Bernardet, J.-F. 1997 Immunization with bacterial antigens: Flavobacterium and Flexibacter infections Devel. Biol. Stand. 90 179–188

    CAS  Google Scholar 

  • Bernardet, J.-F. 1998 Cytophaga, Flavobacterium, Flexibacter and Chryseobacterium infections in cultured marine fish Fish Pathol. 33 229–238

    Article  Google Scholar 

  • Bernardet, J.-F., Y. Nakagawa, and B. Holmes. 2002 Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family Int. J. Syst. Evol. Microbiol. 52 1049–1070

    Article  PubMed  CAS  Google Scholar 

  • Bertolini, J. M., and J. S. Rohovec. 1992 Electrophoretic detection of proteases from different Flexibacter columnaris strains and assessment of their variability Dis. Aquat. Org. 12 121–128

    Article  CAS  Google Scholar 

  • Bertolini, J. M., H. Wakabayashi, V. G. Watral, M. J. Whipple, and J. S. Rohovec. 1994 Electrophoretic detection of proteases from selected strains of Flexibacter psychrophilus and assessment of their variability J. Aquat. Anim. Health 6 224–233

    Article  Google Scholar 

  • Bodour, A. A., K. P. Drees, and R. M. Maier. 2003 Distribution of biosurfactant-producing bacteria in undisturbed and contaminated arid southwestern soils Appl. Environ. Microbiol. 69 3280–3287

    Article  PubMed  CAS  Google Scholar 

  • Bodour, A. A., C. Guerrero-Barajas, B. V. Jiorle, M. E. Malcomson, A. K. Paull, A. Somogyi, L. N. Trinh, R. B. Bates, and R. M. Maier. 2004 Structure and characterization of flavolipids, a novel class of biosurfactants produced by Flavobacterium sp. strain MTN11 Appl. Environ. Microbiol. 70 114–120

    Article  PubMed  CAS  Google Scholar 

  • Borg, A. F. 1948 Studies on Myxobacteria Associated with Diseases in Salmonid Fishes [Ph D thesis] University of Washington Seattle, WA

    Google Scholar 

  • Borg, A. F. 1960 Studies on Myxobacteria Associated with Diseases in Salmonid Fishes American Association for the Advancement of Science Washington, DC Wildlife Disease, no. 8.

    Google Scholar 

  • Borriss, M., E. Helmke, R. Hanschke, and T. Schweder. 2003 Isolation and characterization of marine psychrophilic phage-host systems from Arctic sea ice Extremophiles 7 377–384

    Article  PubMed  CAS  Google Scholar 

  • Bowman, J. P., S. A. McCammon, M. V. Brown, D. S. Nichols, and T. A. McMeekin. 1997 Diversity and association of psychrophilic bacteria in Antarctic sea ice Appl. Environ. Microbiol. 63 3068–3078

    PubMed  CAS  Google Scholar 

  • Bowman, J. P., S. A. McCammon, T. Lewis, J. H. Skerratt, J. L. Brown, D. S. Nichols, and T. A. McMeekin. 1998 Psychroflexus torquis gen. nov., sp. nov., a psychrophilic species from Antarctic sea ice, and reclassification of Flavobacterium gondwanense (Dobson et al. 1993) as Psychroflexus gondwanense gen. nov., comb. nov Microbiology 144 1601–1609

    Article  PubMed  CAS  Google Scholar 

  • Bowman, J. P., and B. Nowak. 2004 Salmonid gill bacteria and their relationship to amoebic gill disease J. Fish Dis. 27 483–492

    Article  PubMed  CAS  Google Scholar 

  • Brinkmeyer, R., K. Knittel, J. Jürgens, H. Weyland, R. Amann, and E. Helmke. 2003 Diversity and structure of bacterial communities in Arctic versus Antarctic pack ice Appl. Environ. Microbiol. 69 6610–6619

    Article  PubMed  CAS  Google Scholar 

  • Brisou, J., C. Tysset, A. Jacob, and L. Valette. 1960 Contribution à l’étude de deux germes du genre Flavobacterium saprophytes d’anguille d’eau douce (Anguilla vulgaris Turton) Arch. Inst. Pasteur Algérie 38 500–509

    Google Scholar 

  • Brown, L. L., W. T. Cox, and R. P. Levine. 1997 Evidence that the causal agent of bacterial cold-water disease Flavobacterium psychrophilum is transmitted within salmonid eggs Dis. Aquat. Org. 29 213–218

    Article  Google Scholar 

  • Bruun, M. S., A. S. Schmidt, L. Madsen, and I. Dalsgaard. 2000 Antimicrobial resistance patterns in Danish isolates of Flavobacterium psychrophilum Aquaculture 187 201–212

    Article  CAS  Google Scholar 

  • Bruun, M. S., L. Madsen, and I. Dalsgaard. 2003 Efficiency of oxytetracycline treatment in rainbow trout experimentally infected with Flavobacterium psychrophilum strains having different in vitro antibiotic susceptibilities Aquaculture 215 11–20

    Article  CAS  Google Scholar 

  • Bullock, G. L., D. A. Conroy, and S. F. Snieszko. 1971 Bacterial diseases of fish: Myxobacterioses In: S. F. Snieszko and H. R. Axelrod (Eds.) Diseases of Fish TFH Publication Jersey City, NJ 60–87

    Google Scholar 

  • Bullock, G. L. 1972 Studies on Selected Myxobacteria Pathogenic for Fishes and on Bacterial Gill Disease in Hatchery-reared Salmonids U.S. Bureau of Sport Fisheries and Wildlife Technical Papers 60.

    Google Scholar 

  • Bullock, G. L., T. C. Hsu, and E. B. Shotts. 1986 Columnaris Disease of Fishes US Department of the Interior, Fish and Wildlife Service, Division of Fisheries and Wetlands Research Washington, DCFish Disease Leaflet no. 72.

    Google Scholar 

  • Burchard, R. P. 1981 Gliding motility of prokaryotes: ultrastructure, physiology, and genetics Ann. Rev. Microbiol. 35 497–529

    Article  CAS  Google Scholar 

  • Busch, S., I. Dalsgaard, and K. Buchmann. 2003 Concomitant exposure of rainbow trout fry to Gyrodactylus derjavini and Flavobacterium psychrophilum: Effects on infection and mortality of host Veterinary Parasitology 117 117–122

    Article  PubMed  CAS  Google Scholar 

  • Callies, E., and W. Mannheim. 1978 Classification of the Flavobacterium-Cytophaga complex on the basis of respiratory quinones and fumarate respiration Int. J. Syst. Bacteriol. 28 14–19

    Article  CAS  Google Scholar 

  • Campbell, C. L., D. L. Mummey, E. T. Schmidtmann, and W. C. Wilson. 2004 Culture-independent analysis of midgut microbiota in the arbovirus vector Culicoides sonorensis (Diptera: Ceratopogonidae) J. Med. Entomol. 41 340–348

    Article  PubMed  Google Scholar 

  • Carson, J., L. M. Schmidtke, and B. L. Munday. 1993 Cytophaga johnsonae: a putative skin pathogen of juvenile farmed barramundi, Lates calcarifer Bloch J. Fish Dis. 16 209–218

    Article  Google Scholar 

  • Chakroun, C., M. C. Urdaci, D. Faure, F. Grimont, and J.-F. Bernardet. 1997 Random Amplified Polymorphic DNA analysis provides rapid differentiation among isolates of the fish pathogen Flavobacterium psychrophilum and among Flavobacterium species Dis. Aquat. Org. 31 187–196

    Article  CAS  Google Scholar 

  • Chakroun, C., F. Grimont, M. C. Urdaci, and J.-F. Bernardet. 1998 Fingerprinting of Flavobacterium psychrophilum isolates by ribotyping and plasmid profiling Dis. Aquat. Org. 33 167–177

    Article  PubMed  CAS  Google Scholar 

  • Chase, J. M. 1965 In: Nutrition of Some Aquatic Myxobacteria [MSc thesis] University of Washington Washington, DC

    Google Scholar 

  • Chester, F. D.. 1897 Report of the mycologist: bacteriological work Del. Agric. Exp. Sta. Bull. 9 38–145

    Google Scholar 

  • Chowdhury, M. B. R., and H. Wakabayashi. 1988 Effects of sodium, potassium, calcium and magnesium ions on the survival of Flexibacter columnaris in water Fish Pathol. 23 231–235

    Article  CAS  Google Scholar 

  • Chowdhury, M. B. R., and H. Wakabayashi. 1989 Effects of competitive bacteria on the survival and infectivity of Flexibacter columnaris Fish Pathol. 24 9–15

    Article  Google Scholar 

  • Chowdhury, M. B. R. 1995 Study on the virulence of Flexibacter columnaris strains In: M. Shariff, J. R. Arthur, and R. P. Subasinghe (Eds.) Diseases in Asian Aquaculture Asian Fisheries Society, Fish Health Section Quezon City, The Phillipines II 269–274

    Google Scholar 

  • Christensen, P. J. 1974 A microbiological study of some lake waters and sediments from the Mackenzie Valley with special reference to cytophagas Arctic 27 309–312

    Google Scholar 

  • Christensen, P. J. 1977 The history, biology, and taxonomy of the Cytophaga group Can. J. Microbiol. 23 1599–1653

    Article  PubMed  CAS  Google Scholar 

  • Cipriano, R. C., and J. D. Teska. 1994 Effects of medium composition on the growth of two fish pathogens, Cytophaga columnaris and Cytophaga psychrophila Biomed. Lett. 49 7–12

    Google Scholar 

  • Cipriano, R. C., L. A. Ford, and J. D. Teska. 1995 Association of Cytophaga psychrophila with mortality among eyed eggs of Atlantic salmon (Salmo salar) J. Wildl. Dis. 31 166–171

    PubMed  CAS  Google Scholar 

  • Cipriano, R. C., W. B. Schill, J. D. Teska, and L. A. Ford. 1996 Epizootiological study of bacterial cold-water disease in Pacific salmon and further characterization of the etiologic agent, Flexibacter psychrophila J. Aquat. Anim. Health 8 28–36

    Article  Google Scholar 

  • Cone, D. K., J. D. Miller, and W. K. Austin. 1980 The pathology of “saddleback” disease of underyearling Atlantic salmon (Salmo salar) Can. J. Zool. 58 1283–1287

    Article  Google Scholar 

  • Cousin, M. A. 1982 Presence and activity of psychrotrophic microorganisms in milk and dairy products: A review J. Food Protect. 45 172–207

    Google Scholar 

  • Crump, B. C., E. V. Armbrust, and J. A. Baross. 1999 Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia River, its estuary, and the adjacent coastal ocean Appl. Environ. Microbiol. 65 3192–3204

    PubMed  CAS  Google Scholar 

  • Crump, E. M., M. B. Perry, S. C. Clouthier, and W. W. Kay. 2001 Antigenic characterization of the fish pathogen Flavobacterium psychrophilum Appl. Environ. Microbiol. 67 750–759

    Article  PubMed  CAS  Google Scholar 

  • Dalsgaard, I. 1993 Virulence mechanisms in Cytophaga psychrophila and other Cytophaga-like bacteria pathogenic for fish Ann. Rev. Fish Dis. 1993 127–144

    Article  Google Scholar 

  • Dalsgaard, I., and L. Madsen. 2000 Bacterial pathogens in rainbow trout, Oncorhynchus mykiss (Walbaum), reared at Danish freswater farms J. Fish Dis. 23 199–209

    Article  Google Scholar 

  • Darwish, A. M., A. A. Ismaiel, J. C. Newton, and J. Tang. 2004 Identification of Flavobacterium columnare by a species-specific polymerase chain reaction and renaming of ATCC 43622 strain to Flavobacterium johnsoniae Mol. Cell. Probes 18 421–427

    Article  PubMed  CAS  Google Scholar 

  • Daskalov, H., D. A. Austin, and B. Austin. 1999 An improved growth medium for Flavobacterium psychrophilum Lett. Appl. Microbiol. 28 297–299

    Article  PubMed  CAS  Google Scholar 

  • Davidson, M. L.. 1996 Characterization of the Outer Membrane Proteins of Flavobacterium columnare and Examination of their Antigenicity to Channel Catfish Ictalurus punctatus [MSc thesis] Auburn University Auburn, AL

    Google Scholar 

  • Davis, H. S. 1922 A new bacterial disease of fresh-water fishes Bull. US Bur. Fish. 38 261–280

    Google Scholar 

  • Davis, H. S. 1946 Care and Diseases of Trout US Government Printing Office Washington, DCUS Department of Interior Research Report no. 12.

    Google Scholar 

  • Decostere, A., F. Haesebrouck,and L. A. Devriese. 1997 Shieh medium supplemented with tobramycin for selective isolation of Flavobacterium columnare (Flexibacter columnaris) from diseased fish J. Clin. Microbiol. 35 322–324

    PubMed  CAS  Google Scholar 

  • Decostere, A., F. Haesebrouck, and L. A. Devriese. 1998 Characterization of four Flavobacterium columnare (Flexibacter columnaris) strains isolated from tropical fish Vet. Microbiol. 62 35–45

    Article  PubMed  CAS  Google Scholar 

  • Decostere, A., F. Haesebrouck, G. Charlier, and R. Ducatelle. 1999 The association of Flavobacterium columnare strains of high and low virulence with gill tissue of black mollies (Poecilia sphenops) Vet. Microbiol. 67 287–298

    Article  PubMed  CAS  Google Scholar 

  • Decostere, A., F. Haesebrouck, J. F. Turnbull, and G. Charlier. 1999 Influence of water quality and temperature on adhesion of high and low virulence Flavobacterium columnare strains to isolated gill arches J. Fish Dis. 22 1–11

    Article  Google Scholar 

  • Decostere, A., F. Haesebrouck, E. Van Driessche, G. Charlier, and R. Ducatelle. 1999 Characterization of the adhesion of Flavobacterium columnare (Flexibacter columnaris) to gill tissue J. Fish Dis. 22 465–474

    Article  Google Scholar 

  • Decostere, A., E. D’Haese, M. Lammens, H. Nelis, and F. Haesebrouck. 2001 In vivo study of phagocytosis, intracellular survival and multiplication of Flavobacterium psychrophilum in rainbow trout, Oncorhynchus mykiss (Walbaum), spleen phagocytes J. Fish Dis. 24 481–487

    Article  Google Scholar 

  • Decostere, A., R. Ducatelle, and F. Haesebrouck. 2002 Flavobacterium columnare (Flexibacter columnaris) associated with severe gill necrosis in koi carp (Cyprinus carpio L.) Vet. Rec. 150 694–695

    Article  PubMed  CAS  Google Scholar 

  • del Cerro, A., M. C. Mendoza, and J. A. Guijarro. 2002 Usefulness of a TaqMan-based polymerase chain reaction assay for the detection of the fish pathogen Flavobacterium psychrophilum J. Appl. Microbiol. 92 1–8

    Article  Google Scholar 

  • del Cerro, A., I. Marquez, and J. A. Guijarro. 2002 Simultaneous detection of Aeromonas salmonicida, Flavobacterium psychrophilum, and Yersinia ruckeri, three major fish pathogens, by multiplex PCR Appl. Environ. Microbiol. 68 5177–5180

    Article  PubMed  CAS  Google Scholar 

  • Derksen, J. A., V. E. Ostland, and H. W. Ferguson. 1999 Effects of hydrogen peroxide on clearance of formalin-killed Flavobacterium branchiophilum from the gills of rainbow trout, Oncorhynchus mykiss (Walbaum) J. Fish Dis. 22 59–67

    Article  CAS  Google Scholar 

  • Desolme, B., and J.-F. Bernardet. 1996 Freeze-drying of Flavobacterium columnare, Flavobacterium psychrophilum and Flexibacter maritimus Dis. Aquat. Org. 27 77–80

    Article  Google Scholar 

  • Dorey, M. J. 1959 Some properties of a pectinolytic soil Flavobacterium J. Gen. Microbiol. 20 91–104

    Article  PubMed  CAS  Google Scholar 

  • Ekman, E., H. Börjeson, and N. Johansson. 1999 Flavobacterium psychrophilum in Baltic salmon Salmo salar brood fish and their offspring Dis. Aquat. Org. 37 159–163

    Article  PubMed  CAS  Google Scholar 

  • Ekman, E., and L. Norrgren. 2003 Pathology and immunohistochemistry in three species of salmonids after experimental infection with Flavobacterium psychrophilum J. Fish Dis. 26 529–538

    Article  PubMed  CAS  Google Scholar 

  • Ekman, E., G. Åkerman, L. Balk, and L. Norrgren. 2003 Nanoinjection as a tool to mimic vertical transmission of Flavobacterium psychrophilum in rainbow trout Oncorhynchus mykiss Dis. Aquat. Org. 55 93–99

    Article  PubMed  Google Scholar 

  • Ellerbroek, L. 1997 Airborne microflora in poultry slaughtering establishments Food Microbiol. 14 527–531

    Article  Google Scholar 

  • Elotmani, F., O. Assobhei, A. M. Revol-Junelles, and J. B. Milliere. 2004 Microflora of fresh and ice-stored sardines (Sardina pilchardus) from the Moroccan Atlantic coast Ciencias Marinas 30 627–635

    Google Scholar 

  • Engelbrecht, K., P. J. Jooste, and B. A. Prior. 1996 Spoilage characteristics of Gram-negative genera and species isolated from Cape marine fish S. Afr. J. Food Sci. Nutr. 8 66–71

    Google Scholar 

  • Escalante, A., M. E. Rodrigez, A. Martinez, A. Lopez-Munguia, F. Bolivar, and G. Gosset. 2004 Characterization of bacterial diversity in Pulque, a traditional Mexican alcoholic beverage, as determined by 16S rDNA analysis FEMS Microbiol. Let. 235 273–279

    Article  CAS  Google Scholar 

  • Euzéby, J. P. 1997 List of Bacterial Names with Standing in Nomenclature: A folder available on the Internet Int. J. Syst. Bacteriol. 47 590–592

    Article  PubMed  Google Scholar 

  • Evensen, Ø., and E. Lorenzen. 1996 An immunohistochemical study of Flexibacter psychrophilus infection in experimentally and naturally infected rainbow trout (Oncorhynchus mykiss) fry Dis. Aquat. Org. 25 53–61

    Article  Google Scholar 

  • Farkas, J. 1985 Filamentous Flavobacterium sp. isolated from fish with gill diseases in cold water Aquaculture 44 1–10

    Article  Google Scholar 

  • Faruk, M. A. R. 2000 Characterization of Flavobacterium psychrophilum, the Causative Agent of Rainbow Trout Fry Syndrome [PhD thesis] University of Stirling Stirling, UK

    Google Scholar 

  • Faung, S.-T., L. Chiu, and C.-T. Wang. 1996 Platelet lysis and functional perturbation by 13-methyl myristate, the major fatty acid in Flavobacterium ranacida Thrombosis Res. 81 91–100

    Article  CAS  Google Scholar 

  • Ferguson, H. W., V. E. Ostland, P. Byrne, and J. S. Lumsden. 1991 Experimental production of bacterial gill disease in trout by horizontal transmission and by bath challenge J. Aquat. Anim. Hlth. 3 118–123

    Article  Google Scholar 

  • Fijan, N. N. 1969 Antibiotic additives for the isolation of Chondrococcus columnaris from fish Appl. Microbiol. 17 333–334

    PubMed  CAS  Google Scholar 

  • Fijan, N. N., and P. R. Voorhees. 1969 Drug sensitivity of Chondrococcus columnaris Vet. Arhiv, Zagreb 39 259–267

    CAS  Google Scholar 

  • Flaherty, D. K., F. H. Deck, M. A. Hood, C. Liebert, F. Singleton, P. Winzenburger, K. Bishop, L. R. Smith, L. M. Bynum, and W. B. Witmer. 1984 A Cytophaga species endotoxin as a putative agent of occupation-related lung disease Infect. Immun. 43 213–216

    PubMed  CAS  Google Scholar 

  • Frankland, G. C., and P. F. Frankland. 1889 Über einige typische Mikroorganismen im Wasser und im Boden Z. Hyg. 6 373–400

    Google Scholar 

  • Fujihara, M. P., and R. E. Nakatani. 1971 Antibody production and immune responses of rainbow trout and coho salmon to Chondrococcus columnaris J. Fish. Res. Board Can. 28 1253–1258

    Article  Google Scholar 

  • Garcia, C., F. Pozet, and C. Michel. 2000 Standardization of experimental infection with Flavobacterium psychrophilum, the agent of rainbow trout Oncorhynchus mykiss fry syndrome Dis. Aquat. Org. 42 191–197

    Article  PubMed  CAS  Google Scholar 

  • Garnjobst, L. 1945 Cytophaga columnaris (Davis) in pure culture: A myxobacterium pathogenic to fish J. Bacteriol. 49 113–128

    PubMed  CAS  Google Scholar 

  • Garrity, G. M., and J. G. Holt. 2001 The road map to the manual: Taxonomic outlines of the Archaea and Bacteria In: D. R. Boone and R. W. Castenholz (Eds.) Bergey’s Manual of Systematic Bacteriology, 2nd ed Springer-Verlag New York, NY 1

    Google Scholar 

  • Gennari, M., and C. Cozzolino. 1989 Observations on Flavobacterium, Cytophagaceae and other pigmented bacteria isolated from fresh and ice stored sardines Arch. Vet. Ital. 40 372–384

    Google Scholar 

  • Geornaras, I., A. E. de Jesus, E. van Zyl, and A. von Holy. 1996 Bacterial populations associated with poultry processing in a South African abattoir Food Microbiol. 13 457–465

    Article  Google Scholar 

  • Gherna, R., and C. R. Woese. 1992 A partial phylogenetic analysis of the “Flavobacter-Bacteroides” phylum: Basis for taxonomic restructuring System. Appl. Microbiol. 15 513–521

    Article  CAS  Google Scholar 

  • González, C. J., J. A. Santos, M.-L. García-López, and A. Otero. 2000 Psychrobacters and related bacteria in freshwater fish J. Food Protect. 63 315–321

    Google Scholar 

  • Griffin, B. R. 1991 Characteristics of a chondroitin AC lyase produced by Cytophaga columnaris Trans. Am. Fish. Soc. 120 391–395

    Article  CAS  Google Scholar 

  • Griffin, B. R. 1992 As simple procedure for identification of Cytophaga columnaris J. Aquat. Anim. Health 4 63–66

    Article  Google Scholar 

  • Gunasinghe, R. N., C. J. Ikiriwatte, and A. M. Karunaratne. 2004 The use of Pantoea agglomerans and Flavobacterium sp. to control banana pathogens J. Horticult. Sci. Biotechnol. 79 1002–1006

    Google Scholar 

  • Hamana, K., and S. Matsuzaki. 1990 Occurrence of homospermidine as a major polyamine in the authentic genus Flavobacterium Can. J. Microbiol. 36 228–231

    Article  CAS  Google Scholar 

  • Hamana, K., and S. Matsuzaki. 1991 Polyamine distribution in the Flavobacterium-Cytophaga-Sphingobacterium complex Can. J. Microbiol. 37 885–888

    Article  PubMed  CAS  Google Scholar 

  • Hamana, K., Y. Nakagawa, and K. Yamasato. 1995 Chemotaxonomic significance of polyamine distribution patterns in the Flavobacterium-Cytophaga complex and related genera Microbios 81 135–145

    CAS  Google Scholar 

  • Hamana, K., and Y. Nakagawa. 2001 Polyamine distribution profiles in newly validated genera and species within the Flavobacterium-Flexibacter-Cytophaga-Sphingobacterium complex Microbios 106 (S2) 105–116

    Google Scholar 

  • Hawke, J. P., and R. L. Thune. 1992 Systemic isolation and antimicrobial susceptibility of Cytophaga columnaris from commercially reared channel catfish J. Aquat. Anim. Health 4 109–113

    Article  Google Scholar 

  • Heo, G.-J., K. Kasai, and H. Wakabayashi. 1990 Occurrence of Flavobacterium branchiophila associated with bacterial gill disease at a trout hatchery Fish Pathol. 25 99–105

    Article  Google Scholar 

  • Heo, G.-J., H. Wakabayashi, and S. Watabe. 1990 Purification and characterization of pili from Flavobacterium branchiophila Fish Pathol. 25 21–27

    Article  Google Scholar 

  • Holmes, B., R. J. Owen, and T. A. McMeekin. 1984 Genus Flavobacterium Bergey, Harrison, Breed, Hammer and Huntoon 1923, 97AL In: N. R. Krieg and J. G. Holt (Eds.) Bergey’s Manual of Systematic Bacteriology Williams & Wilkins Baltimore MD 1 353–361

    Google Scholar 

  • Holmes, B. 1992 The Genera Flavobacterium, Sphingobacterium, and Weeksella In: A. Balows, H. G. Truper, M. Dworkin, W. Harder, and K.-H. Schleifer (Eds.) The Prokaryotes, 2nd ed Springer-Verlag New York, NY 3620–3630

    Google Scholar 

  • Holt, R. A. 1988 Cytophaga psychrophila, the Causative Agent of Bacterial Cold-water Disease in Salmonid Fish [PhD thesis] Oregon State University Corvallis, OR

    Google Scholar 

  • Holt, R. A., A. Amandi, J. S. Rohovec, and J. L. Fryer. 1989 Relation of water temperature to bacterial cold-water disease in coho salmon, chinook salmon, and rainbow trout J. Aquat. Anim. Health 1 94–101

    Article  Google Scholar 

  • Holt, R. A., J. S. Rohovec, and J. L. Fryer. 1993 Bacterial cold-water disease In: V. Inglis, R. J. Roberts, and N. R. Bromage (Eds.) Bacterial Diseases of Fish Blackwell Scientific Publications Oxford, UK 3–22

    Google Scholar 

  • Horn, M., M. D. Harzenetter, T. Linner, E. N. Schmid, K.-D. Müller, R. Michel, and M. Wagner. 2001 Member of Cytophaga-Flavobacterium-Bacteroides phylum as intracellular bacteria of acanthamoebae: Proposal of “Candidatus Amoebophilus asiaticus.” Environ. Microbiol. 3 440–449

    Article  PubMed  CAS  Google Scholar 

  • Huh, G.-J., and H. Wakabayashi. 1989 Serological characteristics of Flavobacterium branchiophila isolated from gill diseases of freshwater fishes in Japan, USA, and Hungary J. Aquat. Anim. Health 1 142–147

    Article  Google Scholar 

  • Humphry, D. R., A. George, G. W. Black, and S. P. Cummings. 2001 Flavobacterium frigidarium sp. nov., an aerobic, psychrophilic, xylanolytic and laminarinolytic bacterium from Antarctica Int. J. Syst. Evol. Microbiol. 51 1235–1243

    PubMed  CAS  Google Scholar 

  • Hunnicutt, D. W., and M. J. McBride. 2001 Cloning and characterization of the Flavobacterium johnsoniae gliding motility genes gldD and gldE J. Bacteriol. 183 4167–4175

    Article  PubMed  CAS  Google Scholar 

  • Hunnicutt, D. W., M. J. Kempf, and M. J. McBride. 2002 Mutations in Flavobacterium johnsoniae gldF and gldG disrupt gliding motility and interfere with membrane localization of gldA J. Bacteriol. 184 2370–2378

    Article  PubMed  CAS  Google Scholar 

  • Iida, Y., and A. Mizokami. 1996 Outbreaks of coldwater disease in wild ayu and pale chub Fish Pathol. 31 157–164

    Article  Google Scholar 

  • Inoue, K., and K. Komagata. 1976 Taxonomic study on obligately psychrophilic bacteria isolated from Antarctica J. Gen. Appl. Microbiol. 22 165–176

    Article  Google Scholar 

  • Izumi, S., and H. Wakabayashi. 1997 Use of PCR to detect Cytophaga psychrophila from apparently healthy juvenile ayu and coho salmon eggs Fish Pathol. 32 169–173

    Article  CAS  Google Scholar 

  • Izumi, S., and H. Wakabayashi. 1999 Further study on serotyping of Flavobacterium psychrophilum Fish Pathol. 34 89–90

    Article  Google Scholar 

  • Izumi, S., and H. Wakabayashi. 2000 Sequencing of gyrB and their application in the identification of Flauobacterium psychrophilum by PCR Fish Pathol. 35 93–94

    Article  CAS  Google Scholar 

  • Izumi, S., F. Aranishi, and H. Wakabayashi. 2003a A novel serotype of Flavobacterium psychrophilum detected using antiserum against an isolate from amago, Oncorhynchus masou rhodurus Jordan & Gilbert, in Japan J. Fish Dis. 26 677–680

    Article  PubMed  CAS  Google Scholar 

  • Izumi, S., F. Aranishi, and H. Wakabayashi. 2003b Genotyping of Flavobacterium psychrophilum using PCR-RFLP analysis Dis. Aquat. Org. 56 207–214

    Article  PubMed  CAS  Google Scholar 

  • Izumi, S., and F. Aranishi. 2004b Relationship between gyrA mutations and quinolone resistance in Flavobacterium psychrophilum isolates Appl. Environ. Microbiol. 70 3968–3972

    Article  PubMed  CAS  Google Scholar 

  • Jaspers, E., K. Nauhaus, H. Cypionka, and J. Overmann. 2001 Multitude and temporal variability of ecological niches as indicated by the diversity of cultivated bacterioplankton FEMS Microbiol. Ecol. 36 153–164

    Article  PubMed  CAS  Google Scholar 

  • Johnson, J. L., and W. S. Chilton. 1966 Galactosamine glycan of Chondrococcus columnaris Science 152 1247–1248

    Article  PubMed  CAS  Google Scholar 

  • Jooste, P. J., and C. J. Hugo. 1999 The taxonomy, ecology and cultivation of bacterial genera belonging to the family Flavobacteriaceae Int. J. Food Microbiol. 53 81–94

    Article  PubMed  CAS  Google Scholar 

  • Kaiser, P. 1961 Etude de l’activité pectinolytique du sol et d’autres substrats naturels [thesis] Université de Paris Paris, France

    Google Scholar 

  • Kaplan, C. W., and C. L. Kitts. 2004 Bacterial succession in a petroleum land treatment unit Appl. Environ. Microbiol. 70 1777–1786

    Article  PubMed  CAS  Google Scholar 

  • Kempf, M. J., and M. J. McBride. 2000 Transposon insertions in the Flavobacterium johnsoniae ftsX gene disrupt gliding motility and cell division J. Bacteriol. 182 1671–1679

    Article  PubMed  CAS  Google Scholar 

  • Kent, M. L., J. M. Groff, J. K. Morrison, W. T. Yasutake, and R. A. Holt. 1989 Spiral swimming behavior due to cranial and vertabral lesions associated with Cytophaga psychrophila infections in salmonid fishes Dis. Aquat. Org. 6 11–16

    Article  Google Scholar 

  • Kimura, N., H. Wakabayashi, and S. Kudo. 1978 Studies on bacterial gill disease in salmonids. I: Selection of bacterium transmitting gill disease [in Japanese with English abstract] Fish Pathol. 12 233–242

    Article  Google Scholar 

  • Kirchman, D. L., L. Y. Yu, and M. T. Cottrell. 2003 Diversity and abundance of uncultured Cytophaga-like bacteria in the Delaware estuary Appl. Environ. Microbiol. 69 6587–6596

    Article  PubMed  CAS  Google Scholar 

  • Kisand, V., and J. Wikner. 2003 Limited resolution of 16S rDNA DGGE caused by melting properties and closely related DNA sequences J. Microbiol. Meth. 54 183–191

    Article  CAS  Google Scholar 

  • Ko, Y.-M., and G.-J. Heo. 1997 Characteristics of Flavobacterium branchiophilum isolated from rainbow trout in Korea Fish Pathol. 32 97–102

    Article  Google Scholar 

  • Kondo, M., K. Kawai, K. Kurohara, and S. Oshima. 2002 Adherence of Flavobacterium psychrophilum on the body surface of the ayu Plecoglossus altivelis Microbes and Infection 4 279–283

    Article  PubMed  Google Scholar 

  • Kondo, M., K. Kawai, M. Okabe, N. Nakano, and S. Oshima. 2003 Efficacy of oral vaccine against bacterial coldwater disease in ayu Plecoglossus altivelis Dis. Aquat. Org. 55 261–264

    Article  PubMed  Google Scholar 

  • Koski, P., V. Hirvelä-Koski, and J.-F. Bernardet. 1993 Flexibacter columnaris infection in Arctic char (Salvelinus alpinus L.): First isolation in Finland Bull. Eur. Ass. Fish Pathol. 13 66–69

    Google Scholar 

  • Kumagai, A., and K. Takahashi. 1997 Imported eggs responsible for the outbreaks of cold-water disease among cultured coho salmon in Japan Fish Pathol. 32 231–232

    Article  Google Scholar 

  • Kumagai, A., S. Yamakoa, K. Takahashi, H. Fukuda, and H. Wakabayashi. 2000 Waterborne transmission of Flavobacterium psychrophilum in coho salmon eggs Fish Pathol. 35 25–28

    Article  Google Scholar 

  • LaFrentz, B. R., S. E. LaPatra, G. R. Jones, J. L. Congleton, B. Sun, and K. D. Cain. 2002 Characterization of serum and mucosal antibody responses and relative per cent survival in rainbow trout, Oncorhynchus mykiss (Walbaum), following immunization and challenge with Flavobacterium psychrophilum J. Fish Dis. 25 703–713

    Article  CAS  Google Scholar 

  • LaFrentz, B. R., S. E. LaPatra, G. R. Jones, and K. D. Cain. 2003 Passive immunization of rainbow trout, Oncorhynchus mykiss (Walbaum), against Flavobacterium psychrophilum, the causative agent of bacterial coldwater disease and rainbow trout fry syndrome J. Fish Dis. 26 377–384

    Article  Google Scholar 

  • Leadbetter, E. R.. 1974 Order II: Cytophagales Nomen novum In: R. E. Buchanan and N. E. Gibbons (Eds.) Bergey’s Manual of Determinative Bacteriology, 8th ed Williams & Wilkins Baltimore, MD 99–122

    Google Scholar 

  • Lednicka, D., J. Mergaert, M. C. Cnockaert, and J. Swings. 2002 Isolation and identification of cellulolytic bacteria involved in the degradation of natural cellulosic fibres Syst. Appl. Microbiol. 23 292–299

    Article  Google Scholar 

  • Lee, K.-B., and G.-J. Heo. 1998 First isolation and identification of Cytophaga psychrophila from cultured ayu in Korea Fish Pathol. 33 37–38

    Article  CAS  Google Scholar 

  • Lehmann, J., D. Mock, F.-J. Stürenberg, and J.-F. Bernardet. 1991 First isolation of Cytophaga psychrophila from a systemic disease in eel and cyprinids Dis. Aquat. Org. 10 217–220

    Article  Google Scholar 

  • Lelliott, R. A., and D. E. Stead. 1987 Methods for the Diagnosis of Bacterial Diseases in Plants Blackwell Scientific Publications Oxford, UK

    Google Scholar 

  • Lewin, R. A. 1969 A classification of Flexibacteria J. Gen. Microbiol. 58 189–206

    Article  PubMed  CAS  Google Scholar 

  • Liao, C.-H., and J. M. Wells. 1986 Properties of Cytophaga johnsonae strains causing spoilage of fresh produce at food markets Appl. Environ. Microbiol. 52 1261–1265

    PubMed  CAS  Google Scholar 

  • Liebert, C. A., M. A. Hood, F. H. Deck, K. Bishop, and D. K. Flaherty. 1984 Isolation and characterization of a new Cytophaga species implicated in a work-related lung disease Appl. Environ. Microbiol. 48 936–943

    PubMed  CAS  Google Scholar 

  • Liu, H., S. Izumi, and H. Wakabayashi. 2001 Detection of Flavobacterium psychrophilum in various organs of ayu Plecoglossus altivelis by in situ hybridization Fish Pathol. 36 7–11

    Article  Google Scholar 

  • Lorenzen, E., and N. Karas. 1992 Detection of Flexibacter psychrophilus by immunofluorescence in fish suffering from fry mortality syndrome: A rapid diagnostic method Dis. Aquat. Org. 13 231–234

    Article  Google Scholar 

  • Lorenzen, E. 1993 The importance of the brand of the beef extract in relation to the growth of Flexibacter psychrophilus in Anacker and Ordal’s medium Bull. Eur. Ass. Fish Pathol. 13 64–65

    Google Scholar 

  • Lorenzen, E. 1994 Studies on Flexibacter psychrophilus in Relation to Rainbow Trout Fry Syndrome (RTFS) [PhD thesis] National Veterinary Laboratory, Århus, and Royal Veterinary and Agriculture University Copenhagen, Denmark

    Google Scholar 

  • Lorenzen, E., I. Dalsgaard, and J.-F. Bernardet. 1997 Characterization of isolates of Flavobacterium psychrophilum associated with cold-water disease or rainbow trout fry syndrome I: phenotypic and genomic studies Dis. Aquat. Org. 31 197–208

    Article  CAS  Google Scholar 

  • Lorenzen, E., and N. J. Olesen. 1997 Characterization of isolates of Flavobacterium psychrophilum associated with cold-water disease or rainbow trout fry syndrome. II: Serological studies Dis. Aquat. Org. 31 209–220

    Article  Google Scholar 

  • Lumsden, J. S., V. E. Ostland, P. J. Byrne, and H. W. Ferguson. 1993 Detection of a distinct gill-surface antibody response following horizontal infection and bath challenge of brook trout Salvelinus fontinalis with Flavobacterium branchiophilum, the causative agent of bacterial gill disease Dis. Aquat. Org. 16 21–27

    Article  Google Scholar 

  • Lumsden, J. S., V. E. Ostland, D. D. MacPhee, J. Derksen, and H. W. Ferguson. 1994 Protection of rainbow trout from experimentally induced bacterial gill disease caused by Flavobacterium branchiophilum J. Aquat. Anim. Health 6 292–302

    Article  Google Scholar 

  • Lumsden, J. S., V. E. Ostland, and H. W. Ferguson. 1996 Necrotic myositis in cage cultured rainbow trout, Oncorhynchus mykiss (Walbaum), caused by Flexibacter psychrophilus J. Fish Dis. 19 113–119

    Article  Google Scholar 

  • MacLean, L. L., E. Vinogradov, E. M. Crump, M. B. Perry, and W. W. Kay. 2001 The structure of the lipopolysaccharide O-antigen produced by Flavobacterium psychrophilum (259–93) Eur. J. Biochem. 268 2710–2716

    Article  PubMed  CAS  Google Scholar 

  • MacLean, L. L., M. B. Perry, E. M. Crump, and W. W. Kay. 2003 Structural characterization of the lipopolysaccharide O-polysaccharide antigen produced by Flavobacterium columnare ATCC 43622 Eur. J. Biochem. 270 3440–3446

    Article  PubMed  CAS  Google Scholar 

  • MacPhee, D. D., V. E. Ostland, J. S. Lumsden, and H. W. Ferguson. 1995 Development of an enzyme-linked immunosorbent assay (ELISA) to estimate the quantity of Flavobacterium branchiophilum on the gills of rainbow trout Oncorhynchus mykiss Dis. Aquat. Org. 21 13–23

    Article  Google Scholar 

  • Madetoja, J., P. Nyman, and T. Wiklund. 2000 Flavobacterium psychrophilum, invasion into and shedding by rainbow trout Oncorhynchus mykiss Dis. Aquat. Org. 43 27–38

    Article  PubMed  CAS  Google Scholar 

  • Madetoja, J., M.-L. Hänninen, V. Hirvelä-Koski, I. Dalsgaard, and T. Wiklund. 2001 Phenotypic and genotypic characterization of Flavobacterium psychrophilum from Finnish fish farms J. Fish Dis. 24 469–479

    Article  Google Scholar 

  • Madetoja, J., and T. Wiklund. 2002 Detection of the fish pathogen Flavobacterium psychrophilum in water from fish farms System. Appl. Microbiol. 25 259–266

    Article  CAS  Google Scholar 

  • Madetoja, J., S. Nystedt, and T. Wiklund. 2003 Survival and virulence of Flavobacterium psychrophilum in water microcosms FEMS Microbiol. Ecol. 43 217–223

    Article  PubMed  CAS  Google Scholar 

  • Madsen, L., and I. Dalsgaard. 1998 Characterization of Flavobacterium psychrophilum: comparison of proteolytic activity and virulence of strains isolated from rainbow trout (Oncorhynchus mykiss) In: A. C. Barnes, G. A. Davidson, M. P. Hiney, and D. McIntosh (Eds.) Methodology in Fish Diseases Research Fisheries Research Services Aberdeen, UK 45–52

    Google Scholar 

  • Madsen, L., and I. Dalsgaard. 2000 Comparative studies of Danish Flavobacterium psychrophilum isolates: Ribotypes, plasmid profiles, serotypes and virulence J. Fish Dis. 23 211–218

    Article  Google Scholar 

  • Maeda, T., M. Murakami, S. Ohsugi, M. Furushita, A. Mitsutani, and T. Shiba. 1998 Perspectives of the development of 16S rDNA probe specific for algicidal and/or algal-lytic bacteria Fish. Science 64 861–865

    CAS  Google Scholar 

  • Mahmoud, B. S. M., K. Yamazaki, K. Miyashita, S. Il-Shik, C. Dong-Suk, and T. Suzuki. 2004 Bacterial microflora of carp (Cyprinus carpio) and its shelf-life extension by essential oil compounds Food Microbiol. 21 657–666

    Article  CAS  Google Scholar 

  • Manz, W., R. Amann, W. Ludwig, M. Vancanneyt, and K.-H. Schleifer. 1996 Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment Microbiology 142 1097–1106

    Article  PubMed  CAS  Google Scholar 

  • Mata, M., A. Skarmeta, and Y. Santos. 2002 A proposed serotyping system for Flavobacterium psychrophilum Lett. Appl. Microbiol. 35 166–170

    Article  PubMed  CAS  Google Scholar 

  • McBride, M. J., and S. A. Baker. 1996 Development of techniques to genetically manipulate members of the genera Cytophaga, Flavobacterium, Flexibacter, and Sporocytophaga Appl. Environ. Microbiol. 62 3017–3022

    PubMed  CAS  Google Scholar 

  • McBride, M. J., and M. J. Kempf. 1996 Development of techniques for the genetic manipulation of the gliding bacterium Cytophaga johnsonae J. Bacteriol. 178 583–590

    PubMed  CAS  Google Scholar 

  • McBride, M. J. 2001 Bacterial gliding motility: multiple mechanisms for cell movement over surfaces Ann. Rev. Microbiol. 55 49–75

    Article  CAS  Google Scholar 

  • McBride, M. J., T. F. Braun, and J. L. Brust. 2003 Flavobacterium johnsoniae gldH is a lipoprotein that is required for gliding motility and chitin utilization J. Bacteriol. 185 6648–6657

    Article  PubMed  CAS  Google Scholar 

  • McBride, M. J., and T. F. Braun. 2004 GldI is a lipoprotein that is required for Flavobacterium johnsoniae gliding motility and chitin utilization J. Bacteriol. 186 2295–2302

    Article  PubMed  CAS  Google Scholar 

  • McCammon, S. A., B. H. Innes, J. P. Bowman, P. D. Franzmann, S. J. Dobson, P. E. Holloway, J. H. Skerratt, P. D. Nichols, and L. M. Rankin. 1998 Flavobacterium hibernum sp. nov., a lactose-utilizing bacterium from a freswater Antarctic lake Int. J. Syst. Bacteriol. 48 1405–1412

    Article  PubMed  CAS  Google Scholar 

  • McCammon, S. A., and J. P. Bowman. 2000 The taxonomy of Antarctic Flavobacterium species: description of Flavobacterium gillisiae sp. nov., Flavobacterium tegetincola sp. nov., and Flavobacterium xanthum sp. nov., nom. rev. and reclassification of [Flavobacterium] salegens as Salegentibacter salegens gen. nov., comb. nov Int. J. Syst. Evol. Microbiol. 50 1055–1063

    Article  PubMed  CAS  Google Scholar 

  • McCarthy, D. H. 1975 Columnaris disease J. Inst. Fish. Mgmt. 6 44–47

    Google Scholar 

  • McGrath, C. F., C. W. Moss, and R. P. Burchard. 1990 Effect of temperature shifts on gliding motility, adhesion, and fatty acid composition of Cytophaga sp. strain U67 J. Bacteriol. 172 1978–1982

    PubMed  CAS  Google Scholar 

  • Merle, C., D. Faure, M.-C. Urdaci, and M. Le Hénaff. 2003 Purification and characterization of a membrane glycoprotein from the fish pathogen Flavobacterium psychrophilum J. Appl. Microbiol. 94 1120–1127

    Article  PubMed  CAS  Google Scholar 

  • Meyers, T. R. 1989 Apparent chronic bacterial myeloencephalitis in hatchery-reared juvenile coho salmon Oncorhynchus kisutch in Alaska Dis. Aquat. Org. 6 217–219

    Article  Google Scholar 

  • Michel, C., D. Antonio, and R. P. Hedrick. 1999 Production of viable cultures of Flavobacterium psychrophilum: Approach and control Res. Microbiol. 150 351–358

    Article  PubMed  CAS  Google Scholar 

  • Michel, C., S. Messiaen, and J.-F. Bernardet. 2002 Muscle infections in imported neon tetra, Paracheirodon innesi Myers: Limited occurrence of microsporidia and predominance of severe forms of columnaris disease caused by an Asian genomovar of Flavobacterium columnare J. Fish Dis. 25 253–263

    Article  Google Scholar 

  • Michel, C., and C. Garcia. 2003 Virulence stability in Flavobacterium psychrophilum after storage and preservation according to different procedures Vet. Res. 34 127–132

    Article  PubMed  Google Scholar 

  • Michel, C., B. Kerouault, and C. Martin. 2003 Chloramphenicol and florfenicol susceptibility of fish-pathogenic bacteria isolated in France: Comparison of minimum inhibitory concentration, using recommended provisory standards for fish bacteria J. Appl. Microbiol. 95 1008–1015

    Article  PubMed  CAS  Google Scholar 

  • Míguez, B., and M. P. Combarro. 2003 Bacteria associated with sardine (Sardina pilchardus) eggs in a natural environment (Ría de Vigo, Galicia, northwestern Spain) FEMS Microbiol. Ecol. 44 329–334

    Article  PubMed  CAS  Google Scholar 

  • Møller, J. D., J. L. Larsen, L. Madsen, and I. Dalsgaard. 2003 Involvement of a sialic acid-binding lectin with hemagglutination and hydrophobicity of Flavobacterium psychrophilum Appl. Environ. Microbiol. 69 5275–5280

    Article  PubMed  CAS  Google Scholar 

  • Moore, W. E. C., E. P. Cato, and L. V. H. Moore. 1985 Index of the bacterial and yeast nomenclatural changes published in the International Journal of Systematic Bacteriology since the 1980 Approved Lists of Bacterial Names (1 January 1980 to 1 January 1985) Int. J. Syst. Bacteriol. 35 382–407

    Article  Google Scholar 

  • Moore, A. A., M. E. Eimers, and M. A. Cardella. 1990 Attempts to control Flexibacter columnaris epizootics in pond-reared channel catfish by vaccination J. Aquat. Anim. Health 2 109–111

    Article  Google Scholar 

  • Moreno, Y., C. R. Arias, H. Meier, E. Garay, and R. Aznar. 1999 In situ analysis of the bacterial communities associated to farmed eel by whole-cell hybridization Lett. Appl. Microbiol. 29 160–165

    Article  PubMed  CAS  Google Scholar 

  • Morita, R. Y. 1975 Psychrophilic bacteria Bacteriol. Rev. 39 144–167

    PubMed  CAS  Google Scholar 

  • Morrison, C., J. Cornick, G. Shum, and B. Zwicker. 1981 Microbiology and histopathology of “saddleback” disease of underyearling Atlantic salmon, Salmo salar L J. Fish Dis. 4 243–258

    Article  Google Scholar 

  • Mudarris, M., B. Austin, P. Segers, M. Vancanneyt, B. Hoste, and J.-F. Bernardet. 1994 Flavobacterium scophthalmum sp. nov., a pathogen of turbot (Scophthalmus maximus L.) Int. J. Syst. Bacteriol. 44 447–453

    Article  PubMed  CAS  Google Scholar 

  • Müller, K.-D., E. N. Schmid, and R. Michel. 1999 Intracellular bacteria of Acanthamoebae resembling Legionella spp. turned out to be Cytophaga sp Zbl. Bakteriol. 289 389–397

    Article  Google Scholar 

  • Naas, T., S. Bellais, and P. Nordmann. 2003 Molecular and biochemical characterization of a carbapenem-hydrolyzing beta-lactamase from Flavobacterium johnsoniae J. Antimicrob. Chemother. 51 267–273

    Article  PubMed  CAS  Google Scholar 

  • Nakagawa, Y., and K. Yamasato. 1993 Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis J. Gen. Microbiol. 139 1155–1161

    Article  PubMed  CAS  Google Scholar 

  • Nakagawa, Y., and K. Yamasato. 1996 Emendation of the genus Cytophaga and transfer of Cytophaga agarovorans and Cytophaga salmonicolor to Marinilabilia gen. nov.: Phylogenetic analysis of the Flavobacterium-Cytophaga complex Int. J. Syst. Bacteriol. 46 599–603

    Article  Google Scholar 

  • Nakagawa, Y., M. Suzuki, and K. Hatano. 2001 Phylogenetic diversity of Cytophaga-like strains isolated from the sub-tropical zone of Japan IFO Res. Commun. 20 61–71

    Google Scholar 

  • Nedoluha, P. C., and D. Westhoff. 1997 Microbiological analysis of striped bass (Morone saxatilis) grown in a recirculating system J. Food Protect. 60 948–953

    Google Scholar 

  • Needleman, D. S., and R. E. Pacha. 1974 Isolation and partial characterization of a bacteriocin from Chondrococcus columnaris Abstr. Ann. Meet. Am. Soc. Microbiol. 74 21

    Google Scholar 

  • Nematollahi, A., A. Decostere, F. Pasmans, R. Ducatelle, and F. Haesebrouck. 2003a Adhesion of high and low virulence Flavobacterium psychrophilum strains to isolated gill arches of rainbow trout Oncorhynchus mykiss Dis. Aquat. Org. 55 101–107

    Article  PubMed  Google Scholar 

  • Nematollahi, A., A. Decostere, F. Pasmans, and F. Haesebrouck. 2003b Flavobacterium psychrophilum infections in salmonid fish J. Fish Dis. 26 563–574

    Article  PubMed  CAS  Google Scholar 

  • Newton, J. C., T. M. Wood, and M. M. Hartley. 1997 Isolation and partial characterization of extracellular proteases produced by isolates of Flavobacterium columnare derived from channel catfish J. Aquat. Anim. Health 9 75–85

    Article  Google Scholar 

  • Nieto, T. P., A. E. Toranzo, and J. L. Barja. 1984 Comparison between the bacterial flora associated with fingerling rainbow trout cultured in two different hatcheries in the North-West of Spain Aquaculture 42 193–206

    Article  Google Scholar 

  • Nikoskelainen, S., S. Salminen, G. Bylund, and A. C. Ouwehand. 2001 Characterization of the properties of human-and dairy-derived probiotics for prevention of infectious diseases in fish Appl. Environ. Microbiol. 67 2430–2435

    Article  PubMed  CAS  Google Scholar 

  • Nilsson, W. B., and M. S. Strom. 2002 Detection and identification of bacterial pathogens of fish in kidney tissue using terminal restriction fragment length polymorphism (T-RFLP) analysis of 16S rRNA genes Dis. Aquat. Org. 48 175–185

    Article  PubMed  CAS  Google Scholar 

  • Nogales, B., K. N. Timmis, D. B. Nedwell, and A. M. Osborn. 2002 Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA Appl. Environ. Microbiol. 68 5017–5025

    Article  PubMed  CAS  Google Scholar 

  • Nomura, S., and N. Ohara. 1994 Production and some properties of the extracellular proteases of Cytophaga columnaris Fish. Science 60 97–102

    CAS  Google Scholar 

  • Obach, A., and F. Baudin-Laurencin. 1991 Vaccination of rainbow trout (Oncorhynchus mykiss) against the visceral form of cold-water disease Dis. Aquat. Org. 12 13–15

    Article  Google Scholar 

  • Oppong, D., V. M. King, and J. A. Bowen. 2003 Isolation and characterization of filamentous bacteria from paper mill slimes Int. Biodeter. Biodegrad. 52 53–62

    Article  CAS  Google Scholar 

  • Ordal, E. J., and R. R. Rucker. 1944 Pathogenic Myxobacteria Proc. Soc. Exp. Biol. Med. 56 15–18

    Google Scholar 

  • Ostland, V. E., H. W. Ferguson, and R. M. W. Stevenson. 1989 Case report: bacterial gill disease in goldfish Carassius auratus Dis. Aquat. Org. 6 179–184

    Article  Google Scholar 

  • Ostland, V. E., J. S. Lumsden, D. D. MacPhee, and H. W. Ferguson. 1994 Characteristics of Flavobacterium branchiophilum, the cause of salmonid bacterial gill disease in Ontario J. Aquat. Anim. Health 6 13–26

    Article  Google Scholar 

  • Ostland, V. E., P. J. Byrne, D. J. Speare, M. A. Thornburn, A. Cook, M. Morrison, and H. W. Ferguson. 1995 Comparison of formalin and chloramine-T for control of a mixed infection (bacterial gill disease and ichthyobodiasis) in rainbow trout J. Aquat. Anim. Health 7 118–123

    Article  Google Scholar 

  • Ostland, V. E., D. D. MacPhee, J. S. Lumsden, and H. W. Ferguson. 1995 Virulence of Flavobacterium branchiophilum in experimentally infected salmonids J. Fish Dis. 18 249–262

    Article  Google Scholar 

  • Ostland, V. E., D. G. McGrogan, and H. W. Ferguson. 1997 Cephalic osteochondritis and necrotic scleritis in intensively reared salmonids associated with Flexibacter psychrophilus J. Fish Dis. 20 443–451

    Article  Google Scholar 

  • Ostland, V. E., P. J. Byrne, J. S. Lumsden, D. D. MacPhee, J. A. Derksen, M. Haulena, K. Skar, E. Myhr, and H. W. Ferguson. 1999 Atypical bacterial gill disease: A new form of bacterial gill disease affecting intensively reared salmonids J. Fish Dis. 22 351–358

    Article  Google Scholar 

  • Ostland, V. E., P. J. Byrne, G. Hoover, and H. W. Ferguson. 2000 Necrotic myositis of rainbow trout, Oncorhynchus mykiss (Walbaum): proteolytic characteristics of a crude extracellular preparation from Flavobacterium psychrophilum J. Fish Dis. 23 329–336

    Article  CAS  Google Scholar 

  • O’Sullivan, L. A., A. J. Weightman, and J. C. Fry. 2002 New degenerate Cytophaga-Flexibacter-Bacteroides-specific 16S ribosomal DNA-targeted oligonucleotide probes reveal high bacterial diversity in River Taff epilithon Appl. Environ. Microbiol. 68 201–210

    Article  PubMed  CAS  Google Scholar 

  • Otis, E. J. 1984 Lesions of Coldwater Disease in Steelhead Trout (Salmo gairdneri): The Role of Cytophaga psychrophila Extracellular Products [MSc thesis] University of Rhode Island Kingston, RI

    Google Scholar 

  • Ototake, M., and H. Wakabayashi. 1985 Characteristics of extracellular products of Flavobacterium sp., a pathogen of bacterial gill disease Fish Pathol. 20 167–171

    Article  Google Scholar 

  • Oyaizu, H., and K. Komagata. 1981 Chemotaxonomic and phenotypic characterization of the strains of species in the Flavobacterium-Cytophaga complex J. Gen. Appl. Microbiol. 27 57–107

    Article  CAS  Google Scholar 

  • Pacha, R. E., and E. J. Ordal. 1967 Histopathology of experimental columnaris disease in young salmon J. Comp. Pathol. 77 419–423

    Article  PubMed  CAS  Google Scholar 

  • Pacha, R. E., and E. J. Ordal. 1970 Myxobacterial Diseases of Salmonids American Fisheries Society, Diseases of Fishes and Shellfishes Bethesda, Maryland 5 243–257

    Google Scholar 

  • Pearce, D. A. 2003 Bacterioplankton community structure in a maritime Antarctic oligotrophic lake during a period of holomixis, as determined by denaturing gradient gel electrophoresis (DGGE) and fluorescence in situ hybridization (FISH) Microb. Ecol. 46 92–105

    Article  PubMed  CAS  Google Scholar 

  • Rahman, H., A. Kuroda, J. M. Dijkstra, I. Kiryu, T. Nakanishi, and M. Ototake. 2002 The outer membrane fraction of Flavobacterium psychrophilum induces protective immunity in rainbow trout and ayu Fish Shell. Immunol. 12 169–179

    Article  Google Scholar 

  • Rangdale, R. E., and K. Way. 1995 Rapid identification of Cytophaga psychrophila from infected spleen tissue using an enzyme-linked-immunosorbent assay (ELISA) Bull. Eur. Ass. Fish Pathol. 15 213–216

    Google Scholar 

  • Rangdale, R. E., R. H. Richards, and D. J. Alderman. 1996 Isolation of Cytophaga psychrophila, causal agent of rainbow trout fry syndrome (RTFS) from reproductive fluids and egg surfaces of rainbow trout (Oncorhynchus mykiss) Bull. Eur. Ass. Fish Pathol. 16 63–67

    Google Scholar 

  • Rangdale, R. E., R. H. Richards, and D. J. Alderman. 1997 Minimum inhibitory concentrations of selected antimicrobial compounds against Flavobacterium psychrophilum the causal agent of rainbow trout fry syndrome (RTFS) Aquaculture 158 193–201

    Article  CAS  Google Scholar 

  • Rangdale, R. E., R. H. Richards, and D. J. Alderman. 1999 Histopathological and electron microscopical observations on rainbow trout fry syndrome Vet. Rec. 144 251–254

    Article  PubMed  CAS  Google Scholar 

  • Reichardt, W., and R. Y. Morita. 1982 Influence of temperature adaptation on glucose metabolism in a psychrotrophic strain of Cytophaga johnsonae Appl. Environ. Microbiol. 44 1282–1288

    PubMed  CAS  Google Scholar 

  • Reichenbach, H. 1989 Order I: Cytophagales Leadbetter 1974 In: J. T. Staley, M. P. Bryant, N. Pfennig, and J. G. Holt (Eds.) Bergey’s Manual of Systematic Bacteriology Williams & Wilkins Baltimore, MD 3 2011–2013

    Google Scholar 

  • Reichenbach, H. 1992 The Order Cytophagales In: A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer (Eds.) The Prokaryotes Springer-Verlag New York, NY 2 3631–3675

    Google Scholar 

  • Riffel, A., and A. Brandelli. 2002 Isolation and characterization of a feather-degrading bacterium from the poultry processing industry J. Indust. Microbiol. Biotechnol. 29 255–258

    Article  CAS  Google Scholar 

  • Rintamäki-Kinnunen, P., J.-F. Bernardet, and A. Bloigu. 1997 Yellow pigmented filamentous bacteria connected with farmed salmonid fish mortality Aquaculture 149 1–14

    Article  Google Scholar 

  • Roberts, S. D. 1998 Ineffective control of bacterial coldwater disease after pre-spawning erythromycin injections Fish Health Newslett. 26 10–11

    Google Scholar 

  • Rodgers, M., D. Flanigan, S. Pfaller, W. Jakubowski, and B. Kinkle. 2003 Identification of a flavobacterium strain virulent against Giardia lamblia cysts World J. Microbiol. Biotechnol. 19 703–709

    Article  CAS  Google Scholar 

  • Saitou, N., and M. Nei. 1987 The neighbor-joining method: A new method for reconstructing phylogenetic trees Molec. Biol. Evol. 4 406–425

    PubMed  CAS  Google Scholar 

  • Sakai, M., M. K. Soliman, T. Yoshida, and M. Kobayashi. 1993 Identification of pathogenic fish bacteria using the API ZYM system Can. J. Fish. Aquat. Sci. 50 1137–1141

    Article  Google Scholar 

  • Sanders, J. E., R. A. Holt, and J. L. Fryer. 1976 Serological comparison of Flexibacter columnaris isolates using rabbit and rainbow trout (Salmo gairdneri) antisera J. Fish. Res. Board Can. 33 1386–1388

    Article  Google Scholar 

  • Sanni, A. I., A. A. Onilude, I. F. Fadahunsi, and R. O. Afolabi. 1999 Microbial deterioration of traditional alcoholic beverages in Nigeria Food Res. Int. 32 163–167

    Article  Google Scholar 

  • Schachte Jr., J. H., and E. C. Mora. 1973 Production of agglutinating antibodies in the channel catfish (Ictalurus punctatus) against Chondrococcus columnaris J. Fish. Res. Board Can. 30 116–118

    Article  Google Scholar 

  • Schmidt, A. S., M. S. Bruun, I. Dalsgaard, K. Pedersen, and J. L. Larsen. 2000 Occurrence of antimicrobial resistance in fish-pathogenic and environmental bacteria associated with four Danish rainbow trout farms Appl. Environ. Microbiol. 66 4908–4915

    Article  PubMed  CAS  Google Scholar 

  • Schmidtke, L. M., and J. Carson. 1995 Characteristics of Flexibacter psychrophilus isolated from Atlantic salmon in Australia Dis. Aquat. Org. 21 157–161

    Article  Google Scholar 

  • Secades, P., B. Alvarez, and J. A. Guijarro. 2001 Purification and characterization of a psychrophilic, calcium-induced, growth-phase-dependent metalloprotease from the fish pathogen Flavobacterium psychrophilum Appl. Environ. Microbiol. 67 2436–2444

    Article  PubMed  CAS  Google Scholar 

  • Secades, P., B. Alvarez, and J. A. Guijarro. 2003 Purification and properties of a new psychrophilic metalloprotease (Fpp2) in the fish pathogen Flavobacterium psychrophilum FEMS Microbiol. Lett. 226 273–279

    Article  PubMed  CAS  Google Scholar 

  • Shamsudin, M. N. 1994 Pathogenesis of Flexibacter columnaris and Immunity in Channel Catfish [PhD thesis] Auburn University Auburn, AL

    Google Scholar 

  • Shamsudin, M. N., and J. A. Plumb. 1996 Morphological, biochemical, and physiological characterization of Flexibacter columnaris isolates from four species of fish J. Aquat. Anim. Health 8 335–339

    Article  Google Scholar 

  • Shieh, H. S. 1980 Studies on the nutrition of a fish pathogen, Flexibacter columnaris Microbios Lett. 13 129–133

    CAS  Google Scholar 

  • Shoemaker, C. A., P. H. Klesius, C. Lim, and M. Yildirim. 2003 Feed deprivation of channel catfish, Ictalurus punctatus (Rafinesque), influences organosomatic indices, chemical composition and susceptibility to Flavobacterium columnare J. Fish Dis. 26 553–561

    Article  PubMed  CAS  Google Scholar 

  • Shotts, E. B., and C. E. Starliper. 1999 Flavobacterial diseases: Columnaris disease, cold-water disease and bacterial gill disease In: P. T. K. Woo and D. W. Bruno (Eds.) Fish Diseases and Disorders, Volume 3: Viral, Bacterial and Fungal Infections CABI Publishing Oxford, UK 559–576

    Google Scholar 

  • Skerman, V. B. D., V. McGowan, and P. H. A. Sneath. 1980 Approved lists of bacterial names Int. J. Syst. Bacteriol. 30 225–420

    Article  Google Scholar 

  • Soltani, M., and C. M. Burke. 1994 Responses of fish-pathogenic Cytophaga/Flexibacter-like bacteria (CFLB) to environmental conditions Bull. Eur. Ass. Fish Pathol. 14 185–187

    Google Scholar 

  • Soltani, M., B. Munday, and J. Carson. 1994 Susceptibility of some freshwater species of fish to infection by Cytophaga johnsonae Bull. Eur. Ass. Fish Pathol. 14 133–135

    Google Scholar 

  • Soltani, M., S. Shanker, and B. L. Munday. 1995 Chemotherapy of Cytophaga/Flexibacter-like bacteria (CFLB) infections in fish: studies validating clinical efficacies of selected antimicrobials J. Fish Dis. 18 555–565

    Article  CAS  Google Scholar 

  • Song, Y.-L., J. L. Fryer, and J. S. Rohovec. 1988a Comparison of gliding bacteria isolated from fish in North America and other areas of the Pacific rim Fish Pathol. 23 197–202

    Article  Google Scholar 

  • Song, Y.-L., J. L. Fryer, and J. S. Rohovec. 1988b Comparison of six media for the cultivation of Flexibacter columnaris Fish Pathol. 23 91–94

    Article  Google Scholar 

  • Stackebrandt, E., W. Frederiksen, G. M. Garrity, P. A. D. Grimont, P. Kämpfer, M. C. J. Maiden, X. Nesme, R. Rosselló-Mora, J. Swings, H. G. Trüper, L. Vauterin, A. C. Ward, and W. B. Whitman. 2002 Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology Int. J. Syst. Evol. Microbiol. 52 1043–1047

    Article  PubMed  CAS  Google Scholar 

  • Stanier, R. Y. 1947 Studies on non-fruiting myxobacteria. I: Cytophaga johnsonae n. sp., a chitin-decomposing myxobacterium J. Bacteriol. 53 297–315

    CAS  Google Scholar 

  • Stanier, R. Y. 1957 Order VIII: Myxobacterales Jahn 1915 In: R. S. Breed, E. G. D. Murray, and N. R. Smith (Eds.) Bergey’s Manual of Determinative Bacteriology, 7th ed Williams & Wilkins Baltimore, MD 854–891

    Google Scholar 

  • Starliper, C. E., E. B. Schotts, T. C. Hsu, and W. B. Schill. 1988 Genetic relatedness of some Gram-negative yellow pigmented bacteria from fishes and aquatic environments Microbios 56 181–198

    Google Scholar 

  • Stringer-Roth, K. M., W. Yunghans, and L. F. Caslake. 2002 Differences in chondroitin AC lyase activity of Flavobacterium columnare isolates J. Fish Dis. 25 687–691

    Article  CAS  Google Scholar 

  • Strohl, W. R., and L. R. Tait. 1978 Cytophaga aquatilis sp.nov., a facultative anaerobe isolated from the gills of freshwater fish Int. J. Syst. Bacteriol. 28 293–303

    Article  Google Scholar 

  • Suzuki, M., Y. Nakagawa, S. Harayama, and S. Yamamoto. 2001 Phylogenetic analysis and taxonomic study of marine Cytophaga-like bacteria: proposal for Tenacibaculum gen. nov. with Tenacibaculum maritimum comb. nov. and Tenacibaculum ovolyticum comb. nov., and description of Tenacibaculum mesophilum sp. nov. and Tenacibaculum amylolyticum sp. nov Int. J. Syst. Evol. Microbiol. 51 1639–1652

    Article  PubMed  CAS  Google Scholar 

  • Takeuchi, M., and A. Yokota. 1992 Proposals of Sphingobacterium faecium sp. nov., Sphingobacterium piscium sp. nov., Sphingobacterium heparinum comb. nov., Sphingobacterium thalpophilum, comb. nov. and two genospecies of the genus Sphingobacterium, and synonymy of Flavobacterium yabuuchiae and Sphingobacterium spiritivorum J. Gen. Appl. Microbiol. 38 465–482

    Article  Google Scholar 

  • Tamaki, H., S. Hanada, Y. Kamagata, K. Nakamura, N. Nomura, K. Nakano, and M. Matsumura. 2003 Flavobacterium limicola sp. nov., a psychrophilic, organic-polymer-degrading bacterium isolated from freshwater sediments Int. J. Syst. Evol. Microbiol. 53 519–526

    Article  PubMed  CAS  Google Scholar 

  • Taylor, P. W., and J. R. Winton. 2002 Optimization of nested polymerase chain reaction assays for identification of Aeromonas salmonicida, Yersinia ruckeri, and Flavobacterium psychrophilum J. Aquat. Anim. Health 14 216–224

    Article  Google Scholar 

  • Teska, J. D. 1993 Assay to evaluate the reaction kinetics of chondroitin AC lyase produced by Cytophaga columnaris J. Aquat. Anim. Health 5 259–264

    Article  Google Scholar 

  • Tiirola, M., E. T. Valtonen, P. Rintamäki-Kinnunen, and M. S. Kulomaa. 2002 Diagnosis of flavobacteriosis by direct amplification of rRNA genes Dis. Aquat. Org. 51 93–100

    Article  PubMed  CAS  Google Scholar 

  • Topley, W. W. C., and G. S. Wilson. 1929 The Principles of Bacteriology and Immunity, 1st ed Edward Arnold London, UK

    Google Scholar 

  • Topp, E., R. L. Crawford, and R. S. Hanson. 1988 Influence of readily metabolizable carbon on pentachlorophenol metabolism by a pentachlorophenol-degrading Flavobacterium sp Appl. Environ. Microbiol. 54 2452–2459

    PubMed  CAS  Google Scholar 

  • Toyama, T., K. Kita-Tsukamoto, and H. Wakabayashi. 1994 Identification of Cytophaga psychrophila by PCR targeted 16S ribosomal RNA Fish Pathol. 29 271–275

    Article  CAS  Google Scholar 

  • Toyama, T., K. Kita-Tsukamoto, and H. Wakabayashi. 1996 Identification of Flexibacter maritimus, Flavobacterium branchiophilum and Cytophaga columnaris by PCR targeted 16S ribosomal DNA Fish Pathol. 31 25–31

    Article  CAS  Google Scholar 

  • Tripathi, N. K., K. S. Latimer, C. R. Gregory, B. W. Ritchie, R. E. Wooley, and R. L. Walker. 2005 Development and evaluation of an experimental model of cutaneous columnaris disease in koi carp (Cyprinus carpio) J. Vet. Diag. Invest. 17 45–54

    Article  Google Scholar 

  • Triyanto, and H. Wakabayashi. 1999 Genotypic diversity of strains of Flavobacterium columnare from diseased fishes Fish Pathol. 34 65–71

    Article  Google Scholar 

  • Trust, T. J. 1975 Bacteria associated with the gills of salmonid fishes in freshwater J. Appl. Bacteriol. 38 225–233

    Article  PubMed  CAS  Google Scholar 

  • Turnbull, J. F. 1993 Bacterial gill disease and fin rot In: V. Inglis, R. J. Roberts, and N. R. Bromage (Eds.) Bacterial Diseases of Fish Blackwell Scientific Publications Oxford, UK 40–57

    Google Scholar 

  • Uddin, M. N., and H. Wakabayashi. 1997 Effects of temperature on growth and protease production of Cytophaga psychrophila Fish Pathol. 32 225–226

    Article  Google Scholar 

  • Urdaci, M. C., C. Chakroun, D. Faure, and J.-F. Bernardet. 1998 Development of a polymerase chain reaction assay for identification and detection of the fish pathogen Flavobacterium psychrophilum Res. Microbiol. 149 519–530

    Article  PubMed  CAS  Google Scholar 

  • Vandamme, P., J.-F. Bernardet, P. Segers, K. Kersters, and B. Holmes. 1994 New perspectives in the classification of the flavobacteria: description of Chryseobacterium gen. nov., Bergeyella gen. nov., and Empedobacter nom. rev Int. J. Syst. Bacteriol. 44 827–831

    Article  Google Scholar 

  • Vandamme, P., B. Pot, M. Gillis, P. De Vos, K. Kersters, and J Swings. 1996 Polyphasic taxonomy, a consensus approach to bacterial systematics Microbiol. Rev. 60 407–438

    PubMed  CAS  Google Scholar 

  • Van der Meulen, H. J., W. Harder, and H. Veldkamp. 1974 Isolation and characterization of Cytophaga flevensis sp. nov., a new agarolytic flexibacterium Ant. v. Leeuwenhoek 40 329–346

    Article  Google Scholar 

  • Van Trappen, S., J. Mergaert, S. Van Eygen, P. Dawynt, M. C. Cnockaert, and J. Swings. 2002 Diversity of 746 heterotrophic bacteria isolated from microbial mats from ten Antarctic lakes System. Appl. Microbiol. 25 603–610

    Article  Google Scholar 

  • Van Trappen, S., J. Mergaert, and J. Swings. 2003 Flavobacterium gelidilacus sp. nov., isolated from microbial mats in Antarctic lakes Int. J. Syst. Evol. Microbiol. 53 1241–1245

    Article  PubMed  CAS  Google Scholar 

  • Van Trappen, S., I. Vandecandelaere, J. Mergaert and J. Swings. 2003 Flavobacterium degerlachei sp. nov., Flavobacterium frigoris sp. nov. and Flavobacterium micromati sp. nov., novel psychrophilic bacteria isolated from microbial mats in Antarctic lakes Int. J. Syst. Evol. Microbiol. 54 85–92

    Article  CAS  Google Scholar 

  • Van Trappen, S., I. Vandecandelaere, J. Mergaert, and J. Swings. 2005 Flavobacterium fryxellicola sp. nov. and Flavobacterium psychrolimnae sp. nov., novel psychrophilic bacteria isolated from microbial mats in Antarctic lakes Int. J. Syst. Evol. Microbiol. 55 769–772

    Article  PubMed  CAS  Google Scholar 

  • Vatsos, I. N., K. D. Thompson, and A. Adams. 2001 Adhesion of the fish pathogen Flavobacterium psychrophilum to unfertilized eggs of rainbow trout (Oncorhynchus mykiss) and n-hexadecane Lett. Appl. Microbiol. 33 178–182

    Article  PubMed  CAS  Google Scholar 

  • Vatsos, I. N., K. D. Thompson, and A. Adams. 2002 Development of an immunofluorescent antibody technique (IFAT) and insitu hybridization to detect Flavobacterium psychrophilum in water samples Aquacult. Res. 33 1087–1090

    Article  Google Scholar 

  • Vatsos, I. N., K. D. Thompson, and A. Adams. 2003 Starvation of Flavobacterium psychrophilum in broth, stream water and distilled water Dis. Aquat. Org. 56 115–126

    Article  PubMed  Google Scholar 

  • Vinogradov, E., M. B. Perry, and W. W. Kay. 2003 The structure of the glycopeptides from the fish pathogen Flavobacterium columnare Carbohydr. Res. 338 2653–2658

    Article  PubMed  CAS  Google Scholar 

  • Von Graevenitz, A. 1990 Revised nomenclature of Campylobacter laridis, Enterobacter intermedium, and “Flavobacterium branchiophila.” Int. J. Syst. Bacteriol. 40 211

    Article  Google Scholar 

  • Von Weis, J. 1987 Über das Vorkommen einer Kaltwasserkrankheit bei Regenbogenforellen, Salmo gairdneri Tierärztl. Umschau 42 575–577

    Google Scholar 

  • Wakabayashi, H., and S. Egusa. 1974 Characteristics of myxobacteria associated with some freshwater fish diseases in Japan Bull. Jap. Soc. Sci. Fish. 40 751–757

    Article  Google Scholar 

  • Wakabayashi, H., S. Egusa, and J. L. Fryer. 1980 Characteristics of filamentous bacteria isolated from a gill disease of salmonids Can. J. Fish. Aquat. Sci. 37 1499–1507

    Article  Google Scholar 

  • Wakabayashi, H., and T. Iwado. 1985 Effects of a bacterial gill disease on the respiratory functions of juvenile rainbow trout In: A. E. Ellis (Ed.) Fish and Shellfish Pathology Academic Press London, UK 153–160

    Google Scholar 

  • Wakabayashi, H., G. J. Huh, and N. Kimura. 1989 Flavobacterium branchiophila sp.nov., a causative agent of bacterial gill disease of freshwater fishes Int. J. Syst. Bacteriol. 39 213–216

    Article  Google Scholar 

  • Wakabayashi, H. 1991 Effects of environmental conditions on the infectivity of Flexibacter columnaris to fish J. Fish Dis. 14 279–290

    Article  Google Scholar 

  • Wakabayashi, H. 1993 Columnaris disease In: V. Inglis, R. J. Roberts, and N. R. Bromage (Eds.) Bacterial Diseases of Fish Blackwell Scientific Publications Oxford, UK 23–39

    Google Scholar 

  • Wakabayashi, H., T. Toyama, and T. Iida. 1994 A study on serotyping of Cytophaga psychrophila isolated from fishes in Japan Fish Pathol. 29 101–104

    Article  Google Scholar 

  • Wayne, L. G., D. J. Brenner, R. R. Colwell, P. A. D. Grimont, O. Kandler, M. I. Krichevsky, L. H. Moore, W. E. C. Moore, R. G. E. Murray, E. Stackebrandt, M. P. Starr, & H. G. Trüper. 1987 Report of the ad hoc committee on reconciliation of approaches to bacterial systematics Int. J. Syst. Bacteriol. 37 463–464

    Article  Google Scholar 

  • Weisburg, W. G., Y. Oyaizu, H. Oyaizu, and C. R. Woese. 1985 Natural relationship between bacteroides and flavobacteria J. Bacteriol. 164 230–236

    PubMed  CAS  Google Scholar 

  • Weller, R., F. O. Glöckner, and R. Amann. 2000 16S rRNA-targeted oligonucleotide probes for the in situ detection of members of the phylum Cytophaga-Flavobacterium-Bacteroides System. Appl. Microbiol. 23 107–114

    Article  CAS  Google Scholar 

  • Wiklund, T., K. Kaas, L. Lönnström, and I. Dalsgaard. 1994 Isolation of Cytophaga psychrophila (Flexibacter psychrophilus) from wild and farmed rainbow trout (Oncorhynchus mykiss) in Finland Bull. Eur. Ass. Fish Pathol. 14 44–46

    Google Scholar 

  • Wiklund, T., L. Madsen, M. S. Bruun, and I. Dalsgaard. 2000 Detection of Flavobacterium psychrophilum from fish tissue and water samples by PCR amplification J. Appl. Microbiol. 88 299–307

    Article  PubMed  CAS  Google Scholar 

  • Wiklund, T., and I. Dalsgaard. 2002 Survival of Flavobacterium psychrophilum in rainbow trout (Oncorhynchus mykiss) serum in vitro Fish Shell. Immunol. 12 141–153

    Article  Google Scholar 

  • Wiklund, T., and I. Dalsgaard. 2003 Association of Flavobacterium psychrophilum with rainbow trout (Oncorhynchus mykiss) kidney phagocytes in vitro Fish Shell. Immunol. 15 387–395

    Article  CAS  Google Scholar 

  • Woese, C.R., D. Yang, L. Mandelco, and K. O. Stetter. 1990 The flexibacter-flavobacter connection System. Appl. Microbiol. 13 161–165

    Article  CAS  Google Scholar 

  • Xie, H. X., P. Nie, and B. J. Sun 2004 Characterization of two membrane-associated protease genes obtained from screening out-membrane protein genes of Flavobacterium columnare G4 J. Fish Dis. 27 719–729

    Article  PubMed  CAS  Google Scholar 

  • Yabuuchi, E., E. Tanimura, and I. Ohyama. 1979 Flavobacterium devorans ATCC 10829: A strain of Pseudomonas paucimobilis J. Gen. Appl. Microbiol. 25 95–107

    Article  CAS  Google Scholar 

  • Yi, H., H.-M. Oh, J.-H. Lee, S.-J. Kim, and J. Chun. 2005 Flavobacterium antarcticum sp. nov., a novel psychrotolerant bacterium isolated from the Antarctic Int. J. Syst. Evol. Microbiol. 55 637–641

    Article  PubMed  CAS  Google Scholar 

  • Zdanowski, M. K., P. Weglenski, P. Golik, J. M. Sasin, P. Borsuk, M. J. Zmuda, and A. Stankovic. 2004 Bacterial diversity in Adélie penguin, Pygoscelis adeliae, guano: molecular and morpho-physiological approaches FEMS Microbiol. Ecol. 50 163–173

    Article  PubMed  CAS  Google Scholar 

  • Zhu, F., S. Wang, and P. Zhou. 2003 Flavobacterium xinjiangense sp. nov. and Flavobacterium omnivorum sp. nov., novel psychrophiles from the China no. 1 glacier Int. J. Syst. Evol. Microbiol. 53 853–857

    Article  PubMed  CAS  Google Scholar 

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Bernardet, JF., Bowman, J.P. (2006). The Genus Flavobacterium . In: Dworkin, M., Falkow, S., Rosenberg, E., Schleifer, KH., Stackebrandt, E. (eds) The Prokaryotes. Springer, New York, NY. https://doi.org/10.1007/0-387-30747-8_17

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