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Crystallographic Software

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Book cover Macromolecular Crystallography Protocols

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 364))

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Abstract

Virtually all software is constantly changing and evolving (and crystallographic software is no exception), which makes it nearly impossible to write a chapter that will remain current. In this chapter, we introduce CRYSTAL, a website (http://crystal.uvm.edu) where a comprehensive list of available crystallographic packages for each step of macromolecular structure determination will be maintained. Additionally, we provide links to books, journals, and a number of educational sites on crystallography. For each program/site included at CRYSTAL, a detailed description will include: the most current version, the authors, and appropriate operating systems to host the program. Links to download the programs, available tutorials, and references to cite when using the program/site are also provided.

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References

  1. Berman, H. M., Westbrook, J., Feng, Z., et al. (2000) The Protein Data Bank. Nucleic Acids Res. 28, 235–242.

    Article  PubMed  CAS  Google Scholar 

  2. Dutta, S. and Berman, H. M. (2005) Large macromolecular complexes in the Protein Data Bank: a status report. Structure (Camb) 13, 381–388.

    Article  CAS  Google Scholar 

  3. Laskowski, R. A., Watson, J. D., and Thornton, J. M. (2005) Protein function prediction using local 3D templates. J. Mol. Biol. 351, 614–626.

    Article  PubMed  CAS  Google Scholar 

  4. Abola, E., Kuhn, P., Earnest, T., and Stevens, R. C. (2000) Automation of X-ray crystallography. Nat Struct Biol 7, 973–977.

    Article  PubMed  CAS  Google Scholar 

  5. Jiang, J. and Sweet, R. M. (2004) Protein Data Bank depositions from synchrotron sources. J. Synchrotron Radiation 11, 319–327.

    Article  CAS  Google Scholar 

  6. Arzt, S., Beteva, A., Cipriani, F., et al. (2005) Automation of macromolecular crystallography beamlines. Prog. Biophys. Mol. Biol. 89, 124–152.

    Article  PubMed  CAS  Google Scholar 

  7. Blundell, T. L. and Johnson, L. N. (1976) Protein Crystallography. Academic Press, New York, NY.

    Google Scholar 

  8. Ding, J. and Arnold, E. (2001) Macromolecular crystallography programs. In: International Tables for Crystallography, Vol. F, (Rossmann, M. G. and Arnold, E., eds.), Kluwer Academic Publishers, Dordrecht, Germany, pp. 685–694.

    Google Scholar 

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© 2007 Humana Press Inc.

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Everse, S.J., Doublié, S. (2007). Crystallographic Software. In: Doublié, S. (eds) Macromolecular Crystallography Protocols. Methods in Molecular Biology™, vol 364. Humana Press. https://doi.org/10.1385/1-59745-266-1:273

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  • DOI: https://doi.org/10.1385/1-59745-266-1:273

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-902-4

  • Online ISBN: 978-1-59745-266-3

  • eBook Packages: Springer Protocols

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