Skip to main content

Genomic Reconstruction by Serial Mitotic Recombination of Yeast Artificial Chromosomes

  • Protocol
  • 707 Accesses

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 349))

Abstract

DNA cloned in yeast artificial chromosomes (YACs) is a valuable resource for functional experiments in cell culture as well as whole animal systems. Where the size or chimerism of a YAC clone are limiting factors it may be desirable to generate recombinant YAC clones. One such approach is based on mitotic recombination, and we describe the development of a methodology that allows multiple recombination cycles for serial reconstruction of overlapping YACs. This approach employs retrofitting with standard plasmid vectors, transfer of YACs to a common haploid host by Kar1 mating, and selection for recombination with 5-fluoro-orotic acid.

This is a preview of subscription content, log in via an institution.

Buying options

Protocol
USD   49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   109.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Springer Nature is developing a new tool to find and evaluate Protocols. Learn more

References

  1. Cohen, D., Chumakov, I., and Weissenbach, J. (1993) A first-generation physical map of the human genome. Nature 366, 698–701.

    Article  CAS  PubMed  Google Scholar 

  2. Gnirke, A., Huxley, C., Peterson, K., and Olson, M. V. (1993) Microinjection of intact 200-to 500-kb fragments of YAC DNA into mammalian cells. Genomics 15, 659–667.

    Article  CAS  PubMed  Google Scholar 

  3. Pachnis, V., Pevny, L., Rothstein, R., and Costantini, F. (1990) Transfer of a yeast artificial chromosome carrying human DNA from Saccharomyces cerevisiae into mammalian cells. Proc. Natl. Acad. Sci. USA 87, 5109–5113.

    Article  CAS  PubMed  Google Scholar 

  4. Strauss, W. M. and Jaenisch, R. (1992) Molecular complementation of a collagen mutation in mammalian cells using yeast artificial chromosomes. Embo. J. 11, 417–422.

    CAS  PubMed  Google Scholar 

  5. Schedl, A., Beermann, F., Thies, E., Montoliu, L., Kelsey, G., and Schutz, G. (1992) Transgenic mice generated by pronuclear injection of a yeast artificial chromosome. Nucleic Acids Res. 20, 3073–3077.

    Article  CAS  PubMed  Google Scholar 

  6. Den Dunnen, J. T., Grootscholten, P. M., Dauwerse, J. G., et al. (1992) Reconstruction of the 2.4 Mb human DMD-gene by homologous YAC recombination. Hum. Mol. Genet. 1, 19–28.

    Article  Google Scholar 

  7. Ragoussis, J., Trowsdale, J., and Markie, D. (1992) Mitotic recombination of yeast artificial chromosomes. Nucleic Acids Res. 20, 3135–3138.

    Article  CAS  PubMed  Google Scholar 

  8. Spencer, F., Hugerat, Y., Simchen, G., Hurko, O., Connelly, C., and Hieter, P. (1994) Yeast kar1 mutants provide an effective method for YAC transfer to new hosts. Genomics 22, 118–126.

    Article  CAS  PubMed  Google Scholar 

  9. Rotomondo, F. and Carle, G. F. (1994) Genetic selection of meiotic and mitotic recombinant yeast artificial chromosomes. Nucleic Acids Res. 22, 1208–1214.

    Article  CAS  PubMed  Google Scholar 

  10. Markie, D., Ragoussis, J., Senger, G., et al. (1993) New vector for transfer of yeast artificial chromosomes to mammalian cells. Somat. Cell Mol. Genet. 19, 161–169.

    Article  CAS  PubMed  Google Scholar 

  11. Smith, D. R., Smyth, A. P., Strauss, W. M., and Moir, D. T. (1993) Incorporation of copy-number control elements into yeast artificial chromosomes by targeted homologous recombination. Mamm. Genome 4, 141–147.

    Article  CAS  PubMed  Google Scholar 

  12. Ito, H., Fukuda, Y., Murata, K., and Kimura, A. (1983) Transformation of intact yeast cells treated with alkali cations. J. Bacteriol. 153, 163–168.

    CAS  PubMed  Google Scholar 

  13. Markie, D. (1995) Arrayed preparation of YAC DNA for pulsed field gel analysis. Nucleic Acids Res. 23, 4526–4527.

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2006 Humana Press Inc., Totowa NJ

About this protocol

Cite this protocol

Markie, D., Jones, E., Ragoussis, J. (2006). Genomic Reconstruction by Serial Mitotic Recombination of Yeast Artificial Chromosomes. In: MacKenzie, A. (eds) YAC Protocols. Methods in Molecular Biology™, vol 349. Humana Press. https://doi.org/10.1385/1-59745-158-4:117

Download citation

  • DOI: https://doi.org/10.1385/1-59745-158-4:117

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-612-2

  • Online ISBN: 978-1-59745-158-1

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics