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Proteomic Analysis of Dictyostelium discoideum

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Dictyostelium discoideum Protocols

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 346))

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Abstract

The social amoeba Dictyostelium discoideum is already known as a model organism for a variety of cellular and molecular studies. Now that the genome sequencing project has been completed and different tools with which to overexpress or knock out genes are available, this species has also moved into the spotlight of functional genomics studies. Consequently, this genomic sequence information can now be exploited to realize D. discoideum proteomics projects. Here, we present validated protocols adapted for analysis of the D. discoideum proteome. The workflow described in this chapter comprises two-dimensional polyacrylamide gel electrophoresis for protein separation and peptide mass fingerprint (matrix-assisted laser desorption/ionization time-of-flight mass spectrometry) for protein identification.

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References

  1. O’Farrell, P. H. (1975) High resolution two-dimensional electrophoresis of proteins. J. Biol. Chem. 250, 4007–4021.

    CAS  Google Scholar 

  2. Klose, J. (1975) Protein mapping by combined isoelectric focusing and electrophoresis of mouse tissues. Humangenetik 26, 231–243.

    PubMed  CAS  Google Scholar 

  3. Görg, A., Weiss, W., and Dunn, M. J. (2004) Current two-dimensional electrophoresis technology for proteomics. Proteomics 4, 3665–3685.

    Article  PubMed  Google Scholar 

  4. Laemmli, U. K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680–685.

    Article  PubMed  CAS  Google Scholar 

  5. Schägger, H. and von Jagow, G. (1987) Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa. Anal. Biochem. 166, 368–379.

    Article  PubMed  Google Scholar 

  6. Neuhoff, V., Arold, N., Taube, D., and Ehrhardt, W. (1985) Improved staining of proteins in polyacrylamide gels including isoelectric focusing gels with clear background at nanogram sensitivity using Coomassie Brilliant Blue G-250 and R-250. Electrophoresis 9, 255–262.

    Article  Google Scholar 

  7. Rabilloud, T., Strub, J. M., Luche, S., van Dorsselaer, A., and Lunardi, J. (2001) A comparison between Sypro Ruby and ruthenium II tris (bathophenanthroline disulfonate) as fluorescent stains for protein detection in gels. Proteomics 1, 699–704.

    Article  PubMed  CAS  Google Scholar 

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© 2006 Humana Press Inc., Totowa, NJ

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Roth, U., Müller, S., Hanisch, FG. (2006). Proteomic Analysis of Dictyostelium discoideum . In: Eichinger, L., Rivero, F. (eds) Dictyostelium discoideum Protocols. Methods in Molecular Biology™, vol 346. Humana Press. https://doi.org/10.1385/1-59745-144-4:95

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  • DOI: https://doi.org/10.1385/1-59745-144-4:95

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-623-8

  • Online ISBN: 978-1-59745-144-4

  • eBook Packages: Springer Protocols

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