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Quantitative Analysis of Telomerase Activity and Telomere Length in Domestic Animal Clones

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Nuclear Reprogramming

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 325))

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Abstract

It has been speculated that incomplete epigenetic reprogramming of the somatic cell genome is the primary reason behind the developmental inefficiencies and postnatal abnormalities observed after nuclear transplantation in domestic animal clones. One chromosome structure that is altered in dividing somatic cells is telomere length—the terminal ends of linear chromosomes capped by repetitive sequences of G-rich noncoding DNA, (TTAGGG)n, and specific binding proteins. Telomeres are critical structures that function in maintaining chromosome stability and ensure the full replication of coding DNA by acting as a buffer to terminal DNA attrition due to the end replication problem. Telomere shortening limits cellular proliferation through a DNA damage signal activating permanent cell cycle arrest at a critical telomere length or through structural telomere alterations that prevents effective chromosome capping. Telomere-mediated signaling of cellular senescence has been established for many somatic cell types in vitro, except for germ cells, cancer lines, and regenerative tissues in which telomere length is maintained primarily by the ribonucleoprotein telomerase, a reverse transcriptase that synthesizes TTAGGG repeats de novo onto the chromosome ends. Telomere length discrepancies have been reported in animal clones as being shorter, no different, and even longer than in age-matched control animals, but the etiology is not yet understood. Possible explanations include differences in donor cell type and the efficiency of telomerase reprogramming. This chapter summarizes the conventional protocols and recent advances in telomere length and telomerase activity measurement that will help elucidate the mechanism(s) behind telomere length deregulation in somatic cell clones and its role in chromosomal instability, cellular senescence, and organismal aging in vivo.

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References

  1. Wilmut, I., Schnieke, A. E., McWhir, J., Kind, A. J., and Campbell, K. H. S. (1997) Viable offspring derived from fetal and adult mammalian cells. Nature 385, 810–813.

    Article  CAS  PubMed  Google Scholar 

  2. Wakayama, T., Perry, A. C.F., Zuccotti, M., Johnson, K. R., and Yanagimachi, R. (1998) Full-term development of mice from enucleated oocytes injected with cumulus cell nuclei. Nature 394, 369–374.

    Article  CAS  PubMed  Google Scholar 

  3. Kato, Y., Tani, T., Sotomaru, Y., Kurokawa. K,, Kato. J,, Doguchi. H,, Yasue. H,, et al. (1998) Eight calves cloned from somatic cells of a single adult. Science 282, 2095–2098.

    Article  CAS  PubMed  Google Scholar 

  4. Woods, G. L., White, K. L., Vanderwall, D. K., Li, G. P., Aston, K. I., Bunch, T. D., et al. (2003) A mule cloned from fetal cells by nuclear transfer. Science 301, 1063.

    Article  CAS  PubMed  Google Scholar 

  5. Rideout, W. M. III, Eggan, K., and Jaenisch, R. (2001) Nuclear cloning and epigenetic reprogramming of the genome. Science 293, 1093–1098.

    Article  CAS  PubMed  Google Scholar 

  6. Dean._ W., Santos, F., Stojkovic, M., Zakhartchenko, V., Walter, J., Wolf, E., et al. (2001) Conservation of methylation reprogramming in mammalian development: aberrant reprogramming in cloned embryos. Proc. Natl. Acad. Sci. USA 98, 13734–13738.

    Article  CAS  PubMed  Google Scholar 

  7. Xue, F., Tian, X. C., Du, F., Kubota, C., Taneja, M., Dinnyes, A., Dai, Y., et al. (2002) Aberrant patterns of X chromosome inactivation in bovine clones. Nat. Genet. 31, 216–220.

    Article  CAS  PubMed  Google Scholar 

  8. Humpherys, D., Eggan, K., Akutsu, H., Hochedlinger, K., Rideout, W. M. III, Biniszkiewicz, D., et al. (2001) Epigenetic instability in ES cells and cloned mice. Science 293, 95–97.

    Article  CAS  PubMed  Google Scholar 

  9. Betts, D. H., Bordignon, V., Hill, J., Winger, Q., Westhusin, M., Smith, L., King, W. (2001) Reprogramming of telomerase activity and rebuilding of telomere length in cloned cattle. Proc. Natl. Acad. Sci. USA 98, 1077–1082.

    Article  CAS  PubMed  Google Scholar 

  10. Miyashita, N., et al. (2002) Remarkable differences in telomere lengths among cloned cattle derived from different cell types. Biol. Reprod. 66, 1649–1655.

    Article  CAS  PubMed  Google Scholar 

  11. Allshire, R. C., Dempster, M., and Hastie, N. D. (1989) Human telomeres contain at least three types of G-rich repeats distributed non-randomLy. Nucleic Acids Res. 17, 4611–4627.

    Article  CAS  PubMed  Google Scholar 

  12. Preston, R. J. (1997) Telomeres, telomerase and chromosome stability. Radiat. Res. 147, 529–534.

    Article  CAS  PubMed  Google Scholar 

  13. Klobutcher, L. A., Swanton, M. T., Donini, P., and Prescott, D. M. (1981) All gene-sized DNA molecules in four species of hypotrichs have the same terminal sequence and an unusual 3′ terminus. Proc. Natl. Acad. Sci. USA 78, 3015–3019.

    Article  CAS  PubMed  Google Scholar 

  14. Wright, W. E., Tesmer, V. M., Huffman, K. E., Levene, S. D., and Shay, J. W. (1997) Normal human chromosomes have long G-rich telomeric overhangs at one end. Genes Dev. 11, 2801–2809.

    Article  CAS  PubMed  Google Scholar 

  15. McElligott, R., and Wellinger, R. J. (1997) The terminal DNA structure of mammalian chromosomes. EMBO J. 16, 3705–3714.

    Article  CAS  PubMed  Google Scholar 

  16. van Steensel, B., Smogorzewska, A., and de Lange, T. (1998) TRF2 protects human telomeres from end-to-end fusions. Cell 92, 401–413.

    Article  CAS  PubMed  Google Scholar 

  17. Huffman, K. E., Levene, S. D., Tesmer, V. M., Shay, J. W., and Wright, W. E. (2000) Telomere shortening is proportional to the size of the 3′ G-rich telomeric overhang. J. Biol. Chem. 275, 19719–19722.

    Article  CAS  PubMed  Google Scholar 

  18. McKee, B. D. (2004) Homologous pairing and chromosome dynamics in meiosis and mitosis. Biochim. Biophys. Acta 1677, 165–180.

    CAS  PubMed  Google Scholar 

  19. Allsopp, R. C., and Harley, C. B. (1995) Evidence for a critical telomere length in senescent human fibroblasts. Exp. Cell Res. 219, 130–136.

    Article  CAS  PubMed  Google Scholar 

  20. Harley, C. B., Flutcher, A. B., and Greider, C. W. (1990) Telomeres shorten during ageing of human fibroblasts. Nature 345, 458–460.

    Article  CAS  PubMed  Google Scholar 

  21. Harley, C. B., Vaziri, H., Counter, C. M., and Allsopp, R. C. (1992) The telomere hypothesis of cellular aging. Exp. Gerontol. 27, 375–382.

    Article  CAS  PubMed  Google Scholar 

  22. Stewart, S. A., Ben-Porath, I., Carey, V. J., O’Connor, B. F., Hahn, W. C., and Weinberg, R. A. (2003) Erosion of the telomeric single-strand overhang at replicative senescence. Nat. Genet. 33, 492–496.

    Article  CAS  PubMed  Google Scholar 

  23. Karlseder, J., Smogorzewska, A., de Lange, T. (2002) Senescence induced by altered telomere state, not telomere loss. Science 295, 2446–2449.

    Article  CAS  PubMed  Google Scholar 

  24. Li, G. Z., Eller, M. S., Firoozabadi, R., and Gilchrest, B. A. (2003) Evidence that exposure of the telomere 3′ overhang sequence induces senescence. Proc. Natl. Acad. Sci. USA 100, 527–531.

    Article  CAS  PubMed  Google Scholar 

  25. Greider, C. W., and Blackburn, E. H. (1985) Identification of a specific telomere terminal transferase activity in Tetrahymena extracts. Cell 43, 405–413.

    Article  CAS  PubMed  Google Scholar 

  26. Greider, C. W., and Blackburn, E. H. (1989) A telomeric sequence in the RNA of Tetrahymena telomerase required for telomere repeat synthesis. Nature 337, 331–337.

    Article  CAS  PubMed  Google Scholar 

  27. Collins, K., Kobayashy, R., and Greider, C. W. (1995) Purification of Tetrahymena telomerase and cloning of genes encoding the two protein components of the enzyme. Cell 81, 677–686.

    Article  CAS  PubMed  Google Scholar 

  28. Counter, C. M., Meyerson, M., Eaton, E. N., and Weinberg, R. A. (1997) The catalytic subunit of yeast telomerase. Proc. Natl. Acad. Sci. USA 94, 9202–9207.

    Article  CAS  PubMed  Google Scholar 

  29. Lingner, J., Hughes, T. R., Shevchenko, A., Mann, M., Lundblad, V., and Cech, T. R. (1997) Reverse transcriptase motifs in the catalytic subunit of telomerase. Science 276, 561–567.

    Article  CAS  PubMed  Google Scholar 

  30. Nakayama, J., Saito, M., Nakamura, H., Matsuura, A., and Ishikawa, F. (1997) TLP1: a gene encoding a protein component of mammalian telomerase is a novel member of WD repeats family. Cell 88, 875–884.

    Article  CAS  PubMed  Google Scholar 

  31. Kilian, A., Bowtell. D. D. L., Abud, H. E., Hime, G. R., Venter, D. J., Keese, P. K., et al. (1997) Isolation of a candidate human telomerase catalytic subunit gene, which reveals complex splicing patterns in different cell types. Hum. Mol. Genet. 6, 2011–2019.

    Article  CAS  PubMed  Google Scholar 

  32. Meyerson, M., Counter, C. M., Eaton, E. N., Ellisen, L. W., Steiner, P., Caddle, S. D., et al. (1997) hEST2, the putative human telomerase catalytic subunit gene is up-regulated in tumor cells and during immortalization. Cell 90, 785–795.

    Article  CAS  PubMed  Google Scholar 

  33. Ulaner, G. A., and Giudice, L. C. (1997) Developmental regulation of telomerase activity in human fetal tissues during gestation. Mol. Hum. Reprod. 3, 769–773.

    Article  CAS  PubMed  Google Scholar 

  34. Sharma, H. W., Sokoloski, J. A., Perez, J. R., Maltese, J. Y., Sartorelli, A. C., Stein, C. A., et al. (1995) Differentiation of immortal cells inhibits telomerase activity. Proc. Natl. Acad. Sci. USA 92, 12343–12346.

    Article  CAS  PubMed  Google Scholar 

  35. Counter, C. M., Avillion, A. A., Lefeuvre, C. E., Stewart, N. G., Greider, C. W., Harley, C. B., et al. (1992) Telomere shortening associated with chromosome instability is arrested in immortal cells which express telomerase activity. EMBO J. 11, 1921–1929.

    CAS  PubMed  Google Scholar 

  36. Kim, N. W., Piatyszek, M. A., Prowse, K. R., Harley, C. B., West, M. D., Ho, P. L., et al. (1994) Specific association of human telomerase activity with immortal cells and cancer. Science 266, 2011–2015.

    Article  CAS  PubMed  Google Scholar 

  37. Harle-Bachor, C., and Boukamp, P. (1996) Telomerase activity in the regenerative basal layer of the epidermis in human skin and in immortal and carcinoma-derived skin keratinocytes. Proc. Natl. Acad. Sci. USA 93, 6476–6481.

    Article  CAS  PubMed  Google Scholar 

  38. Wright, W. E., Brasiskyte, D., Piatyszek, M. A., and Shay, J. W. (1996) Experimental elongation of telomeres extends the lifespan of immortal x normal cell hybrids. EMBO J. 15, 1734–1741.

    CAS  PubMed  Google Scholar 

  39. Bodnar, A. G., Ouellette, M., Frolkis, M., Holt, S. E., Chiu, C.-P., Morin, G. B., et al. (1998) Extension of life-span by introduction of telomerase into normal human cells. Science 279, 349–352.

    Article  CAS  PubMed  Google Scholar 

  40. Nakayama, J.-I., Tahara, H., Tahara, E., Saito, M., Ito, K., Nakamura, H., et al. (1998) Telomerase activation by hTRT in human normal fibroblasts and hepatocellular carcinomas. Nat. Genet. 18, 65–68.

    Article  CAS  PubMed  Google Scholar 

  41. Lee, H.-W., Blasco, M. A., Gottlieb, G. J., Horner, J. W. II, Greider, C. W., and DePinho, R. A. (1998) Essential role of mouse telomerase in highly proliferative organs. Nature 392, 569–574.

    Article  CAS  PubMed  Google Scholar 

  42. Cherif, H., Tarry, J. L., Ozanne, S. E., and Hales, C. N. (2003) Ageing and telomeres: a study into organ-and gender-specific telomere shortening. Nucleic Acids Res. 31, 1576–1583.

    Article  CAS  PubMed  Google Scholar 

  43. Miller, R. A. (1996) The aging immune system: primer and prospectus. Science 273, 70–74.

    Article  CAS  PubMed  Google Scholar 

  44. D’Ippolito, G., Schiller, P. C., Ricordi, C., Roos, B. A., and Howard, G. A. (1999) Age-related osteogenic potential of mesenchymal stromal stem cells from human vertebral bone marrow. J. Bone Miner. Res. 14, 1115–1122.

    Article  PubMed  Google Scholar 

  45. Dimri, G. P., Lee, X., Basile, G., Acosta, M., Scott, G., Roskelley, C., et al. (1995) A biomarker that identifies senescent human cells in culture and in aging skin in vivo. Proc. Natl. Acad. Sci. USA 92, 9363–9367.

    Article  CAS  PubMed  Google Scholar 

  46. Shiels, P. G., Kind, A. J., Campbell, K. H. S., Waddington, D., Wilmut, I., Colman, A., et al (1999a) Analysis of telomere lengths in cloned sheep. Nature 399, 316–317.

    Article  CAS  PubMed  Google Scholar 

  47. Shiels, P. G., Kind, A. J., Campbell, K. H. S., Wilmut, I., Waddington, D., Colman, A., et al. (1999b) Analysis of telomere length in dolly, a sheep derived by nuclear transfer. Cloning 1, 119–125.

    Article  CAS  PubMed  Google Scholar 

  48. Clark, A. J., Ferrier P., Aslam S., Burl, S., Denning, C., Wylie, D., et al. (2003) Proliferative lifespan is conserved after nuclear transfer. Nat. Cell Biol. 5, 535–538.

    Article  CAS  PubMed  Google Scholar 

  49. Rhind, S., Cui, W., King, T., Ritchie, W., Wylie, D., and Wilmut, I. (2004) Dolly: A final Report. Reprod. Fertil. Devel. 16, 156.

    Article  Google Scholar 

  50. Kubota, C., Tian, X. C., and Yang, X. (2004) Serial bull cloning by somatic cell nuclear transfer. Nat. Biotechnol. 22, 693–694.

    Article  CAS  PubMed  Google Scholar 

  51. Jiang, L., Carter, D. B., Xu, J., Yang, X., Prather, R. S., and Tian, X. C. (2004) Telomere lengths in cloned transgenic pigs. Biol. Reprod. 70, 1589–1593.

    Article  CAS  PubMed  Google Scholar 

  52. Tian, X. C., Xu, J., and Yang, X. (2000) Normal telomere lengths found in cloned cattle. Nat. Genet. 26, 272–273.

    Article  CAS  PubMed  Google Scholar 

  53. Lanza, R. P., Cibelli, J. B., Blackwell, C., Cristofalo, V. J., Francis, M. K., Baerlocher, G. M., et al. (2000) Extension of cell life-span and telomere length in animals cloned from senescent somatic cells. Science 288, 665–669.

    Article  CAS  PubMed  Google Scholar 

  54. Kuhholzer-Cabot, B., and Brem, G. (2002) Aging of animals produced by somatic cell nuclear transfer. Exp. Gerontol. 37, 1317–1323.

    Article  PubMed  Google Scholar 

  55. Betts, D. H., and King, W. A. (1999) Telomerase activity and telomere detection during early bovine development. Dev. Genet. 25, 397–403.

    Article  CAS  PubMed  Google Scholar 

  56. Holt, S. E., Aisner, D. L., Shay, J. W., and Wright, W. E. (1997) Lack of cell cycle regulation of telomerase activity in human cells. Proc. Natl. Acad. Sci. USA 944, 10687–10692.

    Article  Google Scholar 

  57. Xu, J., and Yang, X. (2001) Telomerase activity in early bovine embryos derived from parthenogenetic activation and nuclear transfer. Biol. Reprod. 64, 770–774.

    Article  CAS  PubMed  Google Scholar 

  58. Wege, H., Chui, M. S., Le, H. T., Tran, J. M., and Zern, M. A. (2003) SYBR Green real-time telomeric repeat amplification protocol for the rapid quantification of telomerase activity. Nucleic Acids Res. 31, e3.

    Google Scholar 

  59. Maniatis, T., Fritsch, E. F., Sambrook, J. (1982) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.

    Google Scholar 

  60. Poon, S. S., Martens, U. M., Ward, R. K., and Lansdorp, P. M. (1999) Telomere length measurements using digital fluorescence microscopy. Cytometry 36, 267–278.

    Article  CAS  PubMed  Google Scholar 

  61. Rufer, N., Dragowska, W., Thornbury, G., Roosnek, E., and Lansdorp, P. M. (1998) Telomere length dynamics in human lymphocyte subpopulations measured by flow cytometry. Nat. Biotechnol. 16, 743–747.

    Article  CAS  PubMed  Google Scholar 

  62. O’Sullivan, J. N., Finley, J. C., Risques, R. A., Shen, W. T., Gollahon, K. A., Moskovitz, A. H., et al. (2004) Telomere length assessment in tissue sections by quantitative FISH: image analysis algorithms. Cytometry 58A, 120–131.

    Article  Google Scholar 

  63. Zijlmans, J. M., Marten, U. M. Poon, S. S. S., Raap, A. K., Tanke, H. J., Ward, R. K., et al. (1997) Telomeres in the mouse have large inter-hromosomal variations in the number of T2AG3 repeats. Proc. Natl. Acad. Sci. USA 94, 7423–7428.

    Article  CAS  PubMed  Google Scholar 

  64. Cawthon, R. M. (2002) Telomere measurment by quantitative PCR. Nucleic Acids Res. 30, e47.

    Article  PubMed  Google Scholar 

  65. Zhu, L., Hathcock, K. S., Hande, P., Lansdorp, P. M., Seldin, M. F., and Hodes, R. J. (1998) Telomere length regulation in mice is linked to a novel chromosome locus. Proc. Natl. Acad. Sci. USA 95, 8648–8653.

    Article  CAS  PubMed  Google Scholar 

  66. Kozik, A., Bradbury, E. M., and Zalensky, A. O. (2000) Identification and characterization of a bovine sperm protein that binds specifically to single-stranded telomeric deoxyribonucleic acid. Biol. Reprod. 62, 340–346.

    Article  CAS  PubMed  Google Scholar 

  67. Garcia-Cao, M., O’Sullivan, R., Peters, A. H., Jenuwein, T., and Blasco, M. A. (2004) Epigenetic regulation of telomere length in mammalian cells by the Suv39h1 and Suv39h2 histone methyltransferases. Nat. Genet. 36, 94–99.

    Article  CAS  PubMed  Google Scholar 

  68. Simerly, C., Dominko, T., Navara, C., Payne, C., Capuano, S., Gosman, G., et al. (2003) Molecular correlates of primate nuclear transfer failures. Science 300, 297.

    Article  PubMed  Google Scholar 

  69. Bureau, W. S., Bordignon, V., Leveillee, C., Smith, L. C., and King, W. A. (2003) Assessment of chromosomal abnormalities in bovine nuclear transfer embryos and in their donor cells. Cloning Stem Cells 5, 123–132.

    Article  CAS  PubMed  Google Scholar 

  70. Ogonuki, N., Inoue, K., Yamamoto, Y., Noguchi, Y., Tanemura, K., Suzuki, O., et al. (2002) Early death of mice cloned from somatic cells. Nat. Genet. 30, 253–254.

    Article  CAS  PubMed  Google Scholar 

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Betts, D.H., Perrault, S., Harrington, L., King, W.A. (2006). Quantitative Analysis of Telomerase Activity and Telomere Length in Domestic Animal Clones. In: Pells, S. (eds) Nuclear Reprogramming. Methods in Molecular Biology™, vol 325. Humana Press. https://doi.org/10.1385/1-59745-005-7:149

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  • DOI: https://doi.org/10.1385/1-59745-005-7:149

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-379-4

  • Online ISBN: 978-1-59745-005-8

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