Abstract
Viral food-borne illnesses have become very common in humans worldwide. Three viruses—noroviruses, rotavirus, and hepatitis A virus (HAV)—are implicated frequently in food-borne illness and have been ranked among the top 10 causes of food-borne disease over the past 10 years. The most common food vehicles for the transmission of enteric viruses to humans are shellfish, fruits, and vegetables. Foods may be contaminated by water tainted with untreated sewage or by contact with infected human food handlers. Virus concentrations in foods are usually low, as they are not able to multiply in situ. Therefore, the ability to detect traces of viruses in foods is essential in the development of tools for the investigation and possible prevention of viral disease outbreaks. Molecular approaches based on the amplification of viral RNA have been proposed for the specific and ultrasensitive detection of enteric viruses in foods. Nucleic acid sequence-based amplification (NASBA) is one of these molecular techniques showing great promise in viral detection. In this chapter, we describe two applications using NASBA techniques for the detection of hepatitis A virus and rotavirus.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Mead, P. S., Slutsker, L., Dietz, V., et al. (1999) Food-related illness and death in the United States. Emerg. Infect. Dis. 5, 607–625.
Jaykus, L.-A. (1999) Foodborne viruses: emerging agents of emerging techniques? Dairy Food Environ. Sanitation 19, 664.
Jiang, X., Graham, D. Y., Wang, K., and Estes, M. K. (1990) Norwalk virus genome: cloning and characterization. Science 250, 1580–1583.
Le Guyader, F., Haugarreau, L., Miossec, L., Dubois, L., and Pommepuy, M. (2000) Three-year study to assess human enteric viruses in shellfish. Appl. Environ. Microbiol. 66, 3241–3248.
Cliver, D. O. (1997) Virus transmission via food. World Health Stat Q. 50, 90–101.
Halliday, M. L., Kang, L. Y., Zhou, T. K., et al. (1991) An epidemic of hepatitis A attributable to the ingestion of raw clams in Shanghai, China. J. Infect. Dis. 164, 852–859.
Richards, G. P. (1985) Outbreaks of shellfish-associated enteric virus illness in the United States: requisite for development viral guidelines. J. Food Prot. 48, 815–823.
Desenclos, J. C., Klontz, K. C., Wilder, M. H., Nainan, O. V., Margolis, H. S., and Gunn, R. A. (1991) A multistate outbreak of hepatitis A caused by the consumption of raw oysters. Am. J. Public Health 81, 1268–1272.
Lees, D. (2000) Viruses and bivalve shellfish. Int. J. Food Microbiol. 59, 81–116.
Beauchat, L. R. (1995) Pathogenic microorganisms associated with fresh produce. J. Food Prot. 59, 204–216.
Appleton, H. (2000) Control of food-borne viruses. Br. Med. Bull. 56, 172–183.
De Zoysa, I. and Feachem, R. G. 1985. Interventions for the control of diarrheal diseases among young children: rotavirus and cholera immunization. Bull. W. H. O. 63, 569–583.
Holzel, H., Cubitt, D. W., McSwiggan, D. A., Sanderson, P. J., and Church, J. (1980) An outbreak of rotavirus infection among adults in a cardiology ward. J. Infect. 2, 33–37.
Lambert, M., Patton, T., Chudzio, T., Machin, J., and Sankar-Mistry, P. (1991) An outbreak of rotaviral gastroenteritis in a nursing home for senior citizens. Can. J. Public Health 82, 351–353.
Foster, S. O., Palmer, E. L., Gary, G. W. Jr., et al. (1980) Gastroenteritis due to rotavirus in an isolated Pacific island group: an epidemic of 3,439 cases. J. Infect. Dis. 141, 32–39.
Steffen, R., Collard, F., Tornieporth, N., et al. (1999) Epidemiology, etiology, and impact of traveler’s diarrhoea in Jamaica. JAMA 281, 811–817.
Centers for Disease Control and Prevention. (2000) Foodborne outbreak of group A rotavirus gastroenteritis among college students—District of Columbia, March-April 2000. MMWR 49, 1131–1133.
Japan Ministry of Health and Welfare, National Institute of Infectious Diseases. (2000) An outbreak of group A rotavirus infection among adults from eating meals prepared at a restaurant, April 2000—Shimane. Inf. Agents Surveil. Rep. 21, 145.
Hernandez, F., Monge, R., Jimenez, C., and Taylor, L. (1997) Rotavirus and hepatitis A virus in market lettuce (Latuca sativa) in Costa Rica. Int. J. Food Microbiol. 37, 221–223.
Sair, A. I., D’Souza, D. H., and Jaykus, L.-A. (2002) Human enteric viruses as causes of foodborne disease. Comp. Rev. Food Sci. Food Safety 1, 73–89.
D’Souza, D. H., Jean, J., and Jaykus, L.-A. (2004) Methods for detection of viral and parasitic protozoan pathogens in foods, in Handbook of Food Technology and Food Engineering (Hui, Y. H., ed.). Marcel Dekker, New York.
Jean, J., Blais, B., Darveau, A., and Fliss, I. (2001) Detection of hepatitis A virus by the nucleic acid sequences-based amplification technique and comparison with reverse transcription-PCR. Appl. Environ. Microbiol. 67, 5593–5600.
Jean, J., Blais, B., Darveau, A., and Fliss, I. (2002a) Rapid detection of human rotavirus using colorimetric nucleic acid sequence-based amplification (NASBA)-enzyme-linked immunosorbent assay in sewage treatment effluent. FEMS Microbiol. Lett. 210, 143–147.
Jean, J., Blais, B., Darveau, A. and Fliss, I. (2002b) Simultaneous detection and identification of hepatitis A virus and rotavirus by multiplex nucleic acid sequence-based amplification (NASBA) and microtiter plate hybridization system. J. Virol. Methods 105, 123–132.
Jean, J., D’Souza, D. H., and Jaykus, L.-A. (2004) Multiplex nucleic acid sequence-based amplification for the simultaneous detection of enteric viruses in model ready-to-eat foods. Appl. Environ. Microbiol. 70, 6603–6610.
Tai, J. H., Ewert, M. S., Belliot, G., Glass, R. I., and Monroe, S. S. (2003) Development of a rapid method using nucleic acid sequence-based amplification for the detection of astrovirus. J. Virol. Methods 110, 119–127.
Heim, A. and Schumann, J. (2002) Development and evaluation of a nucleic acid sequence based amplification (NASBA) protocol for the detection of enterovirus RNA in cerebrospinal fluid samples. J. Virol. Methods 103, 101–107.
Greene, S. R., Moe, C. L., Jaykus, L. A., Cronin, M., Grosso, L., and Aarle, P. (2003) Evaluation of the NucliSens Basic Kit assay for detection of Norwalk virus RNA in stool specimens. J. Virol. Methods 108, 123–131.
Compton, J. (1991) Nucleic acid sequence-based amplification. Nature 350, 91–92.
Lunel, F., Cresta, P., Viour, D., et al. (1999) Comparative evaluation of hepatitis C virus RNA quantitation by branched DNA, NASBA, and monitor assays. Hepatology 29, 528–535.
Min, J. and Baeumner,A. J. (2002) Highly sensitive and specific detection of viable Escherichia coli in drinking water. Anal. Biochem. 303, 186–193.
Cook, N., Ellison, J., Kurdziel, A. S., Simpkins, S., and Hays, J. P. (2002) A NASBA-based method to detect Salmonella enterica serotype Enteritidis strain PT4 in liquid whole egg. J. Food Prot. 65, 1177–1178.
Uyttendaele, M., Schukkink R., van Gemen, B., and Debevere, J. (1995a) Detection of Campylobacter jejuni added to foods by using a combined selective enrichment and nucleic acid sequence-based amplification (NASBA). Appl. Environ. Microbiol. 61, 1341–1347.
Uyttendaele, M., Schukkink, R., van Gemen, B., and Debevere, J., (1995b) Development of NASBA®, a nucleic acid amplification system, for identification of Listeria monocytogenes and comparison to ELISA and a modified FDA method. Int. J. Food Microbiol. 27, 77–89.
Mbithi, J. N., Springthorpe, V. S., and Sattar, S. A. (1991) Effect of relative humidity and air temperature on survival of hepatitis A virus on environmental surfaces. Appl. Environ. Microbiol. 57, 1394–1399.
Mbithi, J. N., Springthorpe, V. S., Boulet, J. R., and Sattar, S. A. (1992) Survival of hepatitis A virus on human hands and its transfer on contact with animate and inanimate surfaces. J. Clin. Microbiol. 30, 757–763.
Sattar, S. A., Jacobsen H., Rahman, H., Cusack, T. M., and Rubino, J. R. (1994) Interruption of rotavirus spread through chemical disinfection. Infect. Control Hosp. Epidemiol. 15, 751–756.
Sattar, S. A., Springthorpe, V. S., Karim, Y., and Loro, P. (1989) Chemical disinfection of non-porous inanimate surfaces experimentally contaminated with four human pathogenic viruses. Epidemiol. Inf. 102, 493–505.
Reed, L. J. and Muench, H. A. (1938) A simple method of estimating fifty percent endpoints. Am. J. Hygiene 27, 493–497.
Blais, B. W., Turner, G., Sooknanan, R., and Malek, L. T. (1997) A nucleic acid sequence-based amplification system for detection of Listeria monocytogenes hlyA sequences. Appl. Environ. Microbiol. 63, 310–313.
Maniatis, T., Fritsch, E. F., and Sambrook, J. (1982) Molecular Cloning, A Laboratory Manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
Sooknanan, R., van Gemen, B., and Malek, L. T. (1995) Nucleic acid sequence-based amplification, in Molecular Methods for Virus Detection. (Wiedbrauk, D. L., Farkas, D. H., eds.) Academic Press, San Diego, CA.
Bouchriti, N. and Goyal, S. M. (1993) Methods for the concentration and detection of human enteric viruses in shellfish: a review. New Microbiol. 16, 105–114.
Richards, G. P. (1999) Limitations of molecular biological techniques for assessing the virological safety of foods. J. Food Prot. 62, 691–697.
Kievits, T., van Gemen, B., van Strijp, D., et al. (1991) NASBA™ isothermal enzymatic in vitro nucleic acid amplification optimized for the diagnosis of HIV-1 infection. J. Virol. Methods 35, 273–286.
Acknowledgments
The authors wish to thank Dr. Stephen Davids for revision of the manuscript. Work described in this chapter was supported by the Conseil des recherches en Pêche et en agroalimentaire du Québec (CORPAQ).
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2006 Humana Press Inc.
About this protocol
Cite this protocol
Jean, J., Fliss, I. (2006). Detection of Hepatitis A Virus and Rotavirus Using Nucleic Acid Sequence-Based Amplification. In: Adley, C.C. (eds) Food-Borne Pathogens. Methods in Biotechnology™, vol 21. Humana Press. https://doi.org/10.1385/1-59259-990-7:171
Download citation
DOI: https://doi.org/10.1385/1-59259-990-7:171
Publisher Name: Humana Press
Print ISBN: 978-1-58829-465-4
Online ISBN: 978-1-59259-990-5
eBook Packages: Springer Protocols