Abstract
With the whole genome sequence and thousands of defined polymorphisms between ecotypes available, it has become much easier to clone a gene by position (map-based cloning) in Arabidopsis. Recent development of DNA-isolation methods in plants also dramatically facilitated large-scale processing of DNA samples. Here, we describe detailed protocols for each step on general scheme of map-based cloning, from mutagenesis to genetic analysis, from rough mapping to fine mapping, and at the end to cloning the gene. Not only can these methods be used to isolate genes that are involved in plant innate immunity, they can also be adapted for any forward genetics projects in Arabidopsis.
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References
Arabidopsis Genome Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. (2000) Nature 408, 796–815.
Jander, G., Norris, S. R., Rounsley, S. D., Bush, D. F., Levin, I. M., and Last, R. L. (2002) Arabidopsis map-based cloning in the post-genome era. Plant Physiol. 129, 440–450.
Koornneef, M., Dellaert, L. W., and van der Veen, J. H. (1982) EMS-and radiation-induced mutation frequencies at individual loci in Arabidopsis thaliana (L.) Heynh. Mutat. Res. 93, 109–123.
Zhang, Y., Goritschnig, S., Dong, X., and Li, X. (2003) A gain-of-function mutation in a plant disease resistance gene leads to constitutive activation of downstream signal transduction pathways in suppressor of npr1-1, constitutive 1. Plant Cell 15, 2636–2646.
Zhang, Y. and Li, X. (2005) A putative nucleoporin 96 Is required for both basal defense and constitutive resistance responses mediated by suppressor of npr1-1,constitutive 1. Plant Cell 17, 1306–1316.
Lin, J. J., Fleming, R., Kuo, J., Matthews, B. F., and Saunders, J. A. (2000) Detection of plant genes using a rapid, nonorganic DNA purification method. Biotechniques 28, 346–350.
Clough, S. J. and Bent, A. F. (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735–743.
Alonso, J. M., Stepanova, A. N., Leisse, T. J., Kim, C. J., Chen, H., Shinn, P., et al. (2003) Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301, 653–657.
Sessions, A., Burke, E., Presting, G., et al. (2002) A high-throughput Arabidopsis reverse genetics system. Plant Cell 14, 2985–2994.
Acknowledgements
The authors thank Yu Ti Cheng for help with Table 1 , and Sandra Goritschnig and Kristoffer Palma for careful reading of the chapter.
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Zhang, Y., Glazebrook, J., Li, X. (2007). Identification of Components in Disease-Resistance Signaling in Arabidopsis by Map-Based Cloning. In: Ronald, P.C. (eds) Plant-Pathogen Interactions. Methods in Molecular Biology, vol 354. Humana Press. https://doi.org/10.1385/1-59259-966-4:69
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DOI: https://doi.org/10.1385/1-59259-966-4:69
Publisher Name: Humana Press
Print ISBN: 978-1-58829-448-7
Online ISBN: 978-1-59259-966-0
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