Abstract
The study of biological processes relies increasingly on methods for probing structure and function of biochemical machinery (proteins, nucleic acids, and so on) with submolecular resolution. Atomic force microscopy (AFM) has recently emerged as a promising approach for imaging biological structures with resolution approaching the nanometer scale. Two important limitations of AFM in biological imaging are (1) resolution is constrained by probe tip dimensions, and (2) typical probe tips lack chemical specificity to differentiate between functional groups in biological structures. Single-walled carbon nanotubes (SWNTs) offer an intriguing possibility for providing both high resolution and chemical selectivity in AFM imaging, thus overcoming the enumerated limitations. Procedures for generating SWNT tips for AFM will be described. Carboxylic acid functional groups at the SWNT ends can be functionalized using covalent coupling chemistry to attach biological moieties via primary amine groups. Herein, the focus will be on describing methods for attaching biotin to SWNT tips and probing streptavidin on surfaces; importantly, this same coupling chemistry can also be applied to other biomolecules possessing primary amine groups. Underivatized SWNT tips can also provide high-resolution AFM images of DNA. Biofunctionalization of SWNT AFM tips offers great potential to enable high-resolution, chemically selective imaging of biological structures.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Glusker, J. P. (1994) X-ray crystallography of proteins. Meth. Biochem. Anal. 37, 1–72.
Harris, K. D. M., Tremayne, M., and Kariuki, B. M. (2001) Contemporary advances in the use of powder x-ray diffraction for structure determination. Angew. Chem. Int. Ed. 40, 1626–1651.
Wagner, G., Hyberts, S. G., and Havel, T. F. (1992) NMR structure determination in solution: a critique and comparison with x-ray crystallography. Annu. Rev. Biophys. Biomol. Struct. 21, 167–198.
Staunton, D., Owen, J., and Campbell, I. D. (2003) NMR and structural genomics. Acc. Chem. Res. 36, 207–214.
Binnig, G., Quate, C. F., and Gerber, C. (1986) Atomic force microscope. Phys. Rev. Lett. 56, 930–933.
Yazdani, A. and Lieber, C. M. (1999) Up close and personal to atoms. Nature 401, 227–230.
Hansma, H. G. and Pietrasanta, L. (1998) Atomic force microscopy and other scanning probe microscopies. Curr. Opin. Chem. Biol. 2, 579–584.
Czajkowsky, D. M., Iwamoto, H., and Shao, Z. F. (2000) Atomic force microscopy in structural biology: from the subcellular to the submolecular. J. Electron Microsc. 49, 395–406.
Bustamante, C., Rivetti, C., and Keller, D. J. (1997) Scanning force microscopy under aqueous solutions. Curr. Opin. Struct. Biol. 7, 709–716.
Dai, H., Hafner, J. H., Rinzler, A. G., Colbert, D. T., and Smalley, R. E. (1996) Nanotubes as nanoprobes in scanning probe microscopy. Nature 384, 147–150.
Wong, S. S., Harper, J. D., Lansbury, P. T., Jr., and Lieber, C. M. (1998) Carbon nanotube tips: high resolution probes for imaging biological systems. J. Am. Chem. Soc. 120, 603–604.
Wong, S. S., Joselevich, E., Woolley, A. T., Cheung, C. L., and Lieber, C. M. (1998) Covalently functionalized nanotubes as nanometre-sized probes in chemistry and biology. Nature 394, 52–55.
Sun, L. F., Xie, S. S., Liu, W., Zhou, W. Y., Liu, Z. Q., Tang, D. S., et al. (2000) Creating the narrowest carbon nanotubes. Nature 403, 384.
Wong, S. S., Woolley, A. T., Odom, T. W., Huang, J.-L., Kim, P., Vezenov, D. V., et al. (1998) Single-walled carbon nanotube probes for high-resolution nanostructure imaging. Appl. Phys. Lett. 73, 3465–3467.
Woolley, A. T., Guillemette, C., Cheung, C. L., Housman, D. E., and Lieber, C. M. (2000) Direct haplotyping of kilobase-size DNA using carbon nanotube probes. Nat. Biotechnol. 18, 760–763.
Cheung, C. L., Hafner, J. H., and Lieber, C. M. (2000) Carbon nanotube atomic force microscopy tips: direct growth by chemical vapor deposition and application to high resolution imaging. Proc. Natl. Acad. Sci. USA 97, 3809–3813.
Wong, S. S., Woolley, A. T., Joselevich, E., Cheung, C. L., and Lieber, C. M. (1998) Covalently-functionalized single-walled carbon nanotube probe tips for chemical force microscopy. J. Am. Chem. Soc. 120, 8557–8558.
Wong, S. S., Woolley, A. T., Joselevich, E., and Lieber, C. M. (1999) Functionalization of carbon nanotube AFM probes using tip-activated gases. Chem. Phys. Lett. 306, 219–225.
Woolley, A. T., Cheung, C. L., Hafner, J. H., and Lieber, C. M. (2000) Structural biology with carbon nanotube AFM probes. Chem. Biol. 7, R193–R204.
Hafner, J. H., Cheung, C. L., Woolley, A. T., and Lieber, C. M. (2001) Structural and functional imaging with carbon nanotube AFM probes. Prog. Biophys. Mol. Biol. 77, 73–110.
Florin, E.-L., Moy, V. T., and Gaub, H. E. (1994) Adhesion forces between individual ligand-receptor pairs. Science 264, 415–417.
Woolley, A. T. and Kelly, R. T. (2001) Deposition and characterization of extended single-stranded DNA molecules on surfaces. Nano Lett. 1, 345–348.
Hughes, S. D. and Woolley, A. T. (2003) Detailed characterization of conditions for alignment of single-stranded and double-stranded DNA fragments on surfaces. Biomed. Microdevices 5, 69–74.
Thess, A., Lee, R., Nikolaev, P., Dai, H., Petit, P., Robert, J., et al. (1996) Crystalline ropes of metallic carbon nanotubes. Science 273, 483–487.
A website listing a number of commercial SWNT suppliers is the following Website: http://www.pa.msu.edu/cmp/csc/NTSite/nanotube-sources-com.html.
Hafner, J. H., Cheung, C. L., and Lieber, C. M. (1999) Growth of nanotubes for probe microscopy tips. Nature 398, 761–762.
Hafner, J. H., Cheung, C. L., and Lieber, C. M. (1999) Direct growth of single-walled carbon nanotube scanning probe microscopy tips. J. Am. Chem. Soc. 121, 9750–9751.
Hafner, J. H., Cheung, C. L., Oosterkamp, T. H., and Lieber, C. M. (2001) High-yield assembly of individual single-walled carbon nanotube tips for scanning probe microscopies. J. Phys. Chem. B 105, 743–746.
Ekvall, I., Wahlström, E., Claesson, D., Olin, H., and Olsson, E. (1999) Preparation and characterization of electrochemically etched W tips for STM. Meas. Sci. Technol. 10, 11–18.
Bain, C. D., Troughton, E. B., Tao, Y.-T., Evall, J., Whitesides, G. M., and Nuzzo, R. G. (1989) Formation of monolayer films by the spontaneous assembly of organic thiols from solution onto gold. J. Am. Chem. Soc. 111, 321–335.
Sagiv, J. (1980) Organized monolayers by adsorption. I. Formation and structure of oleophobic mixed monolayers on solid surfaces. J. Am. Chem. Soc. 102, 92–98.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2004 Humana Press Inc.
About this protocol
Cite this protocol
Woolley, A.T. (2004). Biofunctionalization of Carbon Nanotubes for Atomic Force Microscopy Imaging. In: Niemeyer, C.M. (eds) Bioconjugation Protocols. Methods in Molecular Biology™, vol 283. Humana Press, Totowa, NJ. https://doi.org/10.1385/1-59259-813-7:305
Download citation
DOI: https://doi.org/10.1385/1-59259-813-7:305
Publisher Name: Humana Press, Totowa, NJ
Print ISBN: 978-1-58829-098-4
Online ISBN: 978-1-59259-813-7
eBook Packages: Springer Protocols